AT5G42680

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013549
Physical Location & Seq
Forward (+)
17114098 .. 17115571
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42680.1

Sequence Viewer

Length: 717 bp
ATGCCGATCCGATCTAACCCCTTCTTCAATATGGATAGCTCGGCCTTGCTCTCGCTCTTGCGGCACACGGGTACCTCCATGGACTCTAAAAGCTCGAAGAAATCTTCTGGAAGCATCGGTGGTGGGGTGCTTAAAATGTTCAAGCTCATACCAATGCTATCATCTGGTTGCAAGATGGTGAACTTGTTGAGTCGAGGGCATCGAAGACCCTTACTTAAAGACTACGCAACAACGGGAACAATATTCGGGTTTCGCAAAGGAAGAGTCTTTCTTGCTATACAAGAAGATCCTCATTGCCTGCCAATTTTCATCATCGAGCTCCCGATGCTGACTTCGGCGCTGCAAAAGGAGATGGCCTCGGAAACTGTTAGGATTGCTTTGGAAAGCGAGACAAAGACGTCGAGGAAGAAGGTGTTGGAGGAGTACGTGTGGGGGATTTACTGTAACGGACGGAAAATCGGGTATTCGATAAGGAGAAAGAACATGAGTGAGGAGGAGATGTATGTGATTGATGCATTGAGAGGTGTTTCCATGGGGGCTGGAGTTTTACCATGTAAGAACCAATATGATCAAGAGACAGAAGGAGAAATGACTTACATGAGAGCTCGATTCGATAGAGTGATTGGCTCTAAAGACTCTGAAGCATTGTATATGATCAACCCTGAAGGTAGTGGTCAGGGCACAGAGCTTAGTATTTACTTTCTCAGGTCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

238

Amino Acids

26.72

Weight (kDa)

9.31

Isoelectric Point (pI)

