Rh6BG433600

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013549
Physical Location & Seq
Forward (+)
65390784 .. 65392327
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG433600.1

Sequence Viewer

Length: 864 bp
ATGATGACGTGCCACGCAAATTTTTCTCCAACCTTCCCTTGTCTATATATATATTTCCAATCAGCGTACACAACCAGACAGTCATCTCTAACATATACCCTTCTACTCTTCCTTGAAACTGATATCATATCCAGAACCCCAACAATGCCATCTGTGCGCTCTAGCCCATTCTATAACATGGAAAACTCAGCCCTCTTTTCTTTGATCCGGCATACTACTACCACCAATTCCACAACCGAAAAGCGTTCATCAAAGTCTTCATCATCATCATCCGGAGGCCTCCTCAAGATGTTCAAACTCTTTCCCATGTTGACATCAGGTTGCAAAATGGTGGCTCTGTTGGGCAGACCCCGAAAGCCTCTACTCAAAGACCATGCCACAACAGGTACAATTTTTGGTTATCGCAAAGGCAGAGTGAGCCTGGCAATACAAGAAGACCCTCATTGCATGCCAATCTTTGTAATAGAGCTGCCAATGCACAGCAATGTTTTCCACAAGGAAATGGCATCGGATATAGTCCGAATCGCGCTGGAGAGCGAGACCAAGACGCACAAGAAGAAGTTGTTAGAGGAGTTTGTTTGGGCTGTGTATTGTAATGGGAGAAAAGTTGGGTATTCGATTAGGAGGAAGCAATTGTCAGAGGATGAGCTTCATGTTATGCAAACTTTGAGAGGGGTTTCAATGGGTGCGGGAGTACTTCCAAGTCCATCGGAGAAGGAATATGCAGCAGATGGGGAACTGACATATATAAGGGCAAGGTTTGATAGGGTGGTTGGATCAAAGGATTCTGAGTCTCTGTACATGATAAATCCAGATGGTGCAGTTGGCCCAGAATTGAGTATTTTCTTTGTAAGAGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

287

Amino Acids

32.3

Weight (kDa)

