MD06G1007100.v1.1

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
722533 .. 725775
3243 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1007100.v1.1.491

Sequence Viewer

Length: 1743 bp
ATGTACTCTGGGAGACCATCTGGTGAAGAAAATCTTCATCAAGATTTTGAAGCTTTGCGTGTATCGAAGTGTCTGATGAGAAATGTTAGCCAGAAGTTGAGGAAGAAGAATCAGAGGTCTGTAGGAGATGAGGACAATGGTGTGAGGGGAATAGCTTTGAGATGTCTTACTCTGTATGGAAGGGGTGGAGGTTGCAAAGTTGGTGCTGACACATGTGATGATTTTGGGGATACAAGTAACAGGAGGAGGTCAAGTGCCAGTGATGAAGGCAAGGGATACAGACCAATATGTGGTACCGAGGAATCTGGAGTGGATTGCTTCTCATATGGGGTGAGGGAGAAATTTTGGAAGAAACATAACAGAAAGGATTTTGAGCTTGAAGAATCAATTATAAATAGCAGGATGCACATTTTTCTTCCAGATGATGTACTGGAAATGTGCTTGGTGAGGCTCCCACTAACCAGTCTCATGACTGCACGCCTTGTGTGCAAGAAATGGAAACACTTGACTACTACTCCTCGGTTCCTGCAGATGAGACGGGAAGGCTCACATCAGACCCCATGGTTGTTTCATTTTGGTGCTGTTAAAGATGATTATTGCTCTGGTGAGATACATGCATTGGATATGTCTCTAAATCAATGGCATAGTATAAATGCTGAAATCCTGAAGGGAAGGTTCATGTTTTCTGTTGCTAGTGTCCAGGATGATATTTATGTTGTTGGGGGTTGTTCAAGCTTGAACAACTTTGGGAGGGTGGATAGGAGCTCTTTTAAGACACACAAAGGGGTGATGCTGTTTAGTCCCTTAACAAAATCTTGGCGCAAAGTTGCTCCAATGAAGTATGCAAGATCAATGCCTATTTTAGGAGTTTCAGAGGTCACTTCAGATTTTTCCACCAGTCAAAGTTATCAAGGTCGCCAAGATAGACGTATTCCCAGATCACGGGTAGGTGGAGTTTCAGAGGTTTATGAAGATCCTCACAGGCTTTCTCTTAGGCGTCAACACAGACATTCTGCTGATGACAATGAGTCTTTGGTGTTGCCCAATAGAAAGTCGTATAAATTTATGAAACAAAAAAGTGATCACTCATCCATGAAGGGTTGTAGAAGGTTTGTGCTCGTTGCTGTTGGTGGTCTTGGCACCTGGGATGAACCTTTGGATTCTGGAGAAATATATGATTCTGTTTCAAGGAAATGGACAGAAATTCAAGGGTTCCCTGTGGACTTTGGGATTGCTTGTTCTGGGGTTGTTTGTAATGGGATGTTTTATATTTATTCTGAAACTGACAAGCTCGCAGGATATGACATAGAAAGGGGTTTCTGGATTGCAATCCAAACCACTCCTTTCCCACCCCGTGTTCATGAATATTACCCAAAACTGGTATCTTGTAATGGCAGGCTCTTCATGCTTTCTGTCTTCTGGTGCGAAGGGGATGGTCAGATAGGCCGGAGAAACAAGGCTGTTAGAAAGGTATGGGAGCTGGATCTCATGTACCTTAACTGGACCGAGGTCTCAGTACATCCCGATGCTCCAATGGACTGGAATGCTGCGTTTGTGGCAGACGGAAACATGATATTCGGTATTGAGATGTTCAAAATATTTGGTCAAGTATTGGATTTTTTTACTGTATGTGATGTGTCTGATACGGGGATGAAATGGAGTCATATCTCAAGGAACCATGTAACTCGCGAGCTGGATGCCTCTTCGTGCTTGACCAAGTCAATGGCTGTGCTACATCTGTAA

Protein Analysis

581

Amino Acids

66.13

Weight (kDa)

8.77

