Rorug06G0355400

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013549
Physical Location & Seq
Forward (+)
50284513 .. 50286638
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0355400.1

Sequence Viewer

Length: 564 bp
ATGGGTATCGATTTGGTCGCCGGCGGCAAGAGCAAGAACACCAAGCGTACATCGCCTAGGTCTGAGGATATCTACCTCAAGCTCACAGTCAAGCTCTATGATTTCATCCACCGAAGGACCAAGAGTCATTTCAGCAAGGTGATTCGTCACAGGCTTTGCATGAGCAAGGTCAACAAGGCCCCTCTCTCGCTTTCCCGATTGATTCGGTATATGCAGGGCCATGAGGATAAGATTGCTGTGCTCGTCGGAACTGTCACCGACGATGTTCGCGTCGCCGAAGTCCCTGCTCTTAAGGTCACTGCTCTCAGGTTCACCGAAAGGGCTAGGGCTCGGATTGAGAAGGCTGGTGGAGAGTGCTTGACTTTTGACCAATTGGCTCTTAGAGCTCCTCTTGGCCAGAACACGATGCTTCTGAGAGGACCAAAGAATGCCCGTGAAGCTGTGAAGCATTTCGGTCCAGCACCTGGTGTCCCACACAGCCACACCAAGCCATATGTGCGATCAAAGGGCAGGAAATTCGAGAAGGCCAGAGGAAAAAGGAACAGCCGTGGTTTCCGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

187

Amino Acids

21.07

Weight (kDa)