9.3

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 128 - 285 4.2e-67 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42680 AT5G42680
fragaria_vesca FvH4_2g34960
malus_domestica MD08G1107300.v1.1 MD15G1087900.v1.1
prunus_persica Prupe.1G441600_v2.0.a1
pyrus_communis pycom08g08920 pycom15g08250
rosa_chinensis RchiOBHm_Chr6g0307041
rosa_laevigata RLG00000010741
rosa_multiflora Rmu_sc0005634.1_g000008
rosa_roxburghii Rroxscaffold_7G00161220
rosa_rugosa Rorug06G0355400
rosa_samantha Rh6AG466800 Rh6BG433600 Rh6CG482400 Rh6DG468600
rosa_wichuraiana Rw6G040690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 527
AccIII TCCGGA 1 cut(s) 272
AciI CCGC 1 cut(s) 689
AclWI GGATC 2 cut(s) 199, 784
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 4 cut(s) 68, 388, 696, 800
AgsI TTSAA 3 cut(s) 116, 295, 681
AjiI CACGTC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 3 cut(s) 469, 649, 857
AluI AGCT 3 cut(s) 469, 649, 857
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 2 cut(s) 533, 798
AlwI GGATC 2 cut(s) 199, 784
Aor13HI TCCGGA 1 cut(s) 272
AoxI GGCC 2 cut(s) 277, 826
ApeKI GCWGC 2 cut(s) 469, 725
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 2 cut(s) 159, 529
AspS9I GGNCC 1 cut(s) 827
BanII GRGCYC 1 cut(s) 859
BbsI GAAGAC 2 cut(s) 249, 441
Bbv12I GWGCWC 1 cut(s) 859
BbvI GCAGC 2 cut(s) 456, 737
BccI CCATC 4 cut(s) 157, 715, 725, 809
BciT130I CCWGG 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 533, 798
BfaI CTAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 470, 726
BlsI GCNGC 2 cut(s) 471, 727
BmcAI AGTACT 1 cut(s) 696
Bme1390I CCNGG 1 cut(s) 422
BmgBI CACGTC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 827
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 515
BpiI GAAGAC 2 cut(s) 249, 441
BplI GAGNNNNNCTC 2 cut(s) 267, 299
BpmI CTGGAG 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 533
BsaWI WCCGGW 1 cut(s) 272
Bse3DI GCAATG 2 cut(s) 442, 490
BseAI TCCGGA 1 cut(s) 272
BseBI CCWGG 1 cut(s) 422
BseGI GGATG 2 cut(s) 269, 649
BseMI GCAATG 2 cut(s) 442, 490
BseMII CTCAG 2 cut(s) 201, 780
BseRI GAGGAG 2 cut(s) 272, 584
BseXI GCAGC 2 cut(s) 456, 737
BsgI GTGCAG 1 cut(s) 840
Bsh1236I CGCG 1 cut(s) 527
BshFI GGCC 2 cut(s) 279, 828
BsiHKAI GWGCWC 1 cut(s) 859
BsiSI CCGG 2 cut(s) 208, 273
BsmAI GTCTC 2 cut(s) 533, 798
BsnI GGCC 2 cut(s) 279, 828
Bso31I GGTCTC 1 cut(s) 533
Bsp1286I GDGCHC 1 cut(s) 859
Bsp13I TCCGGA 1 cut(s) 272
Bsp1407I TGTACA 1 cut(s) 798
Bsp143I GATC 2 cut(s) 204, 776
BspACI CCGC 1 cut(s) 689
BspANI GGCC 2 cut(s) 279, 828
BspCNI CTCAG 2 cut(s) 200, 781
BspEI TCCGGA 1 cut(s) 272
BspFNI CGCG 1 cut(s) 527
BspPI GGATC 2 cut(s) 199, 784
BspTNI GGTCTC 1 cut(s) 533
BsrDI GCAATG 2 cut(s) 442, 490
BsrGI TGTACA 1 cut(s) 798
BssMI GATC 2 cut(s) 204, 776
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 113
BstAUI TGTACA 1 cut(s) 798
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 2 cut(s) 187, 789
BstF5I GGATG 2 cut(s) 269, 649
BstFNI CGCG 1 cut(s) 527
BstHHI GCGC 2 cut(s) 159, 529
BstKTI GATC 2 cut(s) 207, 779
BstMAI GTCTC 2 cut(s) 533, 798
BstMBI GATC 2 cut(s) 204, 776
BstMWI GCNNNNNNNGC 3 cut(s) 154, 417, 475
BstNI CCWGG 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 451
BstSCI CCNGG 1 cut(s) 420
BstUI CGCG 1 cut(s) 527
BstV1I GCAGC 2 cut(s) 456, 737
BstV2I GAAGAC 2 cut(s) 249, 441
BsuRI GGCC 2 cut(s) 279, 828
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 2 cut(s) 269, 649
Cac8I GCNNGC 1 cut(s) 449
CfoI GCGC 2 cut(s) 159, 529
Cfr13I GGNCC 1 cut(s) 827
CseI GACGC 1 cut(s) 556
Csp6I GTAC 4 cut(s) 67, 387, 695, 799
CviAII CATG 6 cut(s) 178, 307, 374, 448, 653, 802
CviQI GTAC 4 cut(s) 67, 387, 695, 799