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 139 - 176 4e-09 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 156 - 242 6.5e-07 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_1 PF01344 225 - 280 2.3e-06 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
Acc65I GGTACC 1 cut(s) 293
AccB1I GGYRCC 2 cut(s) 293, 1139
AccB7I CCANNNNNTGG 1 cut(s) 290
AccII CGCG 1 cut(s) 1689
AclWI GGATC 2 cut(s) 968, 1491
AcsI RAATTY 3 cut(s) 341, 1061, 1203
AcuI CTGAAG 2 cut(s) 686, 867
AcyI GRCGYC 1 cut(s) 997
AdeI CACNNNGTG 1 cut(s) 1355
AfaI GTAC 5 cut(s) 5, 295, 429, 1493, 1518
AfiI CCNNNNNNNGG 4 cut(s) 290, 863, 942, 1378
AflIII ACRYGT 1 cut(s) 212
AgsI TTSAA 7 cut(s) 50, 380, 732, 739, 1188, 1208, 1594
AhdI GACNNNNNGTC 1 cut(s) 1027
AjnI CCWGG 2 cut(s) 699, 1142
AloI GAACNNNNNNTCC 2 cut(s) 1222, 1254
AluBI AGCT 8 cut(s) 53, 155, 376, 735, 765, 1291, 1480, 1693
AluI AGCT 8 cut(s) 53, 155, 376, 735, 765, 1291, 1480, 1693
Alw21I GWGCWC 2 cut(s) 767, 1119
Alw26I GTCTC 5 cut(s) 7, 470, 529, 633, 1516
AlwI GGATC 2 cut(s) 968, 1491
AoxI GGCC 1 cut(s) 1444
ApeKI GCWGC 1 cut(s) 1547
ApoI RAATTY 3 cut(s) 341, 1061, 1203
Asp700I GAANNNNTTC 1 cut(s) 33
Asp718I GGTACC 1 cut(s) 293
AspLEI GCGC 1 cut(s) 822
AspS9I GGNCC 1 cut(s) 1503
AsuHPI GGTGA 5 cut(s) 35, 343, 457, 617, 799
AvaII GGWCC 1 cut(s) 1503
BanI GGYRCC 2 cut(s) 293, 1139
BanII GRGCYC 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 1408
Bbv12I GWGCWC 2 cut(s) 767, 1119
BbvI GCAGC 1 cut(s) 1534
BccI CCATC 2 cut(s) 25, 1427
BcgI CGANNNNNNTGC 2 cut(s) 1679, 1713
BciT130I CCWGG 2 cut(s) 701, 1144
BciVI GTATCC 2 cut(s) 223, 269
BclI TGATCA 1 cut(s) 1081
BcoDI GTCTC 5 cut(s) 7, 470, 529, 633, 1516
BfaI CTAG 1 cut(s) 693
BfmI CTRYAG 2 cut(s) 120, 527
BfuI GTATCC 2 cut(s) 223, 269
BisI GCNGC 1 cut(s) 1548
BlsI GCNGC 1 cut(s) 1549
Bme1390I CCNGG 2 cut(s) 701, 1144
Bme18I GGWCC 1 cut(s) 1503
BmeRI GACNNNNNGTC 1 cut(s) 1027
BmgT120I GGNCC 1 cut(s) 1503
BmiI GGNNCC 6 cut(s) 295, 452, 524, 1141, 1214, 1676
BmrFI CCNGG 2 cut(s) 701, 1144
BmsI GCATC 4 cut(s) 393, 780, 1516, 1687
BoxI GACNNNNGTC 1 cut(s) 1508
BpiI GAAGAC 1 cut(s) 1408
BpmI CTGGAG 2 cut(s) 327, 1185
BpuEI CTTGAG 1 cut(s) 1654
BsaBI GATNNNNATC 1 cut(s) 1328
BsaHI GRCGYC 1 cut(s) 997
BsaI GGTCTC 2 cut(s) 7, 1516
