AT5G42350

Contains the following InterPro domains F-box domain, cyclin-like (InterPro IPR001810), Galactose oxidase kelch, beta-propeller (InterPro IPR011043), Kelch repeat type 1 (InterPro IPR006652), Kelch related (InterPro IPR013089), Kelch-type beta propeller (InterPro IPR015915)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
16931531 .. 16934031
2501 bp
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UTR
Exon/CDS
Intron
AT5G42350.1

Sequence Viewer

Length: 1692 bp
ATGATGATTTCTGAGAAACCATTGGGAGTGGAGGAGTCTATACGGCAGGATCTGGAGGTTTTAACCGTGTCAAGGAGGCTTGTGAAAAGTGTTAGCCAGAAGTTGAAGAAAAAGATTCATAAAACTGAGGTGGTGGAAGATGAAGAGATTGCAAGGGGAGCGGTGAATTGTTTAAGTATCAGTGTTGGTTGCAGAGTTGCTGATACGGGTGAGGATTTTGAGGATTCAAGTAATAAGAGATGGTCTAGTGCTAGTGAGGAGGGTAAGGGATTGATGACAATTTGTGGAACTGAAGAAACTAGGTTAGATTGTTTTTCTTATGGGGTTAGAGAGAGGTTCTGGAAGAAGAATAATAGAAAATATCTAGCAGACTCGGGCCAGGATTACCGCAAGCACGTTTATCTTCCCGATGATATTCTGGAAATGTGTTTGATGAGGCTTCCTTTGACCAGCTTATTGAATGCACACCTTGTTTGCAAGAAATGGCAATCCATGGCCAACACTCAGCGGTTTCTCCAGATGAGACGAGAAGGCTCCTTTCAAACACCGTGGTTGTTTCTGTTTGCTGCTCTTAAAGATGGATGCTCCTCTGGTGATATTCACGGGTATGATGTTTCTCAGGACAAATGGCATAGGATTGAAACTGATCTACTTAAAGGCCGGTTTATGTACTCTGTGACGAGCATCCATGAGGAGATTTATATAGTTGGAGGTCGTTCTATGGACAGAAACTCTTTCAAGTCCCACAGAGGGATCTTGGTATTCAGCCCTTCGATCAAAGCATGGCGTAAAATTGCGTCTATGAGACATGCTAGATCACTTCCCATTGTTGGTGCCACTGAAGTTACTTCAGAGTTTTCGACCATGCAGACCAAACAGAATCGCCAAGATAGACGCTTTCACCTGTCAAGAGTTGGCGGAGAGTCAGACGTTTATGAAGACCCTCACAGGCTATCGGTAAGACGACAGAACAGAAACTCGGCTGATCAAAATGGAACCAAATCCCACAGATTAATAAGACAAAAGCTTGATCGGCTTAACCGAAACAGCTCCAAGAGATTTGTGCTCATTGCCATAGGAGGCACTGGCTTATTCGATGAGCCACTGGATTCAGGTGAAATATACGACTCAGCAACAAACACATGGTCAGAAATGCAGAGACTCCCGATGGGTTTTGGGGTTGTAAGTTGTGGGATTATATGCAATGGAATCTTCTATGCTTATTCTGAGAATGATAAGCTATCAGGGTATGACATTGAGAGAGGCTTCTGGATTACAATCCAAACATCTCCAATCCCTCCTCGGGTTCATGAGTTCTACCCTAAACTTGTCTCCTGCAACCATCGGTTGTTCATGCTCTCTGTTTCATGGTGCGATGAAGGAGATGGGCAAATTGGGAGGAGAAACAAGGCAGTGAGAAAGCTGTGGGAGTTGGATCTTGTGTACCTCACATGGACCGAGGTTTCAGTACACCCGGACGCACCAATGGATTGGAACGCCACATATGTCTCAGACCAGAACATACTAATGGGAATTGAGATGTTCAAGATCTTTGGGCAGGTATTAAGTTTCTTCACTGTCTGCGATGTATTAACTGAAGAAGCCTCTTGGAGACATGTTTCGAGGAACCAAAGGAGTCAAAAACTTAATCTATCTTGTACGAACAAGACCATTGCATTGCTTCATCTCTGA

