Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011197

Physical Location & Seq

Genomic Coordinates Reverse (-)

17579867 .. 17581275

Gene Structure 1409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAACGGTCACGATTCTCTCACCCAAATCGATTCCAAAGGTCACTGATTCCAAATTCGGAGCTAGGGTTTCTGATCAGATCGTCAATGTCGTAAAATGCGGCAAATCCGGCCGGAGATTGAAGTTAGCGAAGCTGGTCTCAGCGGCTGGATTGTCACAGATCGAACCAGACATCAACGAAGACCCGATTGGTCAATTCGAGACTAATAGCATTGAAATGGAAