FvH4_2g34960

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013549
Physical Location & Seq
Forward (+)
25876955 .. 25877999
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34960.t1

Sequence Viewer

Length: 726 bp
ATGCCATCTGTGCGCTCTAGCCCGTTCTATAACATGGAAAACTCAGCCCTCTTTTCTTTGATCCGGCATACTAGCACTAGTAGTACCAATTCCACATCCGAAAAGCGTTCCTCAAAGTCTTCAAAATCATCATCGGGAGGCCTCCTCAAGATGTTCAAACTCTTCCCCATGTTGACATCAGGCTGCAAAATGGTTGCTCTATTAGGCAGACCCCGAAAGCCTCTACTCAAAGATCATGCCACAACTGGTACAATTTTCGGTTACCGCAAAGGCAGAGTGAGCCTGGCAATACAAGAAGACCCTCATTGCATGCCGATCTTTGTGATAGAGCTGCCAATGCACAGCAATGTGTTCCACAAGGAAATGGCATCGGATATAGTCCGAATCGCGCTGGAGAGCGAGACCAAGACGCATAAGAAGAAGTTGATGGAGGAGTTTGTTTGGGCTGTGTATTGCAATGGGAGAAAAGTTGGGTATTCTATTAGGAGGCAGCAAATGTCAGAGGATGAGCTTCATGTTATGCAAACTTTGAGAGGGGTTTCAATGGGTGCCGGAGTACTTCCAAGTCCATCAGAGAAGGAATATGCAGCTGATGGAGAATTAACATACATAAGAGCAAGGTTTGATAGGGTGGTTGGATCAAAGGATTCTGAGTCTTTGTACATGATCAATCCTGATGGAGCAGCTGGCCCAGAATTGAGTATTTTCTTTGTAAGAGCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

242

Amino Acids

26.91

Weight (kDa)

