Rroxscaffold_7G00161220

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013549
Physical Location & Seq
Forward (+)
4021595 .. 4022314
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161220.1

Sequence Viewer

Length: 720 bp
ATGCCATCTGTGCGCTCTAGCCCATTCTATAACATGGAAAACTCAGCCCTCTTTTCTTTGATCCGGCATACTACTACCACCAATTCCACAACCGAAAAGCGTTCATCAAAGTCTTCATCATCATCATCCGGAGGCCTCCTCAAGATGTTCAAACTCTTTCCCATGTTGACATCAGGTTGCAAAATGGTGGCTCTGTTGGGCAGACCCCGAAAGCCTCTACTCAAAGACCATGCCACAACAGGTACAATTTTTGGTTATCGCAAAGGCAGAGTGAGCCTGGCAATACAAGAAGACCCTCATTGCATGCCAATCTTTGTAATAGAGCTGCCAATGCACAGCAATGTTTTCCACAAGGAAATGGCATCGGATATAGTCCGAATCGCGCTGGAGAGCGAGACCAAGACGCACAAGAAGAAGTTGTTAGAGGAGTTTGTTTGGGCTGTGTATTGTAATGGGAGAAAGGTTGGGTATTCGATTAGGAGGAAGCAAATGTCAGAGGATGAGCTTCATGTTATGCAAACTTTGAGAGGGGTTTCAATGGGTGCTGGAGTACTTCCAAGTCCATCGGAGAAGGAATATGCAGCAGATGGGGAACTGACATATATAAGGGCAAGGTTTGATAGGGTGGTTGGATCAAAGGATTCTGAGTCTCTGTACATGATAAATCCAGATGGTGCAGTTGGCCCAGAATTGAGTATTTTCTTTGTAAGAGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

239

Amino Acids

26.74

Weight (kDa)

