pycom08g08920

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013549
Physical Location & Seq
Forward (+)
7209337 .. 7210041
705 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g08920.1

Sequence Viewer

Length: 705 bp
ATGCCTTCTGTGCACTCTAGCCCCTTCTACCACTTAGAGAACTCAGCCATATTTAACCTAATCCGGCACGGTCATACGCCGGGCCAAAAACGTTCGTCGAAATCTTCATCCGGAGGTCTTCTCAAGATGTTCAAGCTCTTCCCCATGTTGACGTCAGGCTGCAAAATGGTTGCTTTGCTAGGCAGACCCCGAAAGCCGTTACTAAAGGATCATGCCACAACAGGTACAATTTTCGGGTATCGAAAAGGGAGGGTGAGCCTAGCAATACAAGAAGACCCTCATTGCATGCCACTCTTTGTGCTCGAGCTGCCAATGCACAGTAGTGTATTTCATAAAGAAATGGCGTCAGATATAGTCCGAATCGCACTGGAGAGCGAGACGAAGACGCACAAGAAGAAGCTGACGGAGGAGTTTGTGTGGGCTGTGTATTGCAATGGAAGAAAGGTAGGGTATTCTATTAGGAGGAAGCAAATGTCGGAGGACGAGCTTCATGTTATGCAAACTTTGAGGGGTGTTTCGATGGGGGCAGGGGTTCTTCCATGCCCTTCTGATCAGAAGGAGTACGCAGGAGATGGGGAATTGACTTACATAAGGGCAAGGTTTGAGAGGGTGGATCGATCAAAGGACTCTGAAGCTTTGTACATGATTAATCCCGATGGAGCGGCAGGGCCAGAATTAAGTATTTTCTTTGTAAGAGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

235

Amino Acids

26.3

Weight (kDa)

