FvH4_5g25640

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
17144452 .. 17148833
4382 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25640.t2

Sequence Viewer

Length: 1665 bp
ATGAGAAGTGTTAGCCAGAAAGTGAAGAAGAAGGGTCAGAAATCTGGAGAAGAGGAGGATGTCTTGAAGGGGATATCGTTGAGATGTCTTACCTTGTATGGTAGGGGTGGGGGGTGCAAAGTAGGCGCTGACACAGGTGATGAGTTTGGGGATCCAAGTACGAGGAGGAAGTCTAGTGCCAGTGATGAAGGAAAGGGATACAGACCTATATGTGGCACTGAGGAATCTGGGCTGGATTGCTTCTCATATGGGGTGAGGGAGCGATTTTGGAAGAAACATTACAGAAAGGAATTTGAGCTTGAAGAATCAATAAGACATAGCAGAATGCACATATTTCTTCCAGATGATATCCTGGAACTGTGCTTGGTGAGGCTCCCACTAACCAGTCTCATGACCGCCCGCCTTGTGTGTAAGAAATGGAAATGCTTGACTACTACTCCTCGATTTCTTCATATGAGACGGGAAGGTTCACATCGAAATCCGTGGTTGTTTCTGTTTGGTGCTGTCAAAAATGGTTATTGCTCTGGTGTGATACATGCGTTGGATGTGTCTTCAAACCAATGGCACGGGATAGATGCTGATATTCTAAAGGGAAGGTTCATGTTTTCTGTTGCTAGCATCCAGGATGATATTTATATTGTTGGAGGCTGTTCTAGCTTGAACAATTCTGGGAGGCTGGATAGGAGCTCATTTAAGACACACAGAGGGGTAATGATGTTTAGTCCCTTAACTAAGTCTTGGCGTAAAGTTGCATCTATGAAGCATGCAAGATCAACACCTGTATTAGGAGTTTCTGAGATCAGTCTTGATTTTTCAATCATTCAAAGCCACCACAATCGACAAGATAGGCGTATCCCCAGGTCACGGGTTGGTGGGGTGTCAGATGTTTATGAAGATCCTCACAGGTTGTCCCTGAGGCGTCAAAGCAGATATGCAGTTGACGGAAATGAATCTTCAATCTTGACCAGTCGAAGGTCATACAAGTTTATCAAACATAAAAATGATCACTCAGGCATGAAGGGTTATAGAAGATTTGTGCTCATTGCTGTAGGTGGTCTTGGACAATGGGATGAACCTTTGGATTCTGGAGAGATATATGATTCTGTATCAAATAAATGGACAGAAATTCAAAGGTTGCCTTTGGACTTTGGGGTCATTGCTTCTGGGGTTGTTTGTAACGGCATGTTTTATGTCTATTCTGAAACTGACAAACTTGCAGGATATGACATTGAACGGGATTTCTGGTTTGGGATCCAAACCAGTCCCTTCCCACCCCGTGTTCATGAATATTACCCAAAACTGGTATCTTGTAATGGCCGGCTGTTCATGCTCTCTGTCTTGTGGTGTGAAGGGGATGGTCAAATAGGCCGGAGAAACAAGGCTGTTAGAAAATTATGGGAGCTAGATCTCATGTATCTTAACTGGTATGAGGTCTCTGTGCATCCTGATGCTCCAATGGACTGGAATGCTGGGTTCATTGCAGATGGAAATCTGATATTTGGCATTGAGATGTTCAAAATATTTGGTCAAGTATTGGATTTTTTCACTGTATGTGATGTGTCTGACATGGGGATGAAATGGAGTCATATCTCAAGGAACCATGTTACTCGTGAACTGGATGCTTCTTCCTGCATGACAAAATCGATGGCTGTGCTGCATCTGTAA

Protein Analysis

555

Amino Acids

63.2

Weight (kDa)

