Prupe.5G132900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016554
Physical Location & Seq
Reverse (-)
12752884 .. 12754142
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G132900.2

Sequence Viewer

Length: 207 bp
ATGAAGGCGTCTGGTACACTGGTGGCTTCGGTGGTTGCCGCGTCCACCATGGCTCTTACGACGTCGTCTTCGTCCAACCAGGGGGTTTCTTCTGCGGCGGTGAAGAACGGTGCACAAAACTGTCAAACGGCGTCGGATAAGGAGAAATTCGAGCCGAGATTCGATGGGTTGAGGTTCATTGAGACGTTGGTGACAGCGCATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.06

Weight (kDa)

9.1

Isoelectric Point (pI)

24.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42110
fragaria_vesca FvH4_5g10570 FvH4_5g10570 FvH4_5g10570
malus_domestica MD06G1122200.v1.1 MD14G1138600.v1.1
prunus_persica Prupe.5G132900_v2.0.a1 Prupe.5G132900_v2.0.a1
pyrus_communis pycom14g11390
rosa_chinensis RchiOBHm_Chr7g0187581
rosa_roxburghii Rroxscaffold_3G00267290
rosa_rugosa Rorug06G0482800
rosa_samantha Rh7AG087700 Rh7DG089900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 65
AccII CGCG 1 cut(s) 41
AciI CCGC 3 cut(s) 39, 95, 98
AcsI RAATTY 1 cut(s) 146
AcyI GRCGYC 3 cut(s) 8, 62, 131
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 81
AjnI CCWGG 1 cut(s) 78
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 176
Alw44I GTGCAC 1 cut(s) 111
ApaLI GTGCAC 1 cut(s) 111
ApoI RAATTY 1 cut(s) 146
ArsI GACNNNNNNTTYG 2 cut(s) 52, 84
AspLEI GCGC 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 112, 202
BaeGI GKGCMC 1 cut(s) 115
BaeI ACNNNNGTAYC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 115
BccI CCATC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 176
BisI GCNGC 2 cut(s) 39, 96
BlsI GCNGC 2 cut(s) 40, 97
Bme1390I CCNGG 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 60
BsaHI GRCGYC 3 cut(s) 8, 62, 131
BsaJI CCNNGG 2 cut(s) 48, 79
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 48, 79
BseLI CCNNNNNNNGG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 115
Bsh1236I CGCG 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 176
BsmBI CGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 115
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 3 cut(s) 39, 95, 98
BspFNI CGCG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 48, 79
BssNI GRCGYC 3 cut(s) 8, 62, 131
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 110, 122
BstACI GRCGYC 3 cut(s) 8, 62, 131
BstDSI CCRYGG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 176
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 115
BstUI CGCG 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 60
BtgI CCRYGG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 17
CfoI GCGC 1 cut(s) 199
CseI GACGC 2 cut(s) 30, 120
Csp6I GTAC 1 cut(s) 15
CviAII CATG 1 cut(s) 49
CviJI RGCY 3 cut(s) 26, 53, 154
CviKI_1 RGCY 3 cut(s) 26, 53, 154
CviQI GTAC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 1 cut(s) 52
FaiI YATR 2 cut(s) 50, 201
FatI CATG 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 39, 96
Fsp4HI GCNGC 2 cut(s) 39, 96
GlaI GCGC 1 cut(s) 198
GluI GCNGC 2 cut(s) 39, 96
HgaI GACGC 2 cut(s) 30, 120
HhaI GCGC 1 cut(s) 199
Hin1I GRCGYC 3 cut(s) 8, 62, 131
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 1 cut(s) 159
HphI GGTGA 2 cut(s) 112, 202
Hpy166II GTNNAC 3 cut(s) 17, 45, 113
Hpy188I TCNGA 1 cut(s) 136
Hpy8I GTNNAC 3 cut(s) 17, 45, 113
Hpy99I CGWCG 3 cut(s) 64, 67, 136
HpyCH4III ACNGT 2 cut(s) 110, 122
HpyCH4IV ACGT 2 cut(s) 62, 185
HpyCH4V TGCA 1 cut(s) 113
HpySE526I ACGT 2 cut(s) 62, 185
Hsp92I GRCGYC 3 cut(s) 8, 62, 131
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 1 cut(s) 197
LpnPI CCDG 3 cut(s) 5, 65, 92
MaeII ACGT 2 cut(s) 62, 185
MaeIII GTNAC 1 cut(s) 190
MboII GAAGA 3 cut(s) 60, 81, 115
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 99, 114
MnlI CCTC 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 41
NcoI CCATGG 1 cut(s) 48
NlaIII CATG 1 cut(s) 52
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PfeI GAWTC 1 cut(s) 159
PflFI GACNNNGTC 1 cut(s) 64
PkrI GCNGC 2 cut(s) 40, 97
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PsyI GACNNNGTC 1 cut(s) 64
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SatI GCNGC 2 cut(s) 39, 96
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 115
SetI ASST 3 cut(s) 65, 176, 188
SgeI CNNG 8 cut(s) 24, 32, 52, 61, 91, 92, 163, 168
Sse9I AATT 1 cut(s) 146
SsiI CCGC 3 cut(s) 39, 95, 98
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 110, 122
TaiI ACGT 2 cut(s) 65, 188
TaqI TCGA 2 cut(s) 150, 162
TasI AATT 1 cut(s) 146
TauI GCSGC 2 cut(s) 41, 98
TfiI GAWTC 1 cut(s) 159
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 17, 166
TspRI CASTG 1 cut(s) 24
Tth111I GACNNNGTC 1 cut(s) 64
VneI GTGCAC 1 cut(s) 111
XapI RAATTY 1 cut(s) 146
ZraI GACGTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.