Rroxscaffold_3G00267290

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
60368195 .. 60368907
713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00267290.1

Sequence Viewer

Length: 207 bp
ATGAAGGCTTCCGGTACTCTCGTCGCCTCCATGGTCGCCGCCTCCACCATGGCTCTGACCTCCTCCTCCTCCTCTCCCTCCGCCGCGCCGGGACTTGCCTCTGCGAAGGGCGGGCGCAATTCGCATACGGCGTCGGATAAGGAGAAGTTCGAGCCCAGATTCGACGGGTTGAGGTTCATTGAGACGTTGGTCACAGCGCACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

6.98

Weight (kDa)

9.98

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016554)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 4 cut(s) 39, 81, 84, 111
AcyI GRCGYC 1 cut(s) 131
AfaI GTAC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 176
AspLEI GCGC 3 cut(s) 88, 117, 199
AsuC2I CCSGG 1 cut(s) 90
BaeI ACNNNNGTAYC 1 cut(s) 39
BanII GRGCYC 1 cut(s) 156
BceAI ACGGC 1 cut(s) 144
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 176
BisI GCNGC 2 cut(s) 39, 84
BlsI GCNGC 2 cut(s) 40, 85
Bme1390I CCNGG 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 90
BoxI GACNNNNGTC 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 30, 48
BsaWI WCCGGW 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 30, 48
BseRI GAGGAG 4 cut(s) 52, 55, 58, 61
Bsh1236I CGCG 1 cut(s) 86
BsiSI CCGG 2 cut(s) 12, 89
BslFI GGGAC 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 176
BsmBI CGTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 156
Bsp19I CCATGG 2 cut(s) 30, 48
BspACI CCGC 4 cut(s) 39, 81, 84, 111
BspFNI CGCG 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 30, 48
BssNI GRCGYC 1 cut(s) 131
BssT1I CCWWGG 2 cut(s) 30, 48
BstACI GRCGYC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 113
BstDSI CCRYGG 2 cut(s) 30, 48
BstFNI CGCG 1 cut(s) 86
BstHHI GCGC 3 cut(s) 88, 117, 199
BstMAI GTCTC 1 cut(s) 176
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstPAI GACNNNNGTC 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 88
BstUI CGCG 1 cut(s) 86
BtgI CCRYGG 2 cut(s) 30, 48
Cac8I GCNNGC 1 cut(s) 113
CfoI GCGC 3 cut(s) 88, 117, 199
CseI GACGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 15
CviAII CATG 2 cut(s) 31, 49
CviJI RGCY 3 cut(s) 8, 53, 154
CviKI_1 RGCY 3 cut(s) 8, 53, 154
CviQI GTAC 1 cut(s) 15
EciI GGCGGA 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 30, 48
Eco24I GRGCYC 1 cut(s) 156
EcoT14I CCWWGG 2 cut(s) 30, 48
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 2 cut(s) 30, 48
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 2 cut(s) 34, 52
FaiI YATR 3 cut(s) 32, 50, 126
FaqI GGGAC 1 cut(s) 105
FatI CATG 2 cut(s) 30, 48
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 2 cut(s) 39, 84
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 39, 84
GlaI GCGC 3 cut(s) 87, 116, 198
GluI GCNGC 2 cut(s) 39, 84
HapII CCGG 2 cut(s) 12, 89
HgaI GACGC 1 cut(s) 120
HhaI GCGC 3 cut(s) 88, 117, 199
Hin1I GRCGYC 1 cut(s) 131
Hin1II CATG 2 cut(s) 34, 52
Hin6I GCGC 3 cut(s) 86, 115, 197
HinP1I GCGC 3 cut(s) 86, 115, 197
HinfI GANTC 1 cut(s) 159
HpaII CCGG 2 cut(s) 12, 89
Hpy188I TCNGA 2 cut(s) 57, 136
Hpy99I CGWCG 3 cut(s) 26, 136, 167
HpyAV CCTTC 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpySE526I ACGT 1 cut(s) 185
Hsp92I GRCGYC 1 cut(s) 131
Hsp92II CATG 2 cut(s) 34, 52
HspAI GCGC 3 cut(s) 86, 115, 197
LpnPI CCDG 3 cut(s) 25, 102, 169
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 114
MspI CCGG 2 cut(s) 12, 89
MspR9I CCNGG 1 cut(s) 90
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 121
NciI CCSGG 1 cut(s) 90
NcoI CCATGG 2 cut(s) 30, 48
NlaIII CATG 2 cut(s) 34, 52
NmuCI GTSAC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 40, 85
PshAI GACNNNNGTC 1 cut(s) 188
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SatI GCNGC 2 cut(s) 39, 84
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 1 cut(s) 156
SetI ASST 3 cut(s) 62, 176, 188
Sse9I AATT 1 cut(s) 118
SsiI CCGC 4 cut(s) 39, 81, 84, 111
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 2 cut(s) 30, 48
TaiI ACGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 150, 162
TasI AATT 1 cut(s) 118
TauI GCSGC 2 cut(s) 41, 86
TfiI GAWTC 1 cut(s) 159
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 17, 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.