RchiOBHm_Chr7g0187581

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
7363568 .. 7364761
1194 bp
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UTR
Exon/CDS
Intron
PRQ16745

Sequence Viewer

Length: 216 bp
ATGAAGGCTTCCGGTACTCTCGTCGCCTCCATGGTCGCCGCCTCCACCATGGCTCTGACCTCCTCCTCCTCCTCCTCCTCCTCTCCCTCCGCCGCGCCGGGGCTTGCCTCTGCGAAGGGCGGGCGCAATTCGCATACGGCGTCGGATAAGGAGAAGTTCGAGCCGAGATTCGACGGGTTGAGGTTCATTGAGACGTTGGTCACGGCGCACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.24

Weight (kDa)

9.98

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016554)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 95
AciI CCGC 4 cut(s) 39, 90, 93, 120
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 185
AspLEI GCGC 3 cut(s) 97, 126, 208
AsuC2I CCSGG 1 cut(s) 99
BaeI ACNNNNGTAYC 1 cut(s) 39
BceAI ACGGC 1 cut(s) 153
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 185
BisI GCNGC 2 cut(s) 39, 93
BlsI GCNGC 2 cut(s) 40, 94
Bme1390I CCNGG 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 99
BoxI GACNNNNGTC 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 3 cut(s) 30, 48, 98
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 99
BseDI CCNNGG 3 cut(s) 30, 48, 98
BseLI CCNNNNNNNGG 1 cut(s) 99
BseRI GAGGAG 7 cut(s) 52, 55, 58, 61, 64, 67, 70
Bsh1236I CGCG 1 cut(s) 95
BsiSI CCGG 2 cut(s) 12, 98
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 185
BsmBI CGTCTC 1 cut(s) 185
Bsp19I CCATGG 2 cut(s) 30, 48
BspACI CCGC 4 cut(s) 39, 90, 93, 120
BspFNI CGCG 1 cut(s) 95
BssECI CCNNGG 3 cut(s) 30, 48, 98
BssNI GRCGYC 1 cut(s) 140
BssT1I CCWWGG 2 cut(s) 30, 48
BstACI GRCGYC 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 105, 122
BstDSI CCRYGG 2 cut(s) 30, 48
BstFNI CGCG 1 cut(s) 95
BstHHI GCGC 3 cut(s) 97, 126, 208
BstMAI GTCTC 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstPAI GACNNNNGTC 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 97
BstUI CGCG 1 cut(s) 95
BtgI CCRYGG 2 cut(s) 30, 48
Cac8I GCNNGC 2 cut(s) 105, 122
CfoI GCGC 3 cut(s) 97, 126, 208
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 15
CviAII CATG 2 cut(s) 31, 49
CviJI RGCY 4 cut(s) 8, 53, 103, 163
CviKI_1 RGCY 4 cut(s) 8, 53, 103, 163
CviQI GTAC 1 cut(s) 15
EciI GGCGGA 1 cut(s) 79
Eco130I CCWWGG 2 cut(s) 30, 48
EcoT14I CCWWGG 2 cut(s) 30, 48
ErhI CCWWGG 2 cut(s) 30, 48
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 2 cut(s) 34, 52
FaiI YATR 3 cut(s) 32, 50, 135
FatI CATG 2 cut(s) 30, 48
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 2 cut(s) 39, 93
Fsp4HI GCNGC 2 cut(s) 39, 93
GlaI GCGC 3 cut(s) 96, 125, 207
GluI GCNGC 2 cut(s) 39, 93
HapII CCGG 2 cut(s) 12, 98
HgaI GACGC 1 cut(s) 129
HhaI GCGC 3 cut(s) 97, 126, 208
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 2 cut(s) 34, 52
Hin6I GCGC 3 cut(s) 95, 124, 206
HinP1I GCGC 3 cut(s) 95, 124, 206
HinfI GANTC 1 cut(s) 168
HpaII CCGG 2 cut(s) 12, 98
Hpy188I TCNGA 2 cut(s) 57, 145
Hpy99I CGWCG 3 cut(s) 26, 145, 176
HpyAV CCTTC 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpySE526I ACGT 1 cut(s) 194
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 2 cut(s) 34, 52
HspAI GCGC 3 cut(s) 95, 124, 206
LpnPI CCDG 2 cut(s) 25, 111
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 199
MluCI AATT 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 123
MspI CCGG 2 cut(s) 12, 98
MspR9I CCNGG 1 cut(s) 99
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 99
NcoI CCATGG 2 cut(s) 30, 48
NlaIII CATG 2 cut(s) 34, 52
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 2 cut(s) 40, 94
PshAI GACNNNNGTC 1 cut(s) 197
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SatI GCNGC 2 cut(s) 39, 93
ScrFI CCNGG 1 cut(s) 99
SetI ASST 3 cut(s) 62, 185, 197
Sse9I AATT 1 cut(s) 127
SsiI CCGC 4 cut(s) 39, 90, 93, 120
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 2 cut(s) 30, 48
TaiI ACGT 1 cut(s) 197
TaqI TCGA 2 cut(s) 159, 171
TasI AATT 1 cut(s) 127
TauI GCSGC 2 cut(s) 41, 95
TfiI GAWTC 1 cut(s) 168
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 17, 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.