BsaJI CCNNGG 5 cut(s) 297, 518, 560, 1143, 1506
BsaXI ACNNNNNCTCC 4 cut(s) 238, 268, 499, 529
Bsc4I CCNNNNNNNGG 4 cut(s) 290, 863, 942, 1378
Bse1I ACTGG 7 cut(s) 258, 435, 462, 897, 1383, 1505, 1544
Bse8I GATNNNNATC 1 cut(s) 1328
BseBI CCWGG 2 cut(s) 701, 1144
BseDI CCNNGG 5 cut(s) 297, 518, 560, 1143, 1506
BseGI GGATG 9 cut(s) 408, 709, 1088, 1153, 1266, 1438, 1519, 1656, 1702
BseJI GATNNNNATC 1 cut(s) 1328
BseLI CCNNNNNNNGG 4 cut(s) 290, 863, 942, 1378
BseMII CTCAG 1 cut(s) 1527
BseNI ACTGG 7 cut(s) 258, 435, 462, 897, 1383, 1505, 1544
BseRI GAGGAG 2 cut(s) 259, 507
BseXI GCAGC 1 cut(s) 1534
BsgI GTGCAG 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 1689
BshFI GGCC 1 cut(s) 1446
BshNI GGYRCC 2 cut(s) 293, 1139
BsiHKAI GWGCWC 2 cut(s) 767, 1119
BsiSI CCGG 1 cut(s) 1447
BslFI GGGAC 1 cut(s) 786
BslI CCNNNNNNNGG 4 cut(s) 290, 863, 942, 1378
BsmAI GTCTC 5 cut(s) 7, 470, 529, 633, 1516
BsmBI CGTCTC 1 cut(s) 529
BsmFI GGGAC 1 cut(s) 786
BsmI GAATGC 1 cut(s) 1549
BsnI GGCC 1 cut(s) 1446
Bso31I GGTCTC 2 cut(s) 7, 1516
Bsp1286I GDGCHC 2 cut(s) 767, 1119
Bsp143I GATC 5 cut(s) 848, 938, 973, 1081, 1483
Bsp19I CCATGG 1 cut(s) 560
Bsp68I TCGCGA 1 cut(s) 1689
BspANI GGCC 1 cut(s) 1446
BspCNI CTCAG 1 cut(s) 1526
BspFNI CGCG 1 cut(s) 1689
BspHI TCATGA 2 cut(s) 468, 1360
BspLI GGNNCC 6 cut(s) 295, 452, 524, 1141, 1214, 1676
BspMAI CTGCAG 1 cut(s) 531
BspPI GGATC 2 cut(s) 968, 1491
BspQI GCTCTTC 1 cut(s) 1406
BspT107I GGYRCC 2 cut(s) 293, 1139
BspTNI GGTCTC 2 cut(s) 7, 1516
BsrI ACTGG 7 cut(s) 258, 435, 462, 897, 1383, 1505, 1544
BssECI CCNNGG 5 cut(s) 297, 518, 560, 1143, 1506
BssMI GATC 5 cut(s) 848, 938, 973, 1081, 1483
BssNI GRCGYC 1 cut(s) 997
BssT1I CCWWGG 1 cut(s) 560
Bst2UI CCWGG 2 cut(s) 701, 1144
Bst4CI ACNGT 1 cut(s) 1627
Bst6I CTCTTC 2 cut(s) 1406, 1708
BstACI GRCGYC 1 cut(s) 997
BstC8I GCNNGC 4 cut(s) 478, 1293, 1397, 1691
BstDEI CTNAG 2 cut(s) 992, 1513
BstDSI CCRYGG 1 cut(s) 560
BstENI CCTNNNNNAGG 1 cut(s) 861
BstF5I GGATG 9 cut(s) 408, 709, 1088, 1153, 1266, 1438, 1519, 1656, 1702
BstFNI CGCG 1 cut(s) 1689
BstHHI GCGC 1 cut(s) 822
BstKTI GATC 5 cut(s) 851, 941, 976, 1084, 1486