9.07

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 113 - 150 3.5e-08 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 161 - 252 5.7e-06 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_1 PF01344 199 - 254 8.5e-07 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1151
AciI CCGC 2 cut(s) 396, 400
AclWI GGATC 5 cut(s) 146, 159, 890, 1246, 1259
AcoI YGGCCR 1 cut(s) 1315
AcsI RAATTY 2 cut(s) 290, 1125
AcyI GRCGYC 1 cut(s) 919
AdeI CACNNNGTG 1 cut(s) 1277
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 5 cut(s) 212, 785, 864, 972, 1300
AjnI CCWGG 3 cut(s) 351, 621, 857
AluBI AGCT 4 cut(s) 298, 657, 687, 1402
AluI AGCT 4 cut(s) 298, 657, 687, 1402
Alw21I GWGCWC 2 cut(s) 689, 1041
Alw26I GTCTC 3 cut(s) 392, 451, 1438
AlwI GGATC 5 cut(s) 146, 159, 890, 1246, 1259
AoxI GGCC 2 cut(s) 1315, 1366
ApeKI GCWGC 1 cut(s) 1654
ApoI RAATTY 2 cut(s) 290, 1125
AspLEI GCGC 1 cut(s) 128
AsuHPI GGTGA 3 cut(s) 149, 265, 379
AsuNHI GCTAGC 1 cut(s) 614
AxyI CCTNAGG 1 cut(s) 914
BaeI ACNNNNGTAYC 2 cut(s) 524, 557
BamHI GGATCC 2 cut(s) 151, 1251
BanII GRGCYC 1 cut(s) 689
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
BauI CACGAG 1 cut(s) 1608
BbsI GAAGAC 1 cut(s) 543
Bbv12I GWGCWC 2 cut(s) 689, 1041
BbvI GCAGC 1 cut(s) 1641
BccI CCATC 3 cut(s) 1349, 1478, 1639
BceAI ACGGC 1 cut(s) 1195
BcgI CGANNNNNNTGC 1 cut(s) 1633
BciT130I CCWGG 3 cut(s) 353, 623, 859
BciVI GTATCC 2 cut(s) 191, 863
BclI TGATCA 1 cut(s) 1003
BcoDI GTCTC 3 cut(s) 392, 451, 1438
BfaI CTAG 4 cut(s) 174, 615, 654, 1403
BfmI CTRYAG 1 cut(s) 1047
BfoI RGCGCY 1 cut(s) 129
BfuI GTATCC 2 cut(s) 191, 863
BglII AGATCT 1 cut(s) 1405
BisI GCNGC 1 cut(s) 1655
BlsI GCNGC 1 cut(s) 1656
Bme1390I CCNGG 3 cut(s) 353, 623, 859
BmiI GGNNCC 4 cut(s) 153, 374, 1253, 1598
BmrFI CCNGG 3 cut(s) 353, 623, 859
BmsI GCATC 6 cut(s) 565, 627, 761, 1438, 1450, 1609
BmtI GCTAGC 1 cut(s) 618
BpiI GAAGAC 1 cut(s) 543
BpmI CTGGAG 2 cut(s) 66, 1107
BpuEI CTTGAG 1 cut(s) 1576
Bsa29I ATCGAT 1 cut(s) 1643
BsaBI GATNNNNATC 1 cut(s) 1488
BsaHI GRCGYC 1 cut(s) 919
BsaI GGTCTC 1 cut(s) 1438
BsaJI CCNNGG 2 cut(s) 482, 857
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bsc4I CCNNNNNNNGG 5 cut(s) 212, 785, 864, 972, 1300
Bse118I RCCGGY 1 cut(s) 1317
Bse1I ACTGG 8 cut(s) 180, 384, 966, 1260, 1305, 1427, 1466, 1620
Bse21I CCTNAGG 1 cut(s) 914
Bse3DI GCAATG 3 cut(s) 1041, 1155, 1476
Bse8I GATNNNNATC 1 cut(s) 1488
BseBI CCWGG 3 cut(s) 353, 623, 859
BseCI ATCGAT 1 cut(s) 1643
BseDI CCNNGG 2 cut(s) 482, 857
BseGI GGATG 9 cut(s) 64, 550, 618, 631, 1075, 1360, 1441, 1578, 1624