Protein Analysis

563

Amino Acids

64.73

Weight (kDa)

8.81

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 135 - 172 1e-08 F-box domain
F-box-like PF12937 135 - 169 8.7e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1549
AccB1I GGYRCC 1 cut(s) 833
AccBSI CCGCTC 1 cut(s) 161
AciI CCGC 4 cut(s) 161, 388, 508, 918
AclWI GGATC 3 cut(s) 57, 761, 1443
AcoI YGGCCR 1 cut(s) 495
AcuI CTGAAG 4 cut(s) 312, 834, 861, 1617
AfaI GTAC 4 cut(s) 671, 1445, 1470, 1660
AfiI CCNNNNNNNGG 4 cut(s) 72, 750, 830, 1303
AflIII ACRYGT 1 cut(s) 1615
AgsI TTSAA 7 cut(s) 106, 228, 460, 542, 641, 739, 1546
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 5 cut(s) 453, 1027, 1050, 1240, 1423
AluI AGCT 5 cut(s) 453, 1027, 1050, 1240, 1423
Alw21I GWGCWC 1 cut(s) 1068
Alw26I GTCTC 6 cut(s) 517, 799, 1153, 1336, 1513, 1606
AlwI GGATC 3 cut(s) 57, 761, 1443
AlwNI CAGNNNCTG 1 cut(s) 52
Ama87I CYCGRG 2 cut(s) 373, 1302
AoxI GGCC 3 cut(s) 376, 495, 658
ApeKI GCWGC 1 cut(s) 566
ArsI GACNNNNNNTTYG 2 cut(s) 1130, 1162
AseI ATTAAT 1 cut(s) 1013
AspS9I GGNCC 2 cut(s) 376, 1455
AsuC2I CCSGG 1 cut(s) 1475
AsuHPI GGTGA 5 cut(s) 175, 221, 605, 893, 1127
AvaI CYCGRG 2 cut(s) 373, 1302
AvaII GGWCC 1 cut(s) 1455
BalI TGGCCA 1 cut(s) 497
BanI GGYRCC 1 cut(s) 833
BbsI GAAGAC 1 cut(s) 945
Bbv12I GWGCWC 1 cut(s) 1068
BbvI GCAGC 1 cut(s) 553
BccI CCATC 5 cut(s) 234, 572, 1162, 1350, 1379
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 380
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 1 cut(s) 1475
BcoDI GTCTC 6 cut(s) 517, 799, 1153, 1336, 1513, 1606
BfaI CTAG 5 cut(s) 246, 252, 300, 365, 813
BfuAI ACCTGC 1 cut(s) 1549
BglII AGATCT 1 cut(s) 1548
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
Bme1390I CCNGG 2 cut(s) 380, 1475
Bme18I GGWCC 1 cut(s) 1455
BmeT110I CYCGRG 2 cut(s) 373, 1302
BmgT120I GGNCC 2 cut(s) 376, 1455
BmiI GGNNCC 4 cut(s) 535, 835, 997, 1628
BmrFI CCNGG 2 cut(s) 380, 1475
BmsI GCATC 2 cut(s) 572, 693
BpiI GAAGAC 1 cut(s) 945
BpmI CTGGAG 2 cut(s) 74, 500
BpuMI CCSGG 1 cut(s) 1475
BsaBI GATNNNNATC 1 cut(s) 1277
BsaJI CCNNGG 4 cut(s) 492, 548, 1301, 1458
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 750, 830, 1303
Bse118I RCCGGY 1 cut(s) 660
Bse1I ACTGG 2 cut(s) 1090, 1110
Bse3DI GCAATG 4 cut(s) 1068, 1210, 1671, 1676
Bse8I GATNNNNATC 1 cut(s) 1277
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 4 cut(s) 492, 548, 1301, 1458
BseGI GGATG 2 cut(s) 587, 684
BseJI GATNNNNATC 1 cut(s) 1277
BseLI CCNNNNNNNGG 4 cut(s) 72, 750, 830, 1303