BstMAI GTCTC 5 cut(s) 7, 470, 529, 633, 1516
BstMBI GATC 5 cut(s) 848, 938, 973, 1081, 1483
BstMWI GCNNNNNNNGC 3 cut(s) 486, 1405, 1556
BstNI CCWGG 2 cut(s) 701, 1144
BstNSI RCATGY 2 cut(s) 216, 617
BstPAI GACNNNNGTC 1 cut(s) 1508
BstSCI CCNGG 2 cut(s) 699, 1142
BstSFI CTRYAG 2 cut(s) 120, 527
BstUI CGCG 1 cut(s) 1689
BstV1I GCAGC 1 cut(s) 1534
BstV2I GAAGAC 1 cut(s) 1408
BstX2I RGATCY 2 cut(s) 973, 1483
BstXI CCANNNNNNTGG 2 cut(s) 1539, 1723
BstYI RGATCY 2 cut(s) 973, 1483
BsuI GTATCC 2 cut(s) 223, 269
BsuRI GGCC 1 cut(s) 1446
BtgI CCRYGG 1 cut(s) 560
BtsCI GGATG 9 cut(s) 408, 709, 1088, 1153, 1266, 1438, 1519, 1656, 1702
BtsIMutI CAGTG 1 cut(s) 265
BtuMI TCGCGA 1 cut(s) 1689
Cac8I GCNNGC 4 cut(s) 478, 1293, 1397, 1691
CciI TCATGA 2 cut(s) 468, 1360
CfoI GCGC 1 cut(s) 822
Cfr13I GGNCC 1 cut(s) 1503
CseI GACGC 1 cut(s) 986
Csp6I GTAC 5 cut(s) 4, 294, 428, 1492, 1517
CviQI GTAC 5 cut(s) 4, 294, 428, 1492, 1517
DdeI CTNAG 2 cut(s) 992, 1513
DpnI GATC 5 cut(s) 850, 940, 975, 1083, 1485
DpnII GATC 5 cut(s) 848, 938, 973, 1081, 1483
DraIII CACNNNGTG 1 cut(s) 1355
DriI GACNNNNNGTC 1 cut(s) 1027
Eam1104I CTCTTC 2 cut(s) 1406, 1708
Eam1105I GACNNNNNGTC 1 cut(s) 1027
EarI CTCTTC 2 cut(s) 1406, 1708
Ecl136II GAGCTC 1 cut(s) 765
Eco130I CCWWGG 1 cut(s) 560
Eco24I GRGCYC 1 cut(s) 767
Eco31I GGTCTC 2 cut(s) 7, 1516
Eco47I GGWCC 1 cut(s) 1503
Eco53kI GAGCTC 1 cut(s) 765
Eco57I CTGAAG 2 cut(s) 686, 867
EcoICRI GAGCTC 1 cut(s) 765
EcoNI CCTNNNNNAGG 1 cut(s) 861
EcoRII CCWGG 2 cut(s) 699, 1142
EcoT14I CCWWGG 1 cut(s) 560
EcoT22I ATGCAT 1 cut(s) 619
EcoT38I GRGCYC 1 cut(s) 767
ErhI CCWWGG 1 cut(s) 560
Esp3I CGTCTC 1 cut(s) 529
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FaqI GGGAC 1 cut(s) 786
FauNDI CATATG 1 cut(s) 325
FbaI TGATCA 1 cut(s) 1081
Fnu4HI GCNGC 1 cut(s) 1548
FokI GGATG 9 cut(s) 415, 716, 1075, 1160, 1273, 1445, 1506, 1663, 1709
FriOI GRGCYC 1 cut(s) 767
Fsp4HI GCNGC 1 cut(s) 1548
FspBI CTAG 1 cut(s) 693
GlaI GCGC 1 cut(s) 821
GluI GCNGC 1 cut(s) 1548
GsuI CTGGAG 2 cut(s) 327, 1185
HaeIII GGCC 1 cut(s) 1446
HapII CCGG 1 cut(s) 1447
HgaI GACGC 1 cut(s) 986
HhaI GCGC 1 cut(s) 822