54.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 78 - 236 6.5e-65 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42680 AT5G42680
fragaria_vesca FvH4_2g34960
malus_domestica MD08G1107300.v1.1 MD15G1087900.v1.1
prunus_persica Prupe.1G441600_v2.0.a1
pyrus_communis pycom08g08920 pycom15g08250
rosa_chinensis RchiOBHm_Chr6g0307041
rosa_laevigata RLG00000010741
rosa_multiflora Rmu_sc0005634.1_g000008
rosa_roxburghii Rroxscaffold_7G00161220
rosa_rugosa Rorug06G0355400
rosa_samantha Rh6AG466800 Rh6BG433600 Rh6CG482400 Rh6DG468600
rosa_wichuraiana Rw6G040690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 397
AatII GACGTC 1 cut(s) 401
Acc65I GGTACC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 71
AciI CCGC 1 cut(s) 61
AclWI GGATC 1 cut(s) 281
AcuI CTGAAG 2 cut(s) 660, 684
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 2 cut(s) 73, 425
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 2 cut(s) 28, 142
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AluBI AGCT 6 cut(s) 39, 93, 145, 319, 605, 688
AluI AGCT 6 cut(s) 39, 93, 145, 319, 605, 688
Alw21I GWGCWC 2 cut(s) 321, 607
Alw26I GTCTC 2 cut(s) 383, 569
AlwI GGATC 1 cut(s) 281
AoxI GGCC 2 cut(s) 42, 354
ApeKI GCWGC 1 cut(s) 340
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
Asp718I GGTACC 1 cut(s) 71
AspLEI GCGC 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 683
BaeI ACNNNNGTAYC 2 cut(s) 55, 88
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 2 cut(s) 321, 607
BbsI GAAGAC 1 cut(s) 211
Bbv12I GWGCWC 2 cut(s) 321, 607
BbvI GCAGC 1 cut(s) 327
BccI CCATC 2 cut(s) 169, 346
BclI TGATCA 2 cut(s) 568, 654
BcoDI GTCTC 2 cut(s) 383, 569
BfoI RGCGCY 1 cut(s) 341
BisI GCNGC 2 cut(s) 62, 341
BlsI GCNGC 2 cut(s) 63, 342
BmiI GGNNCC 1 cut(s) 73
BmsI GCATC 4 cut(s) 123, 208, 315, 502
BpiI GAAGAC 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpmI CTGGAG 1 cut(s) 561
BsaAI YACGTR 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 398
BsaJI CCNNGG 3 cut(s) 78, 357, 531
BsaXI ACNNNNNCTCC 4 cut(s) 413, 443, 485, 515
Bse3DI GCAATG 1 cut(s) 292
BseDI CCNNGG 3 cut(s) 78, 357, 531
BseMI GCAATG 1 cut(s) 292
BseRI GAGGAG 3 cut(s) 434, 506, 509
BseSI GKGCMC 1 cut(s) 683
BseXI GCAGC 1 cut(s) 327
BshFI GGCC 2 cut(s) 44, 356
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 2 cut(s) 321, 607
BsmAI GTCTC 2 cut(s) 383, 569
BsnI GGCC 2 cut(s) 44, 356
Bsp1286I GDGCHC 3 cut(s) 321, 607, 683
Bsp143I GATC 5 cut(s) 6, 11, 286, 568, 654
Bsp19I CCATGG 2 cut(s) 78, 531
BspACI CCGC 1 cut(s) 61
BspANI GGCC 2 cut(s) 44, 356
BspCNI CTCAG 1 cut(s) 717
BspLI GGNNCC 1 cut(s) 73
BspPI GGATC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 292
BssECI CCNNGG 3 cut(s) 78, 357, 531
BssMI GATC 5 cut(s) 6, 11, 286, 568, 654
BssNI GRCGYC 1 cut(s) 398
BssT1I CCWWGG 2 cut(s) 78, 531
Bst4CI ACNGT 2 cut(s) 367, 443
Bst6I CTCTTC 1 cut(s) 256
BstACI GRCGYC 1 cut(s) 398
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 689, 704
BstDSI CCRYGG 2 cut(s) 78, 531
BstH2I RGCGCY 1 cut(s) 341
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 5 cut(s) 9, 14, 289, 571, 657
BstMAI GTCTC 2 cut(s) 383, 569
BstMBI GATC 5 cut(s) 6, 11, 286, 568, 654
BstMWI GCNNNNNNNGC 2 cut(s) 61, 325
BstSLI GKGCMC 1 cut(s) 683
BstV1I GCAGC 1 cut(s) 327
BstV2I GAAGAC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuRI GGCC 2 cut(s) 44, 356
BtgI CCRYGG 2 cut(s) 78, 531
Cac8I GCNNGC 1 cut(s) 299
CfoI GCGC 1 cut(s) 340
Csp6I GTAC 2 cut(s) 72, 424
CviAII CATG 5 cut(s) 79, 484, 532, 552, 598
CviQI GTAC 2 cut(s) 72, 424
DdeI CTNAG 2 cut(s) 689, 704
DpnI GATC 5 cut(s) 8, 13, 288, 570, 656
DpnII GATC 5 cut(s) 6, 11, 286, 568, 654
DrdI GACNNNNNNGTC 1 cut(s) 397
DseDI GACNNNNNNGTC 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Ecl136II GAGCTC 2 cut(s) 319, 605