9.43

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 74 - 232 7.5e-66 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013549)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42680 AT5G42680
fragaria_vesca FvH4_2g34960
malus_domestica MD08G1107300.v1.1 MD15G1087900.v1.1
prunus_persica Prupe.1G441600_v2.0.a1
pyrus_communis pycom08g08920 pycom15g08250
rosa_chinensis RchiOBHm_Chr6g0307041
rosa_laevigata RLG00000010741
rosa_multiflora Rmu_sc0005634.1_g000008
rosa_roxburghii Rroxscaffold_7G00161220
rosa_rugosa Rorug06G0355400
rosa_samantha Rh6AG466800 Rh6BG433600 Rh6CG482400 Rh6DG468600
rosa_wichuraiana Rw6G040690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 155
AccBSI CCGCTC 1 cut(s) 662
AccIII TCCGGA 1 cut(s) 110
AciI CCGC 1 cut(s) 662
AclI AACGTT 1 cut(s) 91
AclWI GGATC 2 cut(s) 216, 621
AcuI CTGAAG 1 cut(s) 651
AcyI GRCGYC 2 cut(s) 152, 344
AfaI GTAC 3 cut(s) 226, 563, 641
AgsI TTSAA 1 cut(s) 133
AleI CACNNNNGTG 1 cut(s) 321
AluBI AGCT 6 cut(s) 136, 307, 400, 487, 635, 698
AluI AGCT 6 cut(s) 136, 307, 400, 487, 635, 698
Alw21I GWGCWC 3 cut(s) 15, 303, 700
Alw26I GTCTC 1 cut(s) 371
Alw44I GTGCAC 1 cut(s) 11
AlwI GGATC 2 cut(s) 216, 621
Ama87I CYCGRG 1 cut(s) 302
Aor13HI TCCGGA 1 cut(s) 110
AoxI GGCC 2 cut(s) 82, 668
ApaLI GTGCAC 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 159, 307
AseI ATTAAT 1 cut(s) 648
AspS9I GGNCC 2 cut(s) 82, 668
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 265
AvaI CYCGRG 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 15
BanII GRGCYC 1 cut(s) 700
BbsI GAAGAC 3 cut(s) 110, 279, 389
Bbv12I GWGCWC 3 cut(s) 15, 303, 700
BbvI GCAGC 2 cut(s) 146, 294
BccI CCATC 3 cut(s) 514, 566, 650
BceAI ACGGC 1 cut(s) 181
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 3 cut(s) 18, 179, 260
BisI GCNGC 3 cut(s) 160, 308, 663
BlsI GCNGC 3 cut(s) 161, 309, 664
Bme1390I CCNGG 1 cut(s) 81
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 82, 668
BmrFI CCNGG 1 cut(s) 81
BpiI GAAGAC 3 cut(s) 110, 279, 389
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpmI CTGGAG 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 81
Bsa29I ATCGAT 1 cut(s) 616
BsaHI GRCGYC 2 cut(s) 152, 344
BsaWI WCCGGW 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bse1I ACTGG 1 cut(s) 372
Bse3DI GCAATG 2 cut(s) 280, 439
BseAI TCCGGA 1 cut(s) 110
BseCI ATCGAT 1 cut(s) 616
BseGI GGATG 1 cut(s) 107
BseMI GCAATG 2 cut(s) 280, 439
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 422
BseSI GKGCMC 1 cut(s) 15
BseXI GCAGC 2 cut(s) 146, 294
BshFI GGCC 2 cut(s) 84, 670
BshVI ATCGAT 1 cut(s) 616
BsiHKAI GWGCWC 3 cut(s) 15, 303, 700
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 3 cut(s) 64, 80, 111
BsmAI GTCTC 1 cut(s) 371
BsmBI CGTCTC 1 cut(s) 371
BsnI GGCC 2 cut(s) 84, 670
BsoBI CYCGRG 1 cut(s) 302
Bsp1286I GDGCHC 3 cut(s) 15, 303, 700
Bsp13I TCCGGA 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 639
Bsp143I GATC 4 cut(s) 208, 550, 613, 617
BspACI CCGC 1 cut(s) 662
BspANI GGCC 2 cut(s) 84, 670
BspCNI CTCAG 1 cut(s) 56
BspDI ATCGAT 1 cut(s) 616
BspEI TCCGGA 1 cut(s) 110
BspPI GGATC 2 cut(s) 216, 621
BspQI GCTCTTC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 662
BsrDI GCAATG 2 cut(s) 280, 439
BsrGI TGTACA 1 cut(s) 639
BsrI ACTGG 1 cut(s) 372
BssMI GATC 4 cut(s) 208, 550, 613, 617
BssNI GRCGYC 2 cut(s) 152, 344
Bst4CI ACNGT 2 cut(s) 71, 320
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 2 cut(s) 152, 344
BstAUI TGTACA 1 cut(s) 639
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 34, 43
BstF5I GGATG 1 cut(s) 107
BstKTI GATC 4 cut(s) 211, 553, 616, 620
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 4 cut(s) 208, 550, 613, 617
BstMWI GCNNNNNNNGC 3 cut(s) 10, 307, 313
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 15
BstV1I GCAGC 2 cut(s) 146, 294
BstV2I GAAGAC 3 cut(s) 110, 279, 389
Bsu15I ATCGAT 1 cut(s) 616
BsuRI GGCC 2 cut(s) 84, 670
BsuTUI ATCGAT 1 cut(s) 616
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 287
Cfr13I GGNCC 2 cut(s) 82, 668
ClaI ATCGAT 1 cut(s) 616
CseI GACGC 2 cut(s) 333, 394
Csp6I GTAC 3 cut(s) 225, 562, 640
CviAII CATG 6 cut(s) 145, 212, 286, 491, 540, 643
CviQI GTAC 3 cut(s) 225, 562, 640
DdeI CTNAG 2 cut(s) 34, 43