11.01

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18 PF17135 2 - 187 3.8e-89 Ribosomal protein 60S L18 and 50S L18e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42680 AT5G42680
fragaria_vesca FvH4_2g34960
malus_domestica MD08G1107300.v1.1 MD15G1087900.v1.1
prunus_persica Prupe.1G441600_v2.0.a1
pyrus_communis pycom08g08920 pycom15g08250
rosa_chinensis RchiOBHm_Chr6g0307041
rosa_laevigata RLG00000010741
rosa_multiflora Rmu_sc0005634.1_g000008
rosa_roxburghii Rroxscaffold_7G00161220
rosa_rugosa Rorug06G0355400
rosa_samantha Rh6AG466800 Rh6BG433600 Rh6CG482400 Rh6DG468600
rosa_wichuraiana Rw6G040690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 464
AccII CGCG 1 cut(s) 270
AciI CCGC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 394
AcsI RAATTY 1 cut(s) 515
AdeI CACNNNGTG 1 cut(s) 467
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 464
AflII CTTAAG 1 cut(s) 290
AhdI GACNNNNNGTC 1 cut(s) 123
AjnI CCWGG 1 cut(s) 463
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 4 cut(s) 82, 94, 386, 440
AluI AGCT 4 cut(s) 82, 94, 386, 440
Alw21I GWGCWC 2 cut(s) 243, 388
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 4 cut(s) 177, 217, 394, 525
ApoI RAATTY 1 cut(s) 515
Asp700I GAANNNNTTC 1 cut(s) 449
AspA2I CCTAGG 1 cut(s) 56
AspS9I GGNCC 5 cut(s) 117, 178, 217, 419, 455
AsuHPI GGTGA 3 cut(s) 151, 247, 304
AvaII GGWCC 3 cut(s) 117, 419, 455
AvrII CCTAGG 1 cut(s) 56
BalI TGGCCA 1 cut(s) 396
BanII GRGCYC 2 cut(s) 331, 388
Bbv12I GWGCWC 2 cut(s) 243, 388
BceAI ACGGC 1 cut(s) 531
BcgI CGANNNNNNTGC 4 cut(s) 266, 300, 499, 533
BciT130I CCWGG 1 cut(s) 465
BfaI CTAG 2 cut(s) 57, 324
BfrI CTTAAG 1 cut(s) 290
BisI GCNGC 1 cut(s) 25
BlnI CCTAGG 1 cut(s) 56
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 3 cut(s) 117, 419, 455
BmeRI GACNNNNNGTC 1 cut(s) 123
BmgT120I GGNCC 5 cut(s) 117, 178, 217, 419, 455
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 465
BmsI GCATC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 56, 547
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse118I RCCGGY 1 cut(s) 20
BseBI CCWGG 1 cut(s) 465
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 56, 547
BseGI GGATG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMII CTCAG 3 cut(s) 54, 319, 404
BseRI GAGGAG 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 4 cut(s) 179, 219, 396, 527
BshVI ATCGAT 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 243, 388
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 2 cut(s) 266, 455
BslI CCNNNNNNNGG 1 cut(s) 464
BsmFI GGGAC 2 cut(s) 266, 455
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 4 cut(s) 179, 219, 396, 527
Bsp1286I GDGCHC 3 cut(s) 243, 331, 388
Bsp143I GATC 1 cut(s) 500
BspACI CCGC 1 cut(s) 24
BspANI GGCC 4 cut(s) 179, 219, 396, 527
BspCNI CTCAG 3 cut(s) 55, 318, 405
BspDI ATCGAT 1 cut(s) 9
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 180
BspTI CTTAAG 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 56, 547
BssMI GATC 1 cut(s) 500
BssT1I CCWWGG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 2 cut(s) 88, 253
BstAFI CTTAAG 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 4 cut(s) 63, 305, 380, 413
BstDSI CCRYGG 1 cut(s) 547
BstF5I GGATG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 1 cut(s) 503
BstMBI GATC 1 cut(s) 500
BstMWI GCNNNNNNNGC 5 cut(s) 30, 52, 383, 437, 496
BstNI CCWGG 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 463
BstUI CGCG 1 cut(s) 270
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 4 cut(s) 179, 219, 396, 527
BsuTUI ATCGAT 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 547
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 22
CaiI CAGNNNCTG 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 5 cut(s) 117, 178, 217, 419, 455
ClaI ATCGAT 1 cut(s) 9
CseI GACGC 1 cut(s) 259
CsiI ACCWGGT 1 cut(s) 463
Csp6I GTAC 1 cut(s) 48
CviAII CATG 2 cut(s) 160, 221
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 4 cut(s) 63, 305, 380, 413
DpnI GATC 1 cut(s) 502
DpnII GATC 1 cut(s) 500
DraIII CACNNNGTG 1 cut(s) 467
DriI GACNNNNNGTC 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 394
Eam1105I GACNNNNNGTC 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 2 cut(s) 331, 388
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 3 cut(s) 117, 419, 455
Eco53kI GAGCTC 1 cut(s) 386
EcoICRI GAGCTC 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 463
EcoRV GATATC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 2 cut(s) 331, 388
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 2 cut(s) 163, 224
FaiI YATR 7 cut(s) 99, 161, 210, 212, 222, 493, 495
FaqI GGGAC 2 cut(s) 266, 455
FatI CATG 2 cut(s) 159, 220
FauNDI CATATG 1 cut(s) 493
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 2 cut(s) 331, 388
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 2 cut(s) 57, 324
GluI GCNGC 1 cut(s) 25
HaeIII GGCC 4 cut(s) 179, 219, 396, 527
HapII CCGG 1 cut(s) 21
HgaI GACGC 1 cut(s) 259
Hin1II CATG 2 cut(s) 163, 224
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 3 cut(s) 124, 142, 202
HpaII CCGG 1 cut(s) 21
HphI GGTGA 3 cut(s) 151, 247, 304
Hpy166II GTNNAC 2 cut(s) 172, 312
Hpy188I TCNGA 4 cut(s) 64, 248, 333, 414
Hpy188III TCNNGA 2 cut(s) 195, 520
Hpy8I GTNNAC 2 cut(s) 172, 312
Hpy99I CGWCG 3 cut(s) 248, 263, 275
HpyAV CCTTC 3 cut(s) 108, 334, 517
HpyCH4III ACNGT 2 cut(s) 88, 253
HpyCH4V TGCA 2 cut(s) 159, 214
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 52, 383, 437, 496
HpyF3I CTNAG 4 cut(s) 63, 305, 380, 413
Hsp92II CATG 2 cut(s) 163, 224
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 500
LmnI GCTCC 1 cut(s) 391
LweI GCATC 1 cut(s) 396
MabI ACCWGGT 1 cut(s) 463
MaeI CTAG 2 cut(s) 57, 324
MaeIII GTNAC 3 cut(s) 146, 253, 295
MalI GATC 1 cut(s) 502
MboI GATC 1 cut(s) 500
MfeI CAATTG 1 cut(s) 371
MhlI GDGCHC 3 cut(s) 243, 331, 388
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 2 cut(s) 371, 515
MluNI TGGCCA 1 cut(s) 396
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 7 cut(s) 58, 86, 192, 217, 399, 410, 524
Mox20I TGGCCA 1 cut(s) 396
MreI CGCCGGCG 1 cut(s) 20
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 449
MscI TGGCCA 1 cut(s) 396
MseI TTAA 1 cut(s) 291
Msp20I TGGCCA 1 cut(s) 396
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 465
MunI CAATTG 1 cut(s) 371
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 1 cut(s) 465
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 5 cut(s) 30, 52, 383, 437, 496
NaeI GCCGGC 1 cut(s) 22
NdeI CATATG 1 cut(s) 493
NdeII GATC 1 cut(s) 500
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 2 cut(s) 163, 224
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 3 cut(s) 146, 253, 295
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 433
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 2 cut(s) 142, 202
PflMI CCANNNNNTGG 1 cut(s) 464
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 388
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 5 cut(s) 117, 178, 217, 419, 455
PstNI CAGNNNCTG 1 cut(s) 464
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SacI GAGCTC 1 cut(s) 388
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 500
Sau96I GGNCC 5 cut(s) 117, 178, 217, 419, 455
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 3 cut(s) 243, 331, 388
SexAI ACCWGGT 1 cut(s) 463
SfaNI GCATC 1 cut(s) 396
SgrAI CRCCGGYG 1 cut(s) 20
SinI GGWCC 3 cut(s) 117, 419, 455
SmlI CTYRAG 2 cut(s) 77, 290
SmoI CTYRAG 2 cut(s) 77, 290
Sse9I AATT 2 cut(s) 371, 515
SsiI CCGC 1 cut(s) 24
SspMI CTAG 2 cut(s) 57, 324
SstI GAGCTC 1 cut(s) 388
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 88, 253
TaqI TCGA 2 cut(s) 9, 519
TaqII GACCGA 1 cut(s) 443
TasI AATT 2 cut(s) 371, 515
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 2 cut(s) 142, 202
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 3 cut(s) 146, 253, 295
Tsp45I GTSAC 3 cut(s) 146, 253, 295
TspDTI ATGAA 1 cut(s) 94
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 1 cut(s) 304
Van91I CCANNNNNTGG 1 cut(s) 464
Vha464I CTTAAG 1 cut(s) 290
VpaK11BI GGWCC 3 cut(s) 117, 419, 455
XapI RAATTY 1 cut(s) 515
XmaJI CCTAGG 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 449
XspI CTAG 2 cut(s) 57, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.