AT5G42110

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
16831696 .. 16832357
662 bp
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UTR
Exon/CDS
Intron
AT5G42110.1

Sequence Viewer

Length: 189 bp
ATGAAGGTTTCAAGCGGTGTGGTCGCTTCTGTCATTGCCGTCTCCACCGCTGCTCTCTCTTCTTCCTCCATTCTTCCTCCAGTCTCCCCAAAGGTTTGGGAATCGAGGAAAACGAATGGGTCGGACAATTTCGAGCCGAGGTTTGATGGGTTAAGGTTCATAGAGACGCTGGTCACAGCACACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.63

Weight (kDa)

9.69

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016554)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 15, 48
AgsI TTSAA 1 cut(s) 12
Alw26I GTCTC 3 cut(s) 46, 88, 158
ApeKI GCWGC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 23
BcoDI GTCTC 3 cut(s) 46, 88, 158
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BoxI GACNNNNGTC 1 cut(s) 170
BpmI CTGGAG 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 37
BsmAI GTCTC 3 cut(s) 46, 88, 158
BsmBI CGTCTC 2 cut(s) 46, 158
BspACI CCGC 2 cut(s) 15, 48
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 64
BstMAI GTCTC 3 cut(s) 46, 88, 158
BstPAI GACNNNNGTC 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 37
BstXI CCANNNNNNTGG 1 cut(s) 96
CseI GACGC 1 cut(s) 175
CspCI CAANNNNNGTGG 1 cut(s) 35
CviJI RGCY 1 cut(s) 136
CviKI_1 RGCY 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Esp3I CGTCTC 2 cut(s) 46, 158
FaiI YATR 1 cut(s) 161
Fnu4HI GCNGC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 63
HgaI GACGC 1 cut(s) 175
HinfI GANTC 1 cut(s) 101
Hpy188I TCNGA 1 cut(s) 124
LpnPI CCDG 2 cut(s) 93, 155
Lsp1109I GCAGC 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 172
MboII GAAGA 3 cut(s) 51, 54, 65
MluCI AATT 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 4 cut(s) 76, 87, 99, 132
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 184
MspA1I CMGCKG 1 cut(s) 50
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 52
PshAI GACNNNNGTC 1 cut(s) 170
RseI CAYNNNNRTG 1 cut(s) 184
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 1 cut(s) 51
SetI ASST 4 cut(s) 9, 96, 143, 158
SgeI CNNG 6 cut(s) 24, 92, 117, 145, 150, 182
SmiMI CAYNNNNRTG 1 cut(s) 184
Sse9I AATT 1 cut(s) 127
SsiI CCGC 2 cut(s) 15, 48
TaqI TCGA 2 cut(s) 104, 132
TasI AATT 1 cut(s) 127
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 17, 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.