Hin1I GRCGYC 1 cut(s) 997
Hin6I GCGC 1 cut(s) 820
HinP1I GCGC 1 cut(s) 820
HincII GTYRAC 1 cut(s) 1001
HindII GTYRAC 1 cut(s) 1001
HindIII AAGCTT 2 cut(s) 51, 733
HinfI GANTC 7 cut(s) 109, 302, 383, 1028, 1160, 1178, 1660
HpaII CCGG 1 cut(s) 1447
HphI GGTGA 5 cut(s) 35, 343, 457, 617, 799
Hpy166II GTNNAC 2 cut(s) 1001, 1222
Hpy188I TCNGA 9 cut(s) 75, 114, 555, 874, 886, 961, 1279, 1440, 1642
Hpy8I GTNNAC 2 cut(s) 1001, 1222
HpyAV CCTTC 8 cut(s) 174, 260, 536, 661, 666, 1090, 1101, 1421
HpyCH4III ACNGT 1 cut(s) 1627
HpyCH4IV ACGT 1 cut(s) 928
HpyCH4V TGCA 8 cut(s) 195, 406, 476, 489, 529, 617, 845, 1328
HpyF10VI GCNNNNNNNGC 3 cut(s) 486, 1405, 1556
HpyF3I CTNAG 2 cut(s) 992, 1513
HpySE526I ACGT 1 cut(s) 928
Hsp92I GRCGYC 1 cut(s) 997
HspAI GCGC 1 cut(s) 820
KpnI GGTACC 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 1081
Kzo9I GATC 5 cut(s) 848, 938, 973, 1081, 1483
LguI GCTCTTC 1 cut(s) 1406
LmnI GCTCC 5 cut(s) 456, 762, 835, 1477, 1534
Lsp1109I GCAGC 1 cut(s) 1534
LweI GCATC 4 cut(s) 393, 780, 1516, 1687
MaeI CTAG 1 cut(s) 693
MaeII ACGT 1 cut(s) 928
MaeIII GTNAC 3 cut(s) 236, 877, 1681
MalI GATC 5 cut(s) 850, 940, 975, 1083, 1485
MboI GATC 5 cut(s) 848, 938, 973, 1081, 1483
MflI RGATCY 2 cut(s) 973, 1483
MhlI GDGCHC 2 cut(s) 767, 1119
MluCI AATT 4 cut(s) 341, 387, 1061, 1203
MlyI GAGTC 2 cut(s) 1037, 1669
Mph1103I ATGCAT 1 cut(s) 619
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 4 cut(s) 585, 771, 806, 1497
MslI CAYNNNNRTG 2 cut(s) 576, 1524
MspI CCGG 1 cut(s) 1447
MspR9I CCNGG 2 cut(s) 701, 1144
Mva1269I GAATGC 1 cut(s) 1549
MvaI CCWGG 2 cut(s) 701, 1144
MvnI CGCG 1 cut(s) 1689
MwoI GCNNNNNNNGC 3 cut(s) 486, 1405, 1556
NcoI CCATGG 1 cut(s) 560
NdeI CATATG 1 cut(s) 325
NdeII GATC 5 cut(s) 848, 938, 973, 1081, 1483
NlaIV GGNNCC 6 cut(s) 295, 452, 524, 1141, 1214, 1676
NmuCI GTSAC 1 cut(s) 877
NruI TCGCGA 1 cut(s) 1689
NsiI ATGCAT 1 cut(s) 619
NspI RCATGY 2 cut(s) 216, 617
PagI TCATGA 2 cut(s) 468, 1360
PciI ACATGT 1 cut(s) 212
PciSI GCTCTTC 1 cut(s) 1406
PctI GAATGC 1 cut(s) 1549
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 5 cut(s) 109, 302, 383, 1160, 1178
PflFI GACNNNGTC 1 cut(s) 1717