BseJI GATNNNNATC 1 cut(s) 1488
BseLI CCNNNNNNNGG 5 cut(s) 212, 785, 864, 972, 1300
BseMI GCAATG 3 cut(s) 1041, 1155, 1476
BseMII CTCAG 4 cut(s) 210, 786, 905, 1023
BseNI ACTGG 8 cut(s) 180, 384, 966, 1260, 1305, 1427, 1466, 1620
BseRI GAGGAG 3 cut(s) 68, 178, 429
BseXI GCAGC 1 cut(s) 1641
BseYI CCCAGC 1 cut(s) 1469
BshFI GGCC 2 cut(s) 1317, 1368
BshVI ATCGAT 1 cut(s) 1643
BsiHKAI GWGCWC 2 cut(s) 689, 1041
BsiSI CCGG 2 cut(s) 1318, 1369
BslFI GGGAC 3 cut(s) 708, 895, 1248
BslI CCNNNNNNNGG 5 cut(s) 212, 785, 864, 972, 1300
BsmAI GTCTC 3 cut(s) 392, 451, 1438
BsmBI CGTCTC 1 cut(s) 451
BsmFI GGGAC 3 cut(s) 708, 895, 1248
BsmI GAATGC 2 cut(s) 330, 1471
BsnI GGCC 2 cut(s) 1317, 1368
Bso31I GGTCTC 1 cut(s) 1438
Bsp1286I GDGCHC 2 cut(s) 689, 1041
Bsp143I GATC 7 cut(s) 151, 770, 798, 895, 1003, 1251, 1405
BspACI CCGC 2 cut(s) 396, 400
BspANI GGCC 2 cut(s) 1317, 1368
BspCNI CTCAG 4 cut(s) 211, 787, 906, 1022
BspDI ATCGAT 1 cut(s) 1643
BspHI TCATGA 2 cut(s) 390, 1282
BspLI GGNNCC 4 cut(s) 153, 374, 1253, 1598
BspOI GCTAGC 1 cut(s) 618
BspPI GGATC 5 cut(s) 146, 159, 890, 1246, 1259
BspTNI GGTCTC 1 cut(s) 1438
BsrDI GCAATG 3 cut(s) 1041, 1155, 1476
BsrFI RCCGGY 1 cut(s) 1317
BsrI ACTGG 8 cut(s) 180, 384, 966, 1260, 1305, 1427, 1466, 1620
BssAI RCCGGY 1 cut(s) 1317
BssECI CCNNGG 2 cut(s) 482, 857
BssMI GATC 7 cut(s) 151, 770, 798, 895, 1003, 1251, 1405
BssNI GRCGYC 1 cut(s) 919
BssSI CACGAG 1 cut(s) 1608
Bst2BI CACGAG 1 cut(s) 1608
Bst2UI CCWGG 3 cut(s) 353, 623, 859
Bst4CI ACNGT 2 cut(s) 360, 1549
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 919
BstC8I GCNNGC 4 cut(s) 400, 616, 765, 1319
BstDEI CTNAG 5 cut(s) 219, 732, 795, 914, 1009
BstDSI CCRYGG 1 cut(s) 482
BstENI CCTNNNNNAGG 1 cut(s) 783
BstF5I GGATG 9 cut(s) 64, 550, 618, 631, 1075, 1360, 1441, 1578, 1624
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 7 cut(s) 154, 773, 801, 898, 1006, 1254, 1408
BstMAI GTCTC 3 cut(s) 392, 451, 1438
BstMBI GATC 7 cut(s) 151, 770, 798, 895, 1003, 1251, 1405
BstMWI GCNNNNNNNGC 3 cut(s) 123, 654, 1327
BstNI CCWGG 3 cut(s) 353, 623, 859
BstNSI RCATGY 3 cut(s) 539, 767, 1186
BstSCI CCNGG 3 cut(s) 351, 621, 857
BstSFI CTRYAG 1 cut(s) 1047
BstV1I GCAGC 1 cut(s) 1641
BstV2I GAAGAC 1 cut(s) 543
BstX2I RGATCY 4 cut(s) 151, 895, 1251, 1405
BstXI CCANNNNNNTGG 1 cut(s) 1461
BstYI RGATCY 4 cut(s) 151, 895, 1251, 1405
Bsu15I ATCGAT 1 cut(s) 1643
Bsu36I CCTNAGG 1 cut(s) 914
BsuI GTATCC 2 cut(s) 191, 863
BsuRI GGCC 2 cut(s) 1317, 1368
BsuTUI ATCGAT 1 cut(s) 1643
BtgI CCRYGG 1 cut(s) 482
BtsCI GGATG 9 cut(s) 64, 550, 618, 631, 1075, 1360, 1441, 1578, 1624
