Prupe.5G130900_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
12644569 .. 12646556
1988 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G130900.1

Sequence Viewer

Length: 1128 bp
ATGGAGGCCCTTAAGATTTCTCAGTGTTTTCTGCTATGGTTTATGTGCTCAACTGTTCTGTTTTTGAATGCCTTGCAGCCCTGTTTTGCTTTCACTTCATTTGTGTTTGGAGATTCTTTGGTTGATGCAGGAAACAATGACTACATTTTCACGCTCTCAAAGGCAGATTCTCCTCCTTATGGCATTGATTTTAAGCCTTCTGGAGGACATCCCACCGGTCGATTCACAAATGGTCGAACCATTTCAGACATTGTAGGTCAAGCTTTTGGAGCCAAGTCATTTCCTCCACCTTATCTAGCACCAAACGCTCAAGCCAACTCAATCCTCGGAGGAATTAATTATGCTTCTGGAGCCTCTGGAATATTAGATGAAACGGGGGTTTTATTTATTGGAAGAGTTCCTCTGCGTGAGCAAGTAAATAATTTTGAGCACAGCAGAAGTTACATGGTGAAAGTAATGGGAGAGAAGAATACAATGGAGTTTCTAAAGAAGGCAATCTTCTCAGTCACTATTGGATCCAATGATTTCCTCAACTATTTCCAACCAACCATACCTGTTTTTGGTAATGGCAAAGTCTCTCCTAACTTGTTCCAAGACTTCATGGTCTCTAACTTGACTATACATCTCAAGAGATTGCACTTGTTGGGAGCTAGAAAGTTCATTGTGGTAGGAGTTGGACCACTAGGATGCATACCCTTTATTCGTGCCATCAAATTATTACCTAGTGGACAGTGCTCTGCTGTGGTGAATGAGTTGATCCAAGGCTACAATACCAAACTGAATGGGGTTTTGGATCAACTAAATCAAGAATTGGGTCCTGAAGCTATCTTTGTTTATGCAAATTCCTTTGATATCTTCATGAAGATTATAGGAAATTATCATCAATATGGATTTGAGGATGCAAATGAGCCATGCTGTGGTGGGTACTTTCCACCATTTATTTGCTTCAAGAGCAGTGGTACAAACAGAAGCACTGCGTTGTGTGCCGATCGGTCGAAGTATGTGTTCTGGGATGCATATCATCCTACAGAAGCTGCAAATATGATCATAGCCAAGGGGTTACTTGACGGGGATGAAAGTGTTAGCTATCCCATTAACATCCGCGAGCTTTACAAATATAACTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

376

Amino Acids

41.32

Weight (kDa)

6.59

Isoelectric Point (pI)