9.49

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 80 - 237 8e-68 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42680 AT5G42680
fragaria_vesca FvH4_2g34960
malus_domestica MD08G1107300.v1.1 MD15G1087900.v1.1
prunus_persica Prupe.1G441600_v2.0.a1
pyrus_communis pycom08g08920 pycom15g08250
rosa_chinensis RchiOBHm_Chr6g0307041
rosa_laevigata RLG00000010741
rosa_multiflora Rmu_sc0005634.1_g000008
rosa_roxburghii Rroxscaffold_7G00161220
rosa_rugosa Rorug06G0355400
rosa_samantha Rh6AG466800 Rh6BG433600 Rh6CG482400 Rh6DG468600
rosa_wichuraiana Rw6G040690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 383
AccIII TCCGGA 1 cut(s) 128
AclWI GGATC 2 cut(s) 55, 640
AfaI GTAC 3 cut(s) 244, 552, 656
AgsI TTSAA 2 cut(s) 151, 537
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 3 cut(s) 325, 505, 713
AluI AGCT 3 cut(s) 325, 505, 713
Alw21I GWGCWC 1 cut(s) 715
Alw26I GTCTC 2 cut(s) 389, 654
AlwI GGATC 2 cut(s) 55, 640
Aor13HI TCCGGA 1 cut(s) 128
AoxI GGCC 2 cut(s) 133, 682
ApeKI GCWGC 2 cut(s) 325, 581
AspLEI GCGC 2 cut(s) 15, 385
AspS9I GGNCC 1 cut(s) 683
BanII GRGCYC 1 cut(s) 715
BbsI GAAGAC 2 cut(s) 105, 297
Bbv12I GWGCWC 1 cut(s) 715
BbvI GCAGC 2 cut(s) 312, 593
BccI CCATC 4 cut(s) 13, 571, 581, 665
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 2 cut(s) 389, 654
BfaI CTAG 1 cut(s) 18
BisI GCNGC 2 cut(s) 326, 582
BlsI GCNGC 2 cut(s) 327, 583
BmcAI AGTACT 1 cut(s) 552
Bme1390I CCNGG 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 683
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 371
BpiI GAAGAC 2 cut(s) 105, 297
BplI GAGNNNNNCTC 2 cut(s) 123, 155
BpmI CTGGAG 2 cut(s) 407, 567
BpuEI CTTGAG 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 389
BsaWI WCCGGW 1 cut(s) 128
Bse3DI GCAATG 2 cut(s) 298, 346
BseAI TCCGGA 1 cut(s) 128
BseBI CCWGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 125, 505
BseMI GCAATG 2 cut(s) 298, 346
BseMII CTCAG 2 cut(s) 57, 636
BseRI GAGGAG 2 cut(s) 128, 440
BseXI GCAGC 2 cut(s) 312, 593
BsgI GTGCAG 1 cut(s) 696
Bsh1236I CGCG 1 cut(s) 383
BshFI GGCC 2 cut(s) 135, 684
BsiHKAI GWGCWC 1 cut(s) 715
BsiSI CCGG 2 cut(s) 64, 129
BsmAI GTCTC 2 cut(s) 389, 654
BsnI GGCC 2 cut(s) 135, 684
Bso31I GGTCTC 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 715
Bsp13I TCCGGA 1 cut(s) 128
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 2 cut(s) 60, 632
BspANI GGCC 2 cut(s) 135, 684
BspCNI CTCAG 2 cut(s) 56, 637
BspEI TCCGGA 1 cut(s) 128
BspFNI CGCG 1 cut(s) 383
BspPI GGATC 2 cut(s) 55, 640
BspTNI GGTCTC 1 cut(s) 389
BsrDI GCAATG 2 cut(s) 298, 346
BsrGI TGTACA 1 cut(s) 654
BssMI GATC 2 cut(s) 60, 632
Bst2UI CCWGG 1 cut(s) 278
BstAUI TGTACA 1 cut(s) 654
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 43, 645
BstF5I GGATG 2 cut(s) 125, 505
BstFNI CGCG 1 cut(s) 383
BstHHI GCGC 2 cut(s) 15, 385
BstKTI GATC 2 cut(s) 63, 635
BstMAI GTCTC 2 cut(s) 389, 654
BstMBI GATC 2 cut(s) 60, 632
BstMWI GCNNNNNNNGC 3 cut(s) 10, 273, 331
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 307
BstSCI CCNGG 1 cut(s) 276
BstUI CGCG 1 cut(s) 383
BstV1I GCAGC 2 cut(s) 312, 593
BstV2I GAAGAC 2 cut(s) 105, 297
BsuRI GGCC 2 cut(s) 135, 684
BtsCI GGATG 2 cut(s) 125, 505
Cac8I GCNNGC 1 cut(s) 305
CfoI GCGC 2 cut(s) 15, 385
Cfr13I GGNCC 1 cut(s) 683
CseI GACGC 1 cut(s) 412
Csp6I GTAC 3 cut(s) 243, 551, 655