DdeI CTNAG 2 cut(s) 187, 789
DpnI GATC 2 cut(s) 206, 778
DpnII GATC 2 cut(s) 204, 776
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 857
Eco147I AGGCCT 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 859
Eco31I GGTCTC 1 cut(s) 533
Eco32I GATATC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 857
EcoICRI GAGCTC 1 cut(s) 857
EcoRII CCWGG 1 cut(s) 420
EcoRV GATATC 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 859
FaeI CATG 6 cut(s) 181, 310, 377, 451, 656, 805
FatI CATG 6 cut(s) 177, 306, 373, 447, 652, 801
FauI CCCGC 1 cut(s) 682
Fnu4HI GCNGC 2 cut(s) 470, 726
FokI GGATG 2 cut(s) 256, 656
FriOI GRGCYC 1 cut(s) 859
Fsp4HI GCNGC 2 cut(s) 470, 726
FspBI CTAG 1 cut(s) 162
GlaI GCGC 2 cut(s) 158, 528
GluI GCNGC 2 cut(s) 470, 726
GsuI CTGGAG 1 cut(s) 551
HaeIII GGCC 2 cut(s) 279, 828
HapII CCGG 2 cut(s) 208, 273
HgaI GACGC 1 cut(s) 556
HhaI GCGC 2 cut(s) 159, 529
Hin1II CATG 6 cut(s) 181, 310, 377, 451, 656, 805
Hin6I GCGC 2 cut(s) 157, 527
HinP1I GCGC 2 cut(s) 157, 527
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 3 cut(s) 522, 785, 791
HpaII CCGG 2 cut(s) 208, 273
Hpy166II GTNNAC 2 cut(s) 69, 312
Hpy188I TCNGA 5 cut(s) 511, 521, 640, 712, 790
Hpy188III TCNNGA 4 cut(s) 132, 273, 286, 812
Hpy8I GTNNAC 2 cut(s) 69, 312
HpyAV CCTTC 3 cut(s) 43, 110, 709
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 6 cut(s) 324, 447, 478, 661, 725, 821
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 417, 475
HpyF3I CTNAG 2 cut(s) 187, 789
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 6 cut(s) 181, 310, 377, 451, 656, 805
HspAI GCGC 2 cut(s) 157, 527
Kpn2I TCCGGA 1 cut(s) 272
Kzo9I GATC 2 cut(s) 204, 776
Lsp1109I GCAGC 2 cut(s) 456, 737
LweI GCATC 1 cut(s) 515
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 8
MalI GATC 2 cut(s) 206, 778
MboI GATC 2 cut(s) 204, 776
MboII GAAGA 4 cut(s) 100, 249, 446, 568
MfeI CAATTG 1 cut(s) 632
MhlI GDGCHC 1 cut(s) 859
MluCI AATT 5 cut(s) 19, 226, 390, 632, 833
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 2 cut(s) 53, 754
MroI TCCGGA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 483
MspI CCGG 2 cut(s) 208, 273
MspR9I CCNGG 1 cut(s) 422
MunI CAATTG 1 cut(s) 632
MvaI CCWGG 1 cut(s) 422
MvnI CGCG 1 cut(s) 527
MwoI GCNNNNNNNGC 3 cut(s) 154, 417, 475
NdeII GATC 2 cut(s) 204, 776
NlaIII CATG 6 cut(s) 181, 310, 377, 451, 656, 805
NspI RCATGY 1 cut(s) 451
PaeI GCATGC 1 cut(s) 451
PceI AGGCCT 1 cut(s) 279
PfeI GAWTC 2 cut(s) 522, 785
PkrI GCNGC 2 cut(s) 471, 727
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
Psp124BI GAGCTC 1 cut(s) 859
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspPI GGNCC 1 cut(s) 827
RsaI GTAC 4 cut(s) 68, 388, 696, 800
RsaNI GTAC 4 cut(s) 67, 387, 695, 799
RseI CAYNNNNRTG 1 cut(s) 483
SacI GAGCTC 1 cut(s) 859
SatI GCNGC 2 cut(s) 470, 726
Sau3AI GATC 2 cut(s) 204, 776
Sau96I GGNCC 1 cut(s) 827
ScaI AGTACT 1 cut(s) 696
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 1 cut(s) 859
SetI ASST 8 cut(s) 11, 35, 322, 388, 471, 651, 761, 859
SfaNI GCATC 1 cut(s) 515
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SphI GCATGC 1 cut(s) 451
Sse9I AATT 5 cut(s) 19, 226, 390, 632, 833
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 1 cut(s) 689
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 859
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 617
TasI AATT 5 cut(s) 19, 226, 390, 632, 833
TatI WGTACW 2 cut(s) 694, 798
TfiI GAWTC 2 cut(s) 522, 785
TseI GCWGC 2 cut(s) 469, 725
TspDTI ATGAA 3 cut(s) 237, 249, 641
XapI RAATTY 1 cut(s) 19
XceI RCATGY 1 cut(s) 451
XspI CTAG 1 cut(s) 162
ZrmI AGTACT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.