25.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015993)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41890
fragaria_vesca FvH4_5g10830
malus_domestica MD06G1120400.v1.1
prunus_persica Prupe.5G130900_v2.0.a1
pyrus_communis pycom06g11170
rosa_chinensis RchiOBHm_Chr7g0187331
rosa_laevigata RLG00000004794
rosa_multiflora Rmu_sc0001758.1_g000012
rosa_roxburghii Rroxscaffold_3G00267600
rosa_rugosa Rorug06G0480600.1
rosa_samantha Rh7AG085100 Rh7BG077500 Rh7CG086100 Rh7DG087200
rosa_wichuraiana Rw7G007480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 917
AccII CGCG 1 cut(s) 1104
AciI CCGC 1 cut(s) 1102
AclWI GGATC 4 cut(s) 510, 523, 751, 801
AcsI RAATTY 1 cut(s) 841
AcuI CTGAAG 1 cut(s) 840
AfaI GTAC 2 cut(s) 926, 961
AfiI CCNNNNNNNGG 4 cut(s) 179, 203, 560, 917
AflII CTTAAG 1 cut(s) 11
AgeI ACCGGT 1 cut(s) 215
AgsI TTSAA 2 cut(s) 67, 949
AjuI GAANNNNNNNTTGG 2 cut(s) 773, 805
AluBI AGCT 6 cut(s) 263, 650, 824, 1034, 1086, 1108
AluI AGCT 6 cut(s) 263, 650, 824, 1034, 1086, 1108
Alw21I GWGCWC 3 cut(s) 50, 432, 737
Alw26I GTCTC 2 cut(s) 580, 610
AlwI GGATC 4 cut(s) 510, 523, 751, 801
AlwNI CAGNNNCTG 1 cut(s) 1034
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 76, 1034
ApoI RAATTY 1 cut(s) 841
AseI ATTAAT 1 cut(s) 336
AsiGI ACCGGT 1 cut(s) 215
Asp700I GAANNNNTTC 1 cut(s) 241
AspS9I GGNCC 3 cut(s) 7, 677, 815
AsuHPI GGTGA 2 cut(s) 460, 757
AvaII GGWCC 2 cut(s) 677, 815
BamHI GGATCC 1 cut(s) 515
Bbv12I GWGCWC 3 cut(s) 50, 432, 737
BbvI GCAGC 2 cut(s) 88, 1021
BccI CCATC 1 cut(s) 716
BclI TGATCA 1 cut(s) 1044
BcoDI GTCTC 2 cut(s) 580, 610
BfaI CTAG 5 cut(s) 296, 651, 683, 723, 1126
BfmI CTRYAG 1 cut(s) 1026
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 2 cut(s) 77, 1035
BlsI GCNGC 2 cut(s) 78, 1036
Bme18I GGWCC 2 cut(s) 677, 815
BmgT120I GGNCC 3 cut(s) 7, 677, 815
BmiI GGNNCC 4 cut(s) 271, 352, 517, 816
BmsI GCATC 4 cut(s) 115, 677, 889, 1003
BpmI CTGGAG 2 cut(s) 222, 369
BpuEI CTTGAG 2 cut(s) 294, 611
BsaBI GATNNNNATC 1 cut(s) 1017
BsaI GGTCTC 1 cut(s) 610
BsaJI CCNNGG 3 cut(s) 325, 760, 1053
BsaWI WCCGGW 1 cut(s) 215
Bsc4I CCNNNNNNNGG 4 cut(s) 179, 203, 560, 917
Bse118I RCCGGY 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 1017
BseDI CCNNGG 3 cut(s) 325, 760, 1053
BseGI GGATG 7 cut(s) 208, 692, 904, 1018, 1021, 1078, 1098
BseJI GATNNNNATC 1 cut(s) 1017
BseLI CCNNNNNNNGG 4 cut(s) 179, 203, 560, 917
BseMII CTCAG 2 cut(s) 35, 516
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 88, 1021
Bsh1236I CGCG 1 cut(s) 1104
Bsh1285I CGRYCG 3 cut(s) 220, 991, 995
BshFI GGCC 1 cut(s) 8
BshTI ACCGGT 1 cut(s) 215
BsiEI CGRYCG 3 cut(s) 220, 991, 995
BsiHKAI GWGCWC 3 cut(s) 50, 432, 737
BsiSI CCGG 1 cut(s) 216
BslI CCNNNNNNNGG 4 cut(s) 179, 203, 560, 917
BsmAI GTCTC 2 cut(s) 580, 610
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 610
Bsp1286I GDGCHC 3 cut(s) 50, 432, 737
Bsp143I GATC 5 cut(s) 515, 756, 793, 988, 1044
BspACI CCGC 1 cut(s) 1102
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 34, 515
BspFNI CGCG 1 cut(s) 1104
BspHI TCATGA 1 cut(s) 858
BspLI GGNNCC 4 cut(s) 271, 352, 517, 816
