Prupe.1G441600_v2.0.a1

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013549
Physical Location & Seq
Forward (+)
37493296 .. 37494669
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G441600.1

Sequence Viewer

Length: 702 bp
ATGCCGTCTGTGCACTCTAGCCCCTTCTACCACATGGAAAACTCTGCTATATTGAATTTTCTCCGGCATAGTCACACACCGGGCCAAAAACGTTCATCGAAGTCTTCATCCGGAGGCCTTCTCAAGATGTTCAAACTCTTCCCCATGTTGACATCAGGCTGCAAAATGGTGGCCTTGTTGGGAAGACCCCGAAAGCCTTTACTTAAGGACAATGCCACCACAGGTACAATTTTCGGGTATCGAAAAGGCAGGGTAAGCCTGGCCATACAAGAAGACCCTCATTGCATGCCACTCTTTGTGATAGAGCTGCCAATGCACAGTAGTGTGTTCCACAAGGAAATGGCATCGGATATAGTCCGAATCGCGCTGGAGAGCGAGACCAAGACGAACAAGAAGAAGCTGCTGGAGGAGTTCGTTTGGGCTGTGTATTGTAATGGAAGAAAGGTGGGGTATTCGATTCGGAGGAAGCAAATGTCAGAGGATGAGCTTCATGTTATGCAGACTTTGAGGGGTGTTTCAATGGGGGCAGGGGTGCTTCCAAGCCCGTCCGAAAAAGAATATGCATCGGATGGGGAACTGACCTACATAAGGGCAAGGTTTGAGAGGGTTGTTGGATCAAAGGACTCTGAGGCTTTGTACATGATCAATCCAGATGGGGCTGCAGGGCCAGAATTAAGCATTTTCATTGTAAGAGCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

234

Amino Acids

26.06

Weight (kDa)