9.49

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 82 - 239 5.6e-68 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42680 AT5G42680
fragaria_vesca FvH4_2g34960
malus_domestica MD08G1107300.v1.1 MD15G1087900.v1.1
prunus_persica Prupe.1G441600_v2.0.a1
pyrus_communis pycom08g08920 pycom15g08250
rosa_chinensis RchiOBHm_Chr6g0307041
rosa_laevigata RLG00000010741
rosa_multiflora Rmu_sc0005634.1_g000008
rosa_roxburghii Rroxscaffold_7G00161220
rosa_rugosa Rorug06G0355400
rosa_samantha Rh6AG466800 Rh6BG433600 Rh6CG482400 Rh6DG468600
rosa_wichuraiana Rw6G040690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 548
AccII CGCG 1 cut(s) 389
AciI CCGC 1 cut(s) 265
AclWI GGATC 2 cut(s) 55, 646
AfaI GTAC 4 cut(s) 85, 250, 558, 662
AgsI TTSAA 3 cut(s) 123, 157, 543
AhlI ACTAGT 1 cut(s) 77
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 5 cut(s) 331, 511, 590, 686, 719
AluI AGCT 5 cut(s) 331, 511, 590, 686, 719
Alw21I GWGCWC 1 cut(s) 721
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 2 cut(s) 55, 646
AoxI GGCC 2 cut(s) 139, 688
ApeKI GCWGC 5 cut(s) 183, 331, 490, 587, 683
AspLEI GCGC 2 cut(s) 15, 391
AspS9I GGNCC 1 cut(s) 689
BanI GGYRCC 1 cut(s) 548
BanII GRGCYC 1 cut(s) 721
BbsI GAAGAC 2 cut(s) 111, 303
Bbv12I GWGCWC 1 cut(s) 721
BbvI GCAGC 5 cut(s) 170, 318, 502, 599, 695
BccI CCATC 5 cut(s) 13, 421, 577, 587, 671
BciT130I CCWGG 1 cut(s) 284
BclI TGATCA 1 cut(s) 666
BcoDI GTCTC 1 cut(s) 395
BcuI ACTAGT 1 cut(s) 77
BfaI CTAG 3 cut(s) 18, 72, 78
BisI GCNGC 5 cut(s) 184, 332, 491, 588, 684
BlsI GCNGC 5 cut(s) 185, 333, 492, 589, 685
BmcAI AGTACT 1 cut(s) 558
Bme1390I CCNGG 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 1 cut(s) 550
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 1 cut(s) 377
BpiI GAAGAC 2 cut(s) 111, 303
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpmI CTGGAG 1 cut(s) 413
BpuEI CTTGAG 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 3 cut(s) 304, 352, 463
BseBI CCWGG 1 cut(s) 284
BseGI GGATG 2 cut(s) 95, 511
BseMI GCAATG 3 cut(s) 304, 352, 463
BseMII CTCAG 2 cut(s) 57, 642
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 2 cut(s) 134, 446
BseXI GCAGC 5 cut(s) 170, 318, 502, 599, 695
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 2 cut(s) 141, 690
BshNI GGYRCC 1 cut(s) 548
BsiHKAI GWGCWC 1 cut(s) 721
BsiSI CCGG 2 cut(s) 64, 552
BsmAI GTCTC 1 cut(s) 395
BsnI GGCC 2 cut(s) 141, 690
Bso31I GGTCTC 1 cut(s) 395
Bsp1286I GDGCHC 1 cut(s) 721
Bsp1407I TGTACA 1 cut(s) 660
Bsp143I GATC 5 cut(s) 60, 232, 315, 638, 666
BspACI CCGC 1 cut(s) 265
BspANI GGCC 2 cut(s) 141, 690
BspCNI CTCAG 2 cut(s) 56, 643
BspFNI CGCG 1 cut(s) 389
BspLI GGNNCC 1 cut(s) 550
BspPI GGATC 2 cut(s) 55, 646
BspT107I GGYRCC 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 395
BsrDI GCAATG 3 cut(s) 304, 352, 463
BsrGI TGTACA 1 cut(s) 660
BsrI ACTGG 1 cut(s) 250
BssMI GATC 5 cut(s) 60, 232, 315, 638, 666
Bst2UI CCWGG 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 660
BstC8I GCNNGC 2 cut(s) 311, 688
BstDEI CTNAG 3 cut(s) 43, 651, 720
BstEII GGTNACC 1 cut(s) 260
BstF5I GGATG 2 cut(s) 95, 511
BstFNI CGCG 1 cut(s) 389
BstHHI GCGC 2 cut(s) 15, 391
BstKTI GATC 5 cut(s) 63, 235, 318, 641, 669
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 5 cut(s) 60, 232, 315, 638, 666
BstMWI GCNNNNNNNGC 3 cut(s) 10, 279, 337
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 313
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 282
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 5 cut(s) 170, 318, 502, 599, 695
BstV2I GAAGAC 2 cut(s) 111, 303
BsuRI GGCC 2 cut(s) 141, 690
BtsCI GGATG 2 cut(s) 95, 511
Cac8I GCNNGC 2 cut(s) 311, 688
CfoI GCGC 2 cut(s) 15, 391
Cfr13I GGNCC 1 cut(s) 689
CseI GACGC 1 cut(s) 418
Csp6I GTAC 4 cut(s) 84, 249, 557, 661
CviAII CATG 6 cut(s) 34, 169, 236, 310, 515, 664
CviQI GTAC 4 cut(s) 84, 249, 557, 661