PflMI CCANNNNNTGG 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 699
PkrI GCNGC 1 cut(s) 1549
PleI GAGTC 2 cut(s) 1036, 1668
PpsI GAGTC 2 cut(s) 1036, 1668
PscI ACATGT 1 cut(s) 212
PshAI GACNNNNGTC 1 cut(s) 1508
PsiI TTATAA 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 767
Psp6I CCWGG 2 cut(s) 699, 1142
PspGI CCWGG 2 cut(s) 699, 1142
PspN4I GGNNCC 6 cut(s) 295, 452, 524, 1141, 1214, 1676
PspPI GGNCC 1 cut(s) 1503
PstI CTGCAG 1 cut(s) 531
PsuI RGATCY 2 cut(s) 973, 1483
PsyI GACNNNGTC 1 cut(s) 1717
RruI TCGCGA 1 cut(s) 1689
RsaI GTAC 5 cut(s) 5, 295, 429, 1493, 1518
RsaNI GTAC 5 cut(s) 4, 294, 428, 1492, 1517
RseI CAYNNNNRTG 2 cut(s) 576, 1524
SacI GAGCTC 1 cut(s) 767
SapI GCTCTTC 1 cut(s) 1406
SaqAI TTAA 4 cut(s) 585, 771, 806, 1497
SatI GCNGC 1 cut(s) 1548
Sau3AI GATC 5 cut(s) 848, 938, 973, 1081, 1483
Sau96I GGNCC 1 cut(s) 1503
SchI GAGTC 2 cut(s) 1037, 1669
ScrFI CCNGG 2 cut(s) 701, 1144
SduI GDGCHC 2 cut(s) 767, 1119
SfaNI GCATC 4 cut(s) 393, 780, 1516, 1687
SfcI CTRYAG 2 cut(s) 120, 527
SinI GGWCC 1 cut(s) 1503
SmiMI CAYNNNNRTG 2 cut(s) 576, 1524
SmlI CTYRAG 1 cut(s) 1669
SmoI CTYRAG 1 cut(s) 1669
Sse9I AATT 4 cut(s) 341, 387, 1061, 1203
SspI AATATT 2 cut(s) 1367, 1599
SspMI CTAG 1 cut(s) 693
SstI GAGCTC 1 cut(s) 767
StyD4I CCNGG 2 cut(s) 699, 1142
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 1 cut(s) 1627
TaiI ACGT 1 cut(s) 931
TaqI TCGA 1 cut(s) 65
TaqII GACCGA 1 cut(s) 1520
TasI AATT 4 cut(s) 341, 387, 1061, 1203
TatI WGTACW 3 cut(s) 3, 427, 1516
TfiI GAWTC 5 cut(s) 109, 302, 383, 1160, 1178
Tru1I TTAA 4 cut(s) 585, 771, 806, 1497
Tru9I TTAA 4 cut(s) 585, 771, 806, 1497
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 877
TseI GCWGC 1 cut(s) 1547
Tsp45I GTSAC 1 cut(s) 877
TspGWI ACGGA 1 cut(s) 1578
TspRI CASTG 1 cut(s) 265
Tth111I GACNNNGTC 1 cut(s) 1717
Van91I CCANNNNNTGG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 1503
XagI CCTNNNNNAGG 1 cut(s) 861
XapI RAATTY 3 cut(s) 341, 1061, 1203
XceI RCATGY 2 cut(s) 216, 617
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 1 cut(s) 693
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.