BseMI GCAATG 4 cut(s) 1068, 1210, 1671, 1676
BseMII CTCAG 6 cut(s) 117, 518, 632, 1143, 1218, 1524
BseNI ACTGG 2 cut(s) 1090, 1110
BseRI GAGGAG 6 cut(s) 47, 272, 577, 707, 1290, 1414
BseXI GCAGC 1 cut(s) 553
BshFI GGCC 3 cut(s) 378, 497, 660
BshNI GGYRCC 1 cut(s) 833
BsiHKAI GWGCWC 1 cut(s) 1068
BsiHKCI CYCGRG 2 cut(s) 373, 1302
BsiSI CCGG 2 cut(s) 661, 1475
BslFI GGGAC 1 cut(s) 727
BslI CCNNNNNNNGG 4 cut(s) 72, 750, 830, 1303
BsmAI GTCTC 6 cut(s) 517, 799, 1153, 1336, 1513, 1606
BsmBI CGTCTC 1 cut(s) 517
BsmFI GGGAC 1 cut(s) 727
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 3 cut(s) 378, 497, 660
BsoBI CYCGRG 2 cut(s) 373, 1302
Bsp1286I GDGCHC 1 cut(s) 1068
Bsp143I GATC 9 cut(s) 49, 646, 753, 774, 815, 985, 1030, 1435, 1548
Bsp19I CCATGG 1 cut(s) 492
BspACI CCGC 4 cut(s) 161, 388, 508, 918
BspANI GGCC 3 cut(s) 378, 497, 660
BspCNI CTCAG 7 cut(s) 4, 118, 517, 631, 1142, 1219, 1523
BspHI TCATGA 1 cut(s) 1309
BspLI GGNNCC 4 cut(s) 535, 835, 997, 1628
BspMI ACCTGC 1 cut(s) 1549
BspPI GGATC 3 cut(s) 57, 761, 1443
BspT107I GGYRCC 1 cut(s) 833
BsrBI CCGCTC 1 cut(s) 161
BsrDI GCAATG 4 cut(s) 1068, 1210, 1671, 1676
BsrFI RCCGGY 1 cut(s) 660
BsrI ACTGG 2 cut(s) 1090, 1110
BssAI RCCGGY 1 cut(s) 660
BssECI CCNNGG 4 cut(s) 492, 548, 1301, 1458
BssMI GATC 9 cut(s) 49, 646, 753, 774, 815, 985, 1030, 1435, 1548
BssT1I CCWWGG 1 cut(s) 492
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 3 cut(s) 67, 549, 1579
Bst6I CTCTTC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 7 cut(s) 12, 126, 504, 618, 1129, 1227, 1510
BstDSI CCRYGG 2 cut(s) 492, 548
BstF5I GGATG 2 cut(s) 587, 684
BstKTI GATC 9 cut(s) 52, 649, 756, 777, 818, 988, 1033, 1438, 1551
BstMAI GTCTC 6 cut(s) 517, 799, 1153, 1336, 1513, 1606
BstMBI GATC 9 cut(s) 49, 646, 753, 774, 815, 985, 1030, 1435, 1548
BstMWI GCNNNNNNNGC 2 cut(s) 158, 1033
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 2 cut(s) 812, 1619
BstSCI CCNGG 2 cut(s) 378, 1473
BstV1I GCAGC 1 cut(s) 553
BstV2I GAAGAC 1 cut(s) 945
BstX2I RGATCY 4 cut(s) 49, 753, 1435, 1548
BstXI CCANNNNNNTGG 1 cut(s) 1491
BstYI RGATCY 4 cut(s) 49, 753, 1435, 1548
BsuRI GGCC 3 cut(s) 378, 497, 660
BtgI CCRYGG 2 cut(s) 492, 548
BtgZI GCGATG 2 cut(s) 1389, 1599
BtsCI GGATG 2 cut(s) 587, 684
BtsI GCAGTG 1 cut(s) 1419
BtsIMutI CAGTG 6 cut(s) 187, 837, 1083, 1103, 1419, 1575
BveI ACCTGC 1 cut(s) 1549
Cac8I GCNNGC 1 cut(s) 392
CaiI CAGNNNCTG 1 cut(s) 52
CciI TCATGA 1 cut(s) 1309
Cfr10I RCCGGY 1 cut(s) 660
Cfr13I GGNCC 2 cut(s) 376, 1455