CviAII CATG 6 cut(s) 34, 163, 230, 304, 509, 658
CviQI GTAC 3 cut(s) 243, 551, 655
DdeI CTNAG 2 cut(s) 43, 645
DpnI GATC 2 cut(s) 62, 634
DpnII GATC 2 cut(s) 60, 632
Ecl136II GAGCTC 1 cut(s) 713
Eco147I AGGCCT 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 715
Eco31I GGTCTC 1 cut(s) 389
Eco53kI GAGCTC 1 cut(s) 713
EcoICRI GAGCTC 1 cut(s) 713
EcoRII CCWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 715
FaeI CATG 6 cut(s) 37, 166, 233, 307, 512, 661
FatI CATG 6 cut(s) 33, 162, 229, 303, 508, 657
Fnu4HI GCNGC 2 cut(s) 326, 582
FokI GGATG 2 cut(s) 112, 512
FriOI GRGCYC 1 cut(s) 715
Fsp4HI GCNGC 2 cut(s) 326, 582
FspBI CTAG 1 cut(s) 18
GlaI GCGC 2 cut(s) 14, 384
GluI GCNGC 2 cut(s) 326, 582
GsuI CTGGAG 2 cut(s) 407, 567
HaeIII GGCC 2 cut(s) 135, 684
HapII CCGG 2 cut(s) 64, 129
HgaI GACGC 1 cut(s) 412
HhaI GCGC 2 cut(s) 15, 385
Hin1II CATG 6 cut(s) 37, 166, 233, 307, 512, 661
Hin6I GCGC 2 cut(s) 13, 383
HinP1I GCGC 2 cut(s) 13, 383
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 3 cut(s) 378, 641, 647
HpaII CCGG 2 cut(s) 64, 129
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 5 cut(s) 367, 377, 496, 568, 646
Hpy188III TCNNGA 3 cut(s) 129, 142, 668
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 565
HpyCH4V TGCA 6 cut(s) 180, 303, 334, 517, 581, 677
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 273, 331
HpyF3I CTNAG 2 cut(s) 43, 645
Hsp92II CATG 6 cut(s) 37, 166, 233, 307, 512, 661
HspAI GCGC 2 cut(s) 13, 383
Kpn2I TCCGGA 1 cut(s) 128
Kzo9I GATC 2 cut(s) 60, 632
Lsp1109I GCAGC 2 cut(s) 312, 593
LweI GCATC 1 cut(s) 371
MaeI CTAG 1 cut(s) 18
MalI GATC 2 cut(s) 62, 634
MboI GATC 2 cut(s) 60, 632
MboII GAAGA 3 cut(s) 105, 302, 424
MhlI GDGCHC 1 cut(s) 715
MluCI AATT 3 cut(s) 82, 246, 689
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 1 cut(s) 610
MroI TCCGGA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 339
MspI CCGG 2 cut(s) 64, 129
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 1 cut(s) 383
MwoI GCNNNNNNNGC 3 cut(s) 10, 273, 331
NdeII GATC 2 cut(s) 60, 632
NlaIII CATG 6 cut(s) 37, 166, 233, 307, 512, 661
NspI RCATGY 1 cut(s) 307
PaeI GCATGC 1 cut(s) 307
PceI AGGCCT 1 cut(s) 135
PfeI GAWTC 2 cut(s) 378, 641
PkrI GCNGC 2 cut(s) 327, 583
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
Psp124BI GAGCTC 1 cut(s) 715
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspPI GGNCC 1 cut(s) 683
RsaI GTAC 3 cut(s) 244, 552, 656
RsaNI GTAC 3 cut(s) 243, 551, 655
RseI CAYNNNNRTG 1 cut(s) 339
SacI GAGCTC 1 cut(s) 715
SatI GCNGC 2 cut(s) 326, 582
Sau3AI GATC 2 cut(s) 60, 632
Sau96I GGNCC 1 cut(s) 683
ScaI AGTACT 1 cut(s) 552
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 1 cut(s) 715
SetI ASST 7 cut(s) 178, 244, 327, 465, 507, 617, 715
SfaNI GCATC 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SphI GCATGC 1 cut(s) 307
Sse9I AATT 3 cut(s) 82, 246, 689
SseBI AGGCCT 1 cut(s) 135
SspMI CTAG 1 cut(s) 18
SstI GAGCTC 1 cut(s) 715
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 276
TaqI TCGA 1 cut(s) 473
TasI AATT 3 cut(s) 82, 246, 689
TatI WGTACW 2 cut(s) 550, 654
TfiI GAWTC 2 cut(s) 378, 641
TseI GCWGC 2 cut(s) 325, 581
TspDTI ATGAA 3 cut(s) 93, 105, 497
XceI RCATGY 1 cut(s) 307
XspI CTAG 1 cut(s) 18
ZrmI AGTACT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.