BtsIMutI CAGTG 3 cut(s) 187, 216, 1545
Cac8I GCNNGC 4 cut(s) 400, 616, 765, 1319
CciI TCATGA 2 cut(s) 390, 1282
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 1317
ClaI ATCGAT 1 cut(s) 1643
CseI GACGC 1 cut(s) 908
Csp6I GTAC 1 cut(s) 159
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 5 cut(s) 219, 732, 795, 914, 1009
DpnI GATC 7 cut(s) 153, 772, 800, 897, 1005, 1253, 1407
DpnII GATC 7 cut(s) 151, 770, 798, 895, 1003, 1251, 1405
DraIII CACNNNGTG 1 cut(s) 1277
DrdI GACNNNNNNGTC 1 cut(s) 1151
DseDI GACNNNNNNGTC 1 cut(s) 1151
EaeI YGGCCR 1 cut(s) 1315
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 689
Eco31I GGTCTC 1 cut(s) 1438
Eco32I GATATC 2 cut(s) 75, 349
Eco53kI GAGCTC 1 cut(s) 687
Eco81I CCTNAGG 1 cut(s) 914
EcoICRI GAGCTC 1 cut(s) 687
EcoNI CCTNNNNNAGG 1 cut(s) 783
EcoRII CCWGG 3 cut(s) 351, 621, 857
EcoRV GATATC 2 cut(s) 75, 349
EcoT38I GRGCYC 1 cut(s) 689
Esp3I CGTCTC 1 cut(s) 451
FalI AAGNNNNNCTT 2 cut(s) 1123, 1155
FaqI GGGAC 3 cut(s) 708, 895, 1248
FauI CCCGC 1 cut(s) 407
FauNDI CATATG 2 cut(s) 247, 453
FbaI TGATCA 1 cut(s) 1003
Fnu4HI GCNGC 1 cut(s) 1655
FokI GGATG 9 cut(s) 71, 557, 605, 638, 1082, 1367, 1428, 1585, 1631
FriOI GRGCYC 1 cut(s) 689
Fsp4HI GCNGC 1 cut(s) 1655
FspBI CTAG 4 cut(s) 174, 615, 654, 1403
GlaI GCGC 1 cut(s) 127
GluI GCNGC 1 cut(s) 1655
GsaI CCCAGC 1 cut(s) 1473
GsuI CTGGAG 2 cut(s) 66, 1107
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 1317, 1368
HapII CCGG 2 cut(s) 1318, 1369
HgaI GACGC 1 cut(s) 908
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 919
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 940
HindII GTYRAC 1 cut(s) 940
HinfI GANTC 6 cut(s) 224, 305, 950, 1082, 1100, 1582
HpaII CCGG 2 cut(s) 1318, 1369
HphI GGTGA 3 cut(s) 149, 265, 379
Hpy166II GTNNAC 3 cut(s) 470, 940, 1613
Hpy188I TCNGA 6 cut(s) 39, 796, 883, 1201, 1494, 1564
Hpy8I GTNNAC 3 cut(s) 470, 940, 1613
HpyAV CCTTC 9 cut(s) 25, 61, 182, 458, 588, 966, 1012, 1276, 1343
HpyCH4III ACNGT 2 cut(s) 360, 1549
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 654, 1327
HpyF3I CTNAG 5 cut(s) 219, 732, 795, 914, 1009
Hsp92I GRCGYC 1 cut(s) 919
HspAI GCGC 1 cut(s) 126
KroI GCCGGC 1 cut(s) 1317
KroNI GCCGGC 1 cut(s) 1319
Ksp22I TGATCA 1 cut(s) 1003
Kzo9I GATC 7 cut(s) 151, 770, 798, 895, 1003, 1251, 1405
LmnI GCTCC 5 cut(s) 259, 378, 684, 1399, 1456
Lsp1109I GCAGC 1 cut(s) 1641
LweI GCATC 6 cut(s) 565, 627, 761, 1438, 1450, 1609
MaeI CTAG 4 cut(s) 174, 615, 654, 1403
MaeIII GTNAC 3 cut(s) 861, 1175, 1603
MalI GATC 7 cut(s) 153, 772, 800, 897, 1005, 1253, 1407
MboI GATC 7 cut(s) 151, 770, 798, 895, 1003, 1251, 1405
MflI RGATCY 4 cut(s) 151, 895, 1251, 1405
MhlI GDGCHC 2 cut(s) 689, 1041
MluCI AATT 4 cut(s) 290, 664, 1125, 1391
MlyI GAGTC 1 cut(s) 1591
MmeI TCCRAC 2 cut(s) 522, 622
MroNI GCCGGC 1 cut(s) 1317
MseI TTAA 3 cut(s) 693, 728, 1419
MslI CAYNNNNRTG 4 cut(s) 999, 1446, 1508, 1571
MspI CCGG 2 cut(s) 1318, 1369
MspR9I CCNGG 3 cut(s) 353, 623, 859
Mva1269I GAATGC 2 cut(s) 330, 1471
MvaI CCWGG 3 cut(s) 353, 623, 859
MwoI GCNNNNNNNGC 3 cut(s) 123, 654, 1327
NaeI GCCGGC 1 cut(s) 1319
NdeI CATATG 2 cut(s) 247, 453
NdeII GATC 7 cut(s) 151, 770, 798, 895, 1003, 1251, 1405
NgoMIV GCCGGC 1 cut(s) 1317
NheI GCTAGC 1 cut(s) 614
NlaIV GGNNCC 4 cut(s) 153, 374, 1253, 1598
NmuCI GTSAC 1 cut(s) 861
NspI RCATGY 3 cut(s) 539, 767, 1186
PaeI GCATGC 1 cut(s) 767
PagI TCATGA 2 cut(s) 390, 1282
PctI GAATGC 2 cut(s) 330, 1471
PdiI GCCGGC 1 cut(s) 1319
PfeI GAWTC 5 cut(s) 224, 305, 950, 1082, 1100
PfoI TCCNGGA 2 cut(s) 351, 621
PkrI GCNGC 1 cut(s) 1656
PleI GAGTC 1 cut(s) 1590
PpsI GAGTC 1 cut(s) 1590
Psp124BI GAGCTC 1 cut(s) 689
Psp6I CCWGG 3 cut(s) 351, 621, 857
PspFI CCCAGC 1 cut(s) 1469
PspGI CCWGG 3 cut(s) 351, 621, 857
PspN4I GGNNCC 4 cut(s) 153, 374, 1253, 1598
PsuI RGATCY 4 cut(s) 151, 895, 1251, 1405
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
RseI CAYNNNNRTG 4 cut(s) 999, 1446, 1508, 1571
SacI GAGCTC 1 cut(s) 689
SaqAI TTAA 3 cut(s) 693, 728, 1419
SatI GCNGC 1 cut(s) 1655
Sau3AI GATC 7 cut(s) 151, 770, 798, 895, 1003, 1251, 1405
SchI GAGTC 1 cut(s) 1591
ScrFI CCNGG 3 cut(s) 353, 623, 859
SduI GDGCHC 2 cut(s) 689, 1041
SfaNI GCATC 6 cut(s) 565, 627, 761, 1438, 1450, 1609
SfcI CTRYAG 1 cut(s) 1047
SmiMI CAYNNNNRTG 4 cut(s) 999, 1446, 1508, 1571
SmlI CTYRAG 1 cut(s) 1591
SmoI CTYRAG 1 cut(s) 1591
SphI GCATGC 1 cut(s) 767
Sse9I AATT 4 cut(s) 290, 664, 1125, 1391
SsiI CCGC 2 cut(s) 396, 400
SspI AATATT 2 cut(s) 1289, 1521
SspMI CTAG 4 cut(s) 174, 615, 654, 1403
SstI GAGCTC 1 cut(s) 689
StyD4I CCNGG 3 cut(s) 351, 621, 857
TaaI ACNGT 2 cut(s) 360, 1549
TaqI TCGA 5 cut(s) 442, 475, 838, 970, 1643
TasI AATT 4 cut(s) 290, 664, 1125, 1391
TfiI GAWTC 5 cut(s) 224, 305, 950, 1082, 1100
Tru1I TTAA 3 cut(s) 693, 728, 1419
Tru9I TTAA 3 cut(s) 693, 728, 1419
TscAI CASTG 3 cut(s) 187, 223, 1552
TseFI GTSAC 1 cut(s) 861
TseI GCWGC 1 cut(s) 1654
Tsp45I GTSAC 1 cut(s) 861
TspGWI ACGGA 2 cut(s) 471, 957
TspRI CASTG 3 cut(s) 187, 223, 1552
XagI CCTNNNNNAGG 1 cut(s) 783
XapI RAATTY 2 cut(s) 290, 1125
XceI RCATGY 3 cut(s) 539, 767, 1186
XspI CTAG 4 cut(s) 174, 615, 654, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.