CseI GACGC 3 cut(s) 786, 903, 1487
Csp6I GTAC 4 cut(s) 670, 1444, 1469, 1659
CspCI CAANNNNNGTGG 2 cut(s) 530, 565
CviQI GTAC 4 cut(s) 670, 1444, 1469, 1659
DdeI CTNAG 7 cut(s) 12, 126, 504, 618, 1129, 1227, 1510
DpnI GATC 9 cut(s) 51, 648, 755, 776, 817, 987, 1032, 1437, 1550
DpnII GATC 9 cut(s) 49, 646, 753, 774, 815, 985, 1030, 1435, 1548
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 933
Eco130I CCWWGG 1 cut(s) 492
Eco47I GGWCC 1 cut(s) 1455
Eco57I CTGAAG 4 cut(s) 312, 834, 861, 1617
Eco88I CYCGRG 2 cut(s) 373, 1302
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 492
Esp3I CGTCTC 1 cut(s) 517
FaqI GGGAC 1 cut(s) 727
FauNDI CATATG 1 cut(s) 1504
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 2 cut(s) 594, 671
Fsp4HI GCNGC 1 cut(s) 567
FspBI CTAG 5 cut(s) 246, 252, 300, 365, 813
GluI GCNGC 1 cut(s) 567
GsuI CTGGAG 2 cut(s) 74, 500
HaeIII GGCC 3 cut(s) 378, 497, 660
HapII CCGG 2 cut(s) 661, 1475
HgaI GACGC 3 cut(s) 786, 903, 1487
HindIII AAGCTT 1 cut(s) 1025
HpaII CCGG 2 cut(s) 661, 1475
HphI GGTGA 5 cut(s) 175, 221, 605, 893, 1127
Hpy166II GTNNAC 2 cut(s) 1444, 1471
Hpy188I TCNGA 7 cut(s) 13, 853, 928, 1150, 1228, 1513, 1691
Hpy8I GTNNAC 2 cut(s) 1444, 1471
HpyAV CCTTC 3 cut(s) 524, 780, 1373
HpyCH4III ACNGT 3 cut(s) 67, 549, 1579
HpyCH4IV ACGT 2 cut(s) 396, 930
HpyCH4V TGCA 9 cut(s) 152, 192, 464, 477, 868, 1156, 1203, 1338, 1676
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 1033
HpyF3I CTNAG 7 cut(s) 12, 126, 504, 618, 1129, 1227, 1510
HpySE526I ACGT 2 cut(s) 396, 930
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 9 cut(s) 49, 646, 753, 774, 815, 985, 1030, 1435, 1548
LmnI GCTCC 4 cut(s) 158, 539, 590, 1055
Lsp1109I GCAGC 1 cut(s) 553
LweI GCATC 2 cut(s) 572, 693
MaeI CTAG 5 cut(s) 246, 252, 300, 365, 813
MaeII ACGT 2 cut(s) 396, 930
MaeIII GTNAC 2 cut(s) 676, 844
MalI GATC 9 cut(s) 51, 648, 755, 776, 817, 987, 1032, 1437, 1550
MbiI CCGCTC 1 cut(s) 161
MboI GATC 9 cut(s) 49, 646, 753, 774, 815, 985, 1030, 1435, 1548
MflI RGATCY 4 cut(s) 49, 753, 1435, 1548
MhlI GDGCHC 1 cut(s) 1068
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 5 cut(s) 166, 279, 792, 1392, 1533
MluNI TGGCCA 1 cut(s) 497
MlyI GAGTC 6 cut(s) 44, 365, 932, 1121, 1155, 1645
MmeI TCCRAC 2 cut(s) 688, 1413
Mox20I TGGCCA 1 cut(s) 497
MscI TGGCCA 1 cut(s) 497
MseI TTAA 9 cut(s) 62, 173, 573, 654, 1013, 1038, 1565, 1592, 1647
MslI CAYNNNNRTG 2 cut(s) 606, 1526
Msp20I TGGCCA 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 508