9.49

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42680 AT5G42680
fragaria_vesca FvH4_2g34960
malus_domestica MD08G1107300.v1.1 MD15G1087900.v1.1
prunus_persica Prupe.1G441600_v2.0.a1
pyrus_communis pycom08g08920 pycom15g08250
rosa_chinensis RchiOBHm_Chr6g0307041
rosa_laevigata RLG00000010741
rosa_multiflora Rmu_sc0005634.1_g000008
rosa_roxburghii Rroxscaffold_7G00161220
rosa_rugosa Rorug06G0355400
rosa_samantha Rh6AG466800 Rh6BG433600 Rh6CG482400 Rh6DG468600
rosa_wichuraiana Rw6G040690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 365
AccIII TCCGGA 1 cut(s) 110
AclI AACGTT 1 cut(s) 91
AclWI GGATC 1 cut(s) 622
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 1 cut(s) 55
AfaI GTAC 2 cut(s) 226, 638
AfiI CCNNNNNNNGG 1 cut(s) 588
AflII CTTAAG 1 cut(s) 203
AgsI TTSAA 3 cut(s) 55, 133, 519
AjnI CCWGG 1 cut(s) 258
AleI CACNNNNGTG 1 cut(s) 321
AluBI AGCT 4 cut(s) 307, 400, 487, 695
AluI AGCT 4 cut(s) 307, 400, 487, 695
Alw21I GWGCWC 2 cut(s) 15, 697
Alw26I GTCTC 1 cut(s) 371
Alw44I GTGCAC 1 cut(s) 11
AlwI GGATC 1 cut(s) 622
Aor13HI TCCGGA 1 cut(s) 110
AoxI GGCC 5 cut(s) 82, 115, 171, 261, 665
ApaLI GTGCAC 1 cut(s) 11
ApeKI GCWGC 4 cut(s) 159, 307, 400, 659
ApoI RAATTY 1 cut(s) 55
AspLEI GCGC 1 cut(s) 367
AspS9I GGNCC 2 cut(s) 82, 665
AsuC2I CCSGG 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 15
BalI TGGCCA 1 cut(s) 263
BanII GRGCYC 1 cut(s) 697
BbsI GAAGAC 3 cut(s) 96, 190, 279
Bbv12I GWGCWC 2 cut(s) 15, 697
BbvI GCAGC 4 cut(s) 146, 294, 387, 646
BccI CCATC 2 cut(s) 563, 647
BciT130I CCWGG 1 cut(s) 260
BclI TGATCA 1 cut(s) 642
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 2 cut(s) 18, 700
BfmI CTRYAG 1 cut(s) 660
BfrI CTTAAG 1 cut(s) 203
BisI GCNGC 4 cut(s) 160, 308, 401, 660
BlsI GCNGC 4 cut(s) 161, 309, 402, 661
Bme1390I CCNGG 2 cut(s) 81, 260
BmgT120I GGNCC 2 cut(s) 82, 665
BmrFI CCNGG 2 cut(s) 81, 260
BmsI GCATC 2 cut(s) 353, 572
BpiI GAAGAC 3 cut(s) 96, 190, 279
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpmI CTGGAG 2 cut(s) 389, 425
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 588
Bse3DI GCAATG 1 cut(s) 280
BseAI TCCGGA 1 cut(s) 110
BseBI CCWGG 1 cut(s) 260
BseGI GGATG 3 cut(s) 107, 487, 574
BseLI CCNNNNNNNGG 1 cut(s) 588
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 618
BseRI GAGGAG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 15
BseXI GCAGC 4 cut(s) 146, 294, 387, 646
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 5 cut(s) 84, 117, 173, 263, 667
BsiHKAI GWGCWC 2 cut(s) 15, 697
BsiSI CCGG 3 cut(s) 64, 80, 111
BslI CCNNNNNNNGG 1 cut(s) 588
BsmAI GTCTC 1 cut(s) 371
BsnI GGCC 5 cut(s) 84, 117, 173, 263, 667
Bso31I GGTCTC 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 15, 697
Bsp13I TCCGGA 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 2 cut(s) 614, 642
BspANI GGCC 5 cut(s) 84, 117, 173, 263, 667
BspCNI CTCAG 1 cut(s) 619
BspEI TCCGGA 1 cut(s) 110
BspFNI CGCG 1 cut(s) 365
BspMAI CTGCAG 1 cut(s) 664
BspPI GGATC 1 cut(s) 622
BspTI CTTAAG 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 636
BssMI GATC 2 cut(s) 614, 642
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 143
BstAFI CTTAAG 1 cut(s) 203
BstAUI TGTACA 1 cut(s) 636
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 627
BstENI CCTNNNNNAGG 1 cut(s) 586
BstF5I GGATG 3 cut(s) 107, 487, 574
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 2 cut(s) 617, 645
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 2 cut(s) 614, 642
BstMWI GCNNNNNNNGC 3 cut(s) 10, 255, 313
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 2 cut(s) 79, 258
BstSFI CTRYAG 1 cut(s) 660
BstSLI GKGCMC 1 cut(s) 15
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 4 cut(s) 146, 294, 387, 646
BstV2I GAAGAC 3 cut(s) 96, 190, 279
BsuRI GGCC 5 cut(s) 84, 117, 173, 263, 667
BtsCI GGATG 3 cut(s) 107, 487, 574
Cac8I GCNNGC 1 cut(s) 287
CfoI GCGC 1 cut(s) 367
Cfr13I GGNCC 2 cut(s) 82, 665
Csp6I GTAC 2 cut(s) 225, 637
CviAII CATG 5 cut(s) 34, 145, 286, 491, 640
CviQI GTAC 2 cut(s) 225, 637
DdeI CTNAG 1 cut(s) 627
DpnI GATC 2 cut(s) 616, 644
DpnII GATC 2 cut(s) 614, 642
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 695
Eco147I AGGCCT 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 697