BspPI GGATC 4 cut(s) 510, 523, 751, 801
BspTI CTTAAG 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 610
BsrFI RCCGGY 1 cut(s) 215
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 3 cut(s) 325, 760, 1053
BssMI GATC 5 cut(s) 515, 756, 793, 988, 1044
BssT1I CCWWGG 2 cut(s) 760, 1053
Bst4CI ACNGT 2 cut(s) 55, 732
Bst6I CTCTTC 1 cut(s) 388
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 1106
BstDEI CTNAG 2 cut(s) 21, 502
BstENI CCTNNNNNAGG 1 cut(s) 201
BstF5I GGATG 7 cut(s) 208, 692, 904, 1018, 1021, 1078, 1098
BstFNI CGCG 1 cut(s) 1104
BstKTI GATC 5 cut(s) 518, 759, 796, 991, 1047
BstMAI GTCTC 2 cut(s) 580, 610
BstMBI GATC 5 cut(s) 515, 756, 793, 988, 1044
BstMCI CGRYCG 3 cut(s) 220, 991, 995
BstMWI GCNNNNNNNGC 5 cut(s) 269, 305, 350, 951, 983
BstSFI CTRYAG 1 cut(s) 1026
BstUI CGCG 1 cut(s) 1104
BstV1I GCAGC 2 cut(s) 88, 1021
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 7 cut(s) 208, 692, 904, 1018, 1021, 1078, 1098
BtsI GCAGTG 2 cut(s) 961, 972
BtsIMutI CAGTG 4 cut(s) 29, 737, 961, 972
Cac8I GCNNGC 1 cut(s) 1106
CaiI CAGNNNCTG 1 cut(s) 1034
CciI TCATGA 1 cut(s) 858
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 3 cut(s) 7, 677, 815
Csp6I GTAC 2 cut(s) 925, 960
CspAI ACCGGT 1 cut(s) 215
CspCI CAANNNNNGTGG 2 cut(s) 937, 972
CviAII CATG 4 cut(s) 445, 601, 859, 912
CviQI GTAC 2 cut(s) 925, 960
DdeI CTNAG 2 cut(s) 21, 502
DpnI GATC 5 cut(s) 517, 758, 795, 990, 1046
DpnII GATC 5 cut(s) 515, 756, 793, 988, 1044
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
Eam1104I CTCTTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 388
Eco130I CCWWGG 2 cut(s) 760, 1053
Eco31I GGTCTC 1 cut(s) 610
Eco32I GATATC 1 cut(s) 853
Eco47I GGWCC 2 cut(s) 677, 815
Eco57I CTGAAG 1 cut(s) 840
EcoNI CCTNNNNNAGG 1 cut(s) 201
EcoO109I RGGNCCY 2 cut(s) 7, 815
EcoRV GATATC 1 cut(s) 853
EcoT14I CCWWGG 2 cut(s) 760, 1053
EcoT22I ATGCAT 2 cut(s) 692, 1018
ErhI CCWWGG 2 cut(s) 760, 1053
FaeI CATG 4 cut(s) 448, 604, 862, 915
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FatI CATG 4 cut(s) 444, 600, 858, 911
FbaI TGATCA 1 cut(s) 1044
Fnu4HI GCNGC 2 cut(s) 77, 1035
FokI GGATG 7 cut(s) 195, 699, 911, 1008, 1025, 1085, 1085
Fsp4HI GCNGC 2 cut(s) 77, 1035
FspBI CTAG 5 cut(s) 296, 651, 683, 723, 1126
GluI GCNGC 2 cut(s) 77, 1035
GsuI CTGGAG 2 cut(s) 222, 369
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 216
Hin1II CATG 4 cut(s) 448, 604, 862, 915
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 3 cut(s) 113, 167, 222
HpaII CCGG 1 cut(s) 216
HphI GGTGA 2 cut(s) 460, 757
Hpy166II GTNNAC 1 cut(s) 728
Hpy188I TCNGA 2 cut(s) 247, 329
Hpy188III TCNNGA 8 cut(s) 201, 348, 357, 628, 806, 818, 859, 949
Hpy8I GTNNAC 1 cut(s) 728
HpyAV CCTTC 2 cut(s) 207, 484
HpyCH4III ACNGT 2 cut(s) 55, 732
HpyCH4V TGCA 8 cut(s) 76, 128, 637, 690, 839, 902, 1016, 1037
HpyF10VI GCNNNNNNNGC 5 cut(s) 269, 305, 350, 951, 983
HpyF3I CTNAG 2 cut(s) 21, 502
Hsp92II CATG 4 cut(s) 448, 604, 862, 915
Ksp22I TGATCA 1 cut(s) 1044
Kzo9I GATC 5 cut(s) 515, 756, 793, 988, 1044
LmnI GCTCC 3 cut(s) 269, 350, 647