MspI CCGG 2 cut(s) 661, 1475
MspR9I CCNGG 2 cut(s) 380, 1475
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 2 cut(s) 158, 1033
NciI CCSGG 1 cut(s) 1475
NcoI CCATGG 1 cut(s) 492
NdeI CATATG 1 cut(s) 1504
NdeII GATC 9 cut(s) 49, 646, 753, 774, 815, 985, 1030, 1435, 1548
NlaIV GGNNCC 4 cut(s) 535, 835, 997, 1628
NmeAIII GCCGAG 1 cut(s) 959
NmuCI GTSAC 1 cut(s) 676
NspI RCATGY 2 cut(s) 812, 1619
PagI TCATGA 1 cut(s) 1309
PciI ACATGT 1 cut(s) 1615
PcsI WCGNNNNNNNCGW 1 cut(s) 1039
PctI GAATGC 1 cut(s) 466
PfeI GAWTC 5 cut(s) 115, 224, 880, 1109, 1209
PkrI GCNGC 1 cut(s) 568
PleI GAGTC 6 cut(s) 43, 365, 931, 1121, 1155, 1644
PpsI GAGTC 6 cut(s) 43, 365, 931, 1121, 1155, 1644
PscI ACATGT 1 cut(s) 1615
PshBI ATTAAT 1 cut(s) 1013
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 4 cut(s) 535, 835, 997, 1628
PspPI GGNCC 2 cut(s) 376, 1455
PstNI CAGNNNCTG 1 cut(s) 52
PsuI RGATCY 4 cut(s) 49, 753, 1435, 1548
RsaI GTAC 4 cut(s) 671, 1445, 1470, 1660
RsaNI GTAC 4 cut(s) 670, 1444, 1469, 1659
RseI CAYNNNNRTG 2 cut(s) 606, 1526
SaqAI TTAA 9 cut(s) 62, 173, 573, 654, 1013, 1038, 1565, 1592, 1647
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 9 cut(s) 49, 646, 753, 774, 815, 985, 1030, 1435, 1548
Sau96I GGNCC 2 cut(s) 376, 1455
SchI GAGTC 6 cut(s) 44, 365, 932, 1121, 1155, 1645
ScrFI CCNGG 2 cut(s) 380, 1475
SduI GDGCHC 1 cut(s) 1068
SfaNI GCATC 2 cut(s) 572, 693
SinI GGWCC 1 cut(s) 1455
SmiMI CAYNNNNRTG 2 cut(s) 606, 1526
Sse9I AATT 5 cut(s) 166, 279, 792, 1392, 1533
SsiI CCGC 4 cut(s) 161, 388, 508, 918
SspMI CTAG 5 cut(s) 246, 252, 300, 365, 813
StyD4I CCNGG 2 cut(s) 378, 1473
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 3 cut(s) 67, 549, 1579
TaiI ACGT 2 cut(s) 399, 933
TaqI TCGA 4 cut(s) 773, 860, 1095, 1622
TaqII GACCGA 1 cut(s) 1472
TasI AATT 5 cut(s) 166, 279, 792, 1392, 1533
TatI WGTACW 2 cut(s) 669, 1468
TfiI GAWTC 5 cut(s) 115, 224, 880, 1109, 1209
Tru1I TTAA 9 cut(s) 62, 173, 573, 654, 1013, 1038, 1565, 1592, 1647
Tru9I TTAA 9 cut(s) 62, 173, 573, 654, 1013, 1038, 1565, 1592, 1647
TscAI CASTG 6 cut(s) 187, 844, 1090, 1110, 1419, 1582
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 1 cut(s) 566
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 8 cut(s) 107, 156, 951, 1298, 1342, 1356, 1392, 1673
TspRI CASTG 6 cut(s) 187, 844, 1090, 1110, 1419, 1582
VpaK11BI GGWCC 1 cut(s) 1455
VspI ATTAAT 1 cut(s) 1013
XceI RCATGY 2 cut(s) 812, 1619
XspI CTAG 5 cut(s) 246, 252, 300, 365, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.