Eco31I GGTCTC 1 cut(s) 371
Eco53kI GAGCTC 1 cut(s) 695
EcoICRI GAGCTC 1 cut(s) 695
EcoNI CCTNNNNNAGG 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 565
EcoT38I GRGCYC 1 cut(s) 697
FaeI CATG 5 cut(s) 37, 148, 289, 494, 643
FatI CATG 5 cut(s) 33, 144, 285, 490, 639
FbaI TGATCA 1 cut(s) 642
Fnu4HI GCNGC 4 cut(s) 160, 308, 401, 660
FokI GGATG 3 cut(s) 94, 494, 581
FriOI GRGCYC 1 cut(s) 697
Fsp4HI GCNGC 4 cut(s) 160, 308, 401, 660
FspBI CTAG 2 cut(s) 18, 700
GlaI GCGC 1 cut(s) 366
GluI GCNGC 4 cut(s) 160, 308, 401, 660
GsuI CTGGAG 2 cut(s) 389, 425
HaeIII GGCC 5 cut(s) 84, 117, 173, 263, 667
HapII CCGG 3 cut(s) 64, 80, 111
HhaI GCGC 1 cut(s) 367
Hin1II CATG 5 cut(s) 37, 148, 289, 494, 643
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 3 cut(s) 360, 457, 623
HpaII CCGG 3 cut(s) 64, 80, 111
Hpy166II GTNNAC 2 cut(s) 13, 150
Hpy188I TCNGA 7 cut(s) 349, 359, 462, 478, 550, 568, 628
Hpy188III TCNNGA 3 cut(s) 111, 124, 650
Hpy8I GTNNAC 2 cut(s) 13, 150
HpyAV CCTTC 2 cut(s) 34, 128
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 7 cut(s) 13, 162, 285, 316, 499, 563, 662
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 255, 313
HpyF3I CTNAG 1 cut(s) 627
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 5 cut(s) 37, 148, 289, 494, 643
HspAI GCGC 1 cut(s) 365
Kpn2I TCCGGA 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 642
Kzo9I GATC 2 cut(s) 614, 642
Lsp1109I GCAGC 4 cut(s) 146, 294, 387, 646
LweI GCATC 2 cut(s) 353, 572
MaeI CTAG 2 cut(s) 18, 700
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 616, 644
MboI GATC 2 cut(s) 614, 642
MboII GAAGA 6 cut(s) 96, 130, 195, 284, 406, 450
MhlI GDGCHC 2 cut(s) 15, 697
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 3 cut(s) 55, 228, 671
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 1 cut(s) 617
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 8 cut(s) 107, 288, 400, 456, 472, 501, 597, 622
Mox20I TGGCCA 1 cut(s) 263
Mph1103I ATGCAT 1 cut(s) 565
MroI TCCGGA 1 cut(s) 110
MscI TGGCCA 1 cut(s) 263
MseI TTAA 2 cut(s) 204, 674
MslI CAYNNNNRTG 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 263
MspCI CTTAAG 1 cut(s) 203
MspI CCGG 3 cut(s) 64, 80, 111
MspR9I CCNGG 2 cut(s) 81, 260
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 3 cut(s) 10, 255, 313
NciI CCSGG 1 cut(s) 81
NdeII GATC 2 cut(s) 614, 642
NlaIII CATG 5 cut(s) 37, 148, 289, 494, 643
NmuCI GTSAC 1 cut(s) 71
NsiI ATGCAT 1 cut(s) 565
NspI RCATGY 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 321
PaeI GCATGC 1 cut(s) 289
PceI AGGCCT 1 cut(s) 117
PfeI GAWTC 2 cut(s) 360, 457
PkrI GCNGC 4 cut(s) 161, 309, 402, 661
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
Psp124BI GAGCTC 1 cut(s) 697
Psp1406I AACGTT 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspPI GGNCC 2 cut(s) 82, 665
PstI CTGCAG 1 cut(s) 664
RsaI GTAC 2 cut(s) 226, 638
RsaNI GTAC 2 cut(s) 225, 637
RseI CAYNNNNRTG 1 cut(s) 321
SacI GAGCTC 1 cut(s) 697
SaqAI TTAA 2 cut(s) 204, 674
SatI GCNGC 4 cut(s) 160, 308, 401, 660
Sau3AI GATC 2 cut(s) 614, 642
Sau96I GGNCC 2 cut(s) 82, 665
SchI GAGTC 1 cut(s) 617
ScrFI CCNGG 2 cut(s) 81, 260
SduI GDGCHC 2 cut(s) 15, 697
SetI ASST 9 cut(s) 94, 226, 309, 402, 447, 489, 584, 599, 697
SfaNI GCATC 2 cut(s) 353, 572
SfcI CTRYAG 1 cut(s) 660
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 122, 203
SmoI CTYRAG 2 cut(s) 122, 203
SphI GCATGC 1 cut(s) 289
Sse9I AATT 3 cut(s) 55, 228, 671
SseBI AGGCCT 1 cut(s) 117
SspMI CTAG 2 cut(s) 18, 700
SstI GAGCTC 1 cut(s) 697
StuI AGGCCT 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 79, 258
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 94
TaqI TCGA 3 cut(s) 98, 241, 455
TasI AATT 3 cut(s) 55, 228, 671
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 2 cut(s) 360, 457
Tru1I TTAA 2 cut(s) 204, 674
Tru9I TTAA 2 cut(s) 204, 674
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 4 cut(s) 159, 307, 400, 659
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 4 cut(s) 84, 96, 479, 673
Vha464I CTTAAG 1 cut(s) 203
VneI GTGCAC 1 cut(s) 11
XagI CCTNNNNNAGG 1 cut(s) 586
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 289
XspI CTAG 2 cut(s) 18, 700
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.