DdeI CTNAG 3 cut(s) 43, 651, 720
DpnI GATC 5 cut(s) 62, 234, 317, 640, 668
DpnII GATC 5 cut(s) 60, 232, 315, 638, 666
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 719
Eco147I AGGCCT 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 721
Eco31I GGTCTC 1 cut(s) 395
Eco53kI GAGCTC 1 cut(s) 719
Eco91I GGTNACC 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 719
EcoO65I GGTNACC 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 721
FaeI CATG 6 cut(s) 37, 172, 239, 313, 518, 667
FatI CATG 6 cut(s) 33, 168, 235, 309, 514, 663
FbaI TGATCA 1 cut(s) 666
Fnu4HI GCNGC 5 cut(s) 184, 332, 491, 588, 684
FokI GGATG 2 cut(s) 82, 518
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 5 cut(s) 184, 332, 491, 588, 684
FspBI CTAG 3 cut(s) 18, 72, 78
GlaI GCGC 2 cut(s) 14, 390
GluI GCNGC 5 cut(s) 184, 332, 491, 588, 684
GsuI CTGGAG 1 cut(s) 413
HaeIII GGCC 2 cut(s) 141, 690
HapII CCGG 2 cut(s) 64, 552
HgaI GACGC 1 cut(s) 418
HhaI GCGC 2 cut(s) 15, 391
Hin1II CATG 6 cut(s) 37, 172, 239, 313, 518, 667
Hin6I GCGC 2 cut(s) 13, 389
HinP1I GCGC 2 cut(s) 13, 389
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 3 cut(s) 384, 647, 653
HpaII CCGG 2 cut(s) 64, 552
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 6 cut(s) 100, 373, 383, 502, 574, 652
Hpy188III TCNNGA 3 cut(s) 135, 148, 674
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 571
HpyCH4V TGCA 6 cut(s) 186, 309, 340, 456, 523, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 279, 337
HpyF3I CTNAG 3 cut(s) 43, 651, 720
Hsp92II CATG 6 cut(s) 37, 172, 239, 313, 518, 667
HspAI GCGC 2 cut(s) 13, 389
Ksp22I TGATCA 1 cut(s) 666
Kzo9I GATC 5 cut(s) 60, 232, 315, 638, 666
LmnI GCTCC 1 cut(s) 680
Lsp1109I GCAGC 5 cut(s) 170, 318, 502, 599, 695
LweI GCATC 1 cut(s) 377
MaeI CTAG 3 cut(s) 18, 72, 78
MaeIII GTNAC 1 cut(s) 260
MalI GATC 5 cut(s) 62, 234, 317, 640, 668
MboI GATC 5 cut(s) 60, 232, 315, 638, 666
MboII GAAGA 4 cut(s) 111, 154, 308, 430
MhlI GDGCHC 1 cut(s) 721
MluCI AATT 4 cut(s) 88, 252, 599, 695
MlyI GAGTC 1 cut(s) 662
MmeI TCCRAC 1 cut(s) 616
MseI TTAA 1 cut(s) 602
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 2 cut(s) 590, 686
MspI CCGG 2 cut(s) 64, 552
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 3 cut(s) 10, 279, 337
NdeII GATC 5 cut(s) 60, 232, 315, 638, 666
NlaIII CATG 6 cut(s) 37, 172, 239, 313, 518, 667
NlaIV GGNNCC 1 cut(s) 550
NspI RCATGY 1 cut(s) 313
PaeI GCATGC 1 cut(s) 313
PceI AGGCCT 1 cut(s) 141
PfeI GAWTC 2 cut(s) 384, 647
PkrI GCNGC 5 cut(s) 185, 333, 492, 589, 685
PleI GAGTC 1 cut(s) 661
PpsI GAGTC 1 cut(s) 661
Psp124BI GAGCTC 1 cut(s) 721
Psp6I CCWGG 1 cut(s) 282
PspEI GGTNACC 1 cut(s) 260
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 550
PspPI GGNCC 1 cut(s) 689
PvuII CAGCTG 2 cut(s) 590, 686
RsaI GTAC 4 cut(s) 85, 250, 558, 662
RsaNI GTAC 4 cut(s) 84, 249, 557, 661
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 721
SaqAI TTAA 1 cut(s) 602
SatI GCNGC 5 cut(s) 184, 332, 491, 588, 684
Sau3AI GATC 5 cut(s) 60, 232, 315, 638, 666
Sau96I GGNCC 1 cut(s) 689
ScaI AGTACT 1 cut(s) 558
SchI GAGTC 1 cut(s) 662
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 1 cut(s) 721
SetI ASST 6 cut(s) 333, 513, 592, 623, 688, 721
SfaNI GCATC 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SpeI ACTAGT 1 cut(s) 77
SphI GCATGC 1 cut(s) 313
Sse9I AATT 4 cut(s) 88, 252, 599, 695
SseBI AGGCCT 1 cut(s) 141
SsiI CCGC 1 cut(s) 265
SspMI CTAG 3 cut(s) 18, 72, 78
SstI GAGCTC 1 cut(s) 721
StuI AGGCCT 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 282
TasI AATT 4 cut(s) 88, 252, 599, 695
TatI WGTACW 2 cut(s) 556, 660
TfiI GAWTC 2 cut(s) 384, 647
Tru1I TTAA 1 cut(s) 602
Tru9I TTAA 1 cut(s) 602
TseI GCWGC 5 cut(s) 183, 331, 490, 587, 683
TspDTI ATGAA 1 cut(s) 503
XceI RCATGY 1 cut(s) 313
XspI CTAG 3 cut(s) 18, 72, 78
ZrmI AGTACT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.