DpnI GATC 4 cut(s) 210, 552, 615, 619
DpnII GATC 4 cut(s) 208, 550, 613, 617
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 698
Eco24I GRGCYC 1 cut(s) 700
Eco53kI GAGCTC 1 cut(s) 698
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 698
EcoT38I GRGCYC 1 cut(s) 700
Esp3I CGTCTC 1 cut(s) 371
FaeI CATG 6 cut(s) 148, 215, 289, 494, 543, 646
FatI CATG 6 cut(s) 144, 211, 285, 490, 539, 642
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 3 cut(s) 160, 308, 663
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 700
Fsp4HI GCNGC 3 cut(s) 160, 308, 663
FspBI CTAG 3 cut(s) 18, 179, 260
GluI GCNGC 3 cut(s) 160, 308, 663
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 2 cut(s) 84, 670
HapII CCGG 3 cut(s) 64, 80, 111
HgaI GACGC 2 cut(s) 333, 394
Hin1I GRCGYC 2 cut(s) 152, 344
Hin1II CATG 6 cut(s) 148, 215, 289, 494, 543, 646
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 633
HinfI GANTC 2 cut(s) 360, 626
HpaII CCGG 3 cut(s) 64, 80, 111
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 2 cut(s) 13, 150
Hpy188I TCNGA 6 cut(s) 349, 359, 478, 550, 555, 631
Hpy188III TCNNGA 3 cut(s) 111, 124, 653
Hpy8I GTNNAC 2 cut(s) 13, 150
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 4 cut(s) 15, 34, 550, 555
HpyCH4III ACNGT 2 cut(s) 71, 320
HpyCH4IV ACGT 2 cut(s) 91, 152
HpyCH4V TGCA 6 cut(s) 13, 162, 285, 316, 432, 499
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 307, 313
HpyF3I CTNAG 2 cut(s) 34, 43
HpySE526I ACGT 2 cut(s) 91, 152
Hsp92I GRCGYC 2 cut(s) 152, 344
Hsp92II CATG 6 cut(s) 148, 215, 289, 494, 543, 646
Kpn2I TCCGGA 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 4 cut(s) 208, 550, 613, 617
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 659
Lsp1109I GCAGC 2 cut(s) 146, 294
MaeI CTAG 3 cut(s) 18, 179, 260
MaeII ACGT 2 cut(s) 91, 152
MaeIII GTNAC 1 cut(s) 198
MalI GATC 4 cut(s) 210, 552, 615, 619
MbiI CCGCTC 1 cut(s) 662
MboI GATC 4 cut(s) 208, 550, 613, 617
MboII GAAGA 8 cut(s) 96, 110, 130, 284, 394, 406, 450, 527
MhlI GDGCHC 3 cut(s) 15, 303, 700
MluCI AATT 3 cut(s) 228, 578, 674
MlyI GAGTC 1 cut(s) 620
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 8 cut(s) 107, 243, 288, 400, 456, 472, 501, 600
MroI TCCGGA 1 cut(s) 110
MseI TTAA 3 cut(s) 54, 648, 677
MslI CAYNNNNRTG 1 cut(s) 321
MspI CCGG 3 cut(s) 64, 80, 111
MspR9I CCNGG 1 cut(s) 81
MwoI GCNNNNNNNGC 3 cut(s) 10, 307, 313
NciI CCSGG 1 cut(s) 81
NdeII GATC 4 cut(s) 208, 550, 613, 617
NlaIII CATG 6 cut(s) 148, 215, 289, 494, 543, 646
NspI RCATGY 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 321
PaeI GCATGC 1 cut(s) 289
PaeR7I CTCGAG 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 360
PkrI GCNGC 3 cut(s) 161, 309, 664
PleI GAGTC 1 cut(s) 620
PpsI GAGTC 1 cut(s) 620
PshBI ATTAAT 1 cut(s) 648
Psp124BI GAGCTC 1 cut(s) 700
Psp1406I AACGTT 1 cut(s) 91
PspPI GGNCC 2 cut(s) 82, 668
PspXI VCTCGAGB 1 cut(s) 302
RsaI GTAC 3 cut(s) 226, 563, 641
RsaNI GTAC 3 cut(s) 225, 562, 640
RseI CAYNNNNRTG 1 cut(s) 321
SacI GAGCTC 1 cut(s) 700
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 54, 648, 677
SatI GCNGC 3 cut(s) 160, 308, 663
Sau3AI GATC 4 cut(s) 208, 550, 613, 617
Sau96I GGNCC 2 cut(s) 82, 668
SchI GAGTC 1 cut(s) 620
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 3 cut(s) 15, 303, 700
Sfr274I CTCGAG 1 cut(s) 302
SlaI CTCGAG 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 122, 302
SmoI CTYRAG 2 cut(s) 122, 302
SphI GCATGC 1 cut(s) 289
Sse9I AATT 3 cut(s) 228, 578, 674
SsiI CCGC 1 cut(s) 662
SspMI CTAG 3 cut(s) 18, 179, 260
SstI GAGCTC 1 cut(s) 700
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 2 cut(s) 71, 320
TaiI ACGT 2 cut(s) 94, 155
TaqI TCGA 5 cut(s) 98, 241, 303, 518, 616
TasI AATT 3 cut(s) 228, 578, 674
TatI WGTACW 1 cut(s) 639
TauI GCSGC 1 cut(s) 665
TfiI GAWTC 1 cut(s) 360
Tru1I TTAA 3 cut(s) 54, 648, 677
Tru9I TTAA 3 cut(s) 54, 648, 677
TscAI CASTG 1 cut(s) 372
TseI GCWGC 2 cut(s) 159, 307
TspDTI ATGAA 3 cut(s) 96, 320, 479
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 372
VneI GTGCAC 1 cut(s) 11
VspI ATTAAT 1 cut(s) 648
XceI RCATGY 1 cut(s) 289
XhoI CTCGAG 1 cut(s) 302
XspI CTAG 3 cut(s) 18, 179, 260
ZraI GACGTC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.