LpnPI CCDG 9 cut(s) 94, 114, 186, 229, 333, 342, 567, 831, 994
Lsp1109I GCAGC 2 cut(s) 88, 1021
LweI GCATC 4 cut(s) 115, 677, 889, 1003
MaeI CTAG 5 cut(s) 296, 651, 683, 723, 1126
MaeIII GTNAC 3 cut(s) 440, 505, 1059
MalI GATC 5 cut(s) 517, 758, 795, 990, 1046
MboI GATC 5 cut(s) 515, 756, 793, 988, 1044
MboII GAAGA 5 cut(s) 405, 478, 490, 847, 874
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 3 cut(s) 50, 432, 737
MluCI AATT 7 cut(s) 333, 337, 421, 713, 809, 841, 874
MmeI TCCRAC 2 cut(s) 565, 655
MnlI CCTC 9 cut(s) 183, 197, 294, 323, 335, 364, 411, 539, 889
Mph1103I ATGCAT 2 cut(s) 692, 1018
MroXI GAANNNNTTC 1 cut(s) 241
MseI TTAA 4 cut(s) 12, 192, 336, 1095
MslI CAYNNNNRTG 2 cut(s) 685, 885
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 1 cut(s) 216
Mva1269I GAATGC 1 cut(s) 73
MvnI CGCG 1 cut(s) 1104
MwoI GCNNNNNNNGC 5 cut(s) 269, 305, 350, 951, 983
NdeII GATC 5 cut(s) 515, 756, 793, 988, 1044
NlaIII CATG 4 cut(s) 448, 604, 862, 915
NlaIV GGNNCC 4 cut(s) 271, 352, 517, 816
NmuCI GTSAC 1 cut(s) 505
NsiI ATGCAT 2 cut(s) 692, 1018
PagI TCATGA 1 cut(s) 858
PctI GAATGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 241
PfeI GAWTC 3 cut(s) 113, 167, 222
PflMI CCANNNNNTGG 1 cut(s) 917
PinAI ACCGGT 1 cut(s) 215
PkrI GCNGC 2 cut(s) 78, 1036
Ple19I CGATCG 1 cut(s) 991
PpuMI RGGWCCY 1 cut(s) 815
PshBI ATTAAT 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 815
PspN4I GGNNCC 4 cut(s) 271, 352, 517, 816
PspPI GGNCC 3 cut(s) 7, 677, 815
PspPPI RGGWCCY 1 cut(s) 815
PstNI CAGNNNCTG 1 cut(s) 1034
PsuI RGATCY 1 cut(s) 515
PvuI CGATCG 1 cut(s) 991
RsaI GTAC 2 cut(s) 926, 961
RsaNI GTAC 2 cut(s) 925, 960
RseI CAYNNNNRTG 2 cut(s) 685, 885
SaqAI TTAA 4 cut(s) 12, 192, 336, 1095
SatI GCNGC 2 cut(s) 77, 1035
Sau3AI GATC 5 cut(s) 515, 756, 793, 988, 1044
Sau96I GGNCC 3 cut(s) 7, 677, 815
SduI GDGCHC 3 cut(s) 50, 432, 737
SfaNI GCATC 4 cut(s) 115, 677, 889, 1003
SfcI CTRYAG 1 cut(s) 1026
SinI GGWCC 2 cut(s) 677, 815
SmiMI CAYNNNNRTG 2 cut(s) 685, 885
SmlI CTYRAG 3 cut(s) 11, 309, 626
SmoI CTYRAG 3 cut(s) 11, 309, 626
Sse9I AATT 7 cut(s) 333, 337, 421, 713, 809, 841, 874
SsiI CCGC 1 cut(s) 1102
SspI AATATT 1 cut(s) 363
SspMI CTAG 5 cut(s) 296, 651, 683, 723, 1126
StyI CCWWGG 2 cut(s) 760, 1053
TaaI ACNGT 2 cut(s) 55, 732
TaqI TCGA 3 cut(s) 220, 235, 995
TaqII GACCGA 1 cut(s) 981
TasI AATT 7 cut(s) 333, 337, 421, 713, 809, 841, 874
TfiI GAWTC 3 cut(s) 113, 167, 222
Tru1I TTAA 4 cut(s) 12, 192, 336, 1095
Tru9I TTAA 4 cut(s) 12, 192, 336, 1095
TscAI CASTG 4 cut(s) 29, 737, 961, 979
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 2 cut(s) 76, 1034
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 7 cut(s) 87, 384, 589, 649, 847, 875, 1089
TspRI CASTG 4 cut(s) 29, 737, 961, 979
Van91I CCANNNNNTGG 1 cut(s) 917
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 2 cut(s) 677, 815
VspI ATTAAT 1 cut(s) 336
XagI CCTNNNNNAGG 1 cut(s) 201
XapI RAATTY 1 cut(s) 841
XmnI GAANNNNTTC 1 cut(s) 241
XspI CTAG 5 cut(s) 296, 651, 683, 723, 1126
Zsp2I ATGCAT 2 cut(s) 692, 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.