Eco130I CCWWGG 2 cut(s) 78, 531
Eco24I GRGCYC 2 cut(s) 321, 607
Eco53kI GAGCTC 2 cut(s) 319, 605
Eco57I CTGAAG 2 cut(s) 660, 684
EcoICRI GAGCTC 2 cut(s) 319, 605
EcoT14I CCWWGG 2 cut(s) 78, 531
EcoT22I ATGCAT 1 cut(s) 517
EcoT38I GRGCYC 2 cut(s) 321, 607
ErhI CCWWGG 2 cut(s) 78, 531
FaeI CATG 5 cut(s) 82, 487, 535, 555, 601
FatI CATG 5 cut(s) 78, 483, 531, 551, 597
FbaI TGATCA 2 cut(s) 568, 654
Fnu4HI GCNGC 2 cut(s) 62, 341
FriOI GRGCYC 2 cut(s) 321, 607
Fsp4HI GCNGC 2 cut(s) 62, 341
GlaI GCGC 1 cut(s) 339
GluI GCNGC 2 cut(s) 62, 341
GsuI CTGGAG 1 cut(s) 561
HaeII RGCGCY 1 cut(s) 341
HaeIII GGCC 2 cut(s) 44, 356
HhaI GCGC 1 cut(s) 340
Hin1I GRCGYC 1 cut(s) 398
Hin1II CATG 5 cut(s) 82, 487, 535, 555, 601
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HinfI GANTC 5 cut(s) 83, 190, 264, 609, 635
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 11, 361, 640
Hpy188III TCNNGA 3 cut(s) 108, 322, 572
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 403
HpyAV CCTTC 4 cut(s) 31, 403, 575, 659
HpyCH4III ACNGT 2 cut(s) 367, 443
HpyCH4IV ACGT 2 cut(s) 398, 426
HpyCH4V TGCA 3 cut(s) 171, 343, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 325
HpyF3I CTNAG 2 cut(s) 689, 704
HpySE526I ACGT 2 cut(s) 398, 426
Hsp92I GRCGYC 1 cut(s) 398
Hsp92II CATG 5 cut(s) 82, 487, 535, 555, 601
HspAI GCGC 1 cut(s) 338
KpnI GGTACC 1 cut(s) 75
Ksp22I TGATCA 2 cut(s) 568, 654
Kzo9I GATC 5 cut(s) 6, 11, 286, 568, 654
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 7 cut(s) 93, 150, 311, 525, 662, 675, 691
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 4 cut(s) 123, 208, 315, 502
MaeII ACGT 2 cut(s) 398, 426
MaeIII GTNAC 1 cut(s) 443
MalI GATC 5 cut(s) 8, 13, 288, 570, 656
MboI GATC 5 cut(s) 6, 11, 286, 568, 654
MboII GAAGA 7 cut(s) 16, 96, 109, 216, 273, 296, 418
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 3 cut(s) 321, 607, 683
MluCI AATT 1 cut(s) 303
MlyI GAGTC 4 cut(s) 77, 199, 273, 629
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 9 cut(s) 85, 188, 300, 367, 396, 412, 484, 487, 515
Mph1103I ATGCAT 1 cut(s) 517
MseI TTAA 3 cut(s) 132, 216, 715
MslI CAYNNNNRTG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 61, 325
NcoI CCATGG 2 cut(s) 78, 531
NdeII GATC 5 cut(s) 6, 11, 286, 568, 654
NlaIII CATG 5 cut(s) 82, 487, 535, 555, 601
NlaIV GGNNCC 1 cut(s) 73
NmeAIII GCCGAG 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 517
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PfeI GAWTC 1 cut(s) 609
PkrI GCNGC 2 cut(s) 63, 342
PleI GAGTC 4 cut(s) 77, 198, 272, 629
PpsI GAGTC 4 cut(s) 77, 198, 272, 629
Ppu21I YACGTR 1 cut(s) 427
Psp124BI GAGCTC 2 cut(s) 321, 607
PspN4I GGNNCC 1 cut(s) 73
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 2 cut(s) 73, 425
RsaNI GTAC 2 cut(s) 72, 424
RseI CAYNNNNRTG 1 cut(s) 152
SacI GAGCTC 2 cut(s) 321, 607
SaqAI TTAA 3 cut(s) 132, 216, 715
SatI GCNGC 2 cut(s) 62, 341
Sau3AI GATC 5 cut(s) 6, 11, 286, 568, 654
SchI GAGTC 4 cut(s) 77, 199, 273, 629
SduI GDGCHC 3 cut(s) 321, 607, 683
SfaNI GCATC 4 cut(s) 123, 208, 315, 502
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 1 cut(s) 303
SsiI CCGC 1 cut(s) 61
SspI AATATT 1 cut(s) 243
SstI GAGCTC 2 cut(s) 321, 607
StyI CCWWGG 2 cut(s) 78, 531
TaaI ACNGT 2 cut(s) 367, 443
TaiI ACGT 2 cut(s) 401, 429
TaqI TCGA 8 cut(s) 95, 193, 202, 315, 401, 467, 607, 612
TasI AATT 1 cut(s) 303
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 1 cut(s) 609
Tru1I TTAA 3 cut(s) 132, 216, 715
Tru9I TTAA 3 cut(s) 132, 216, 715
TseI GCWGC 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 298
TspGWI ACGGA 2 cut(s) 462, 466
ZraI GACGTC 1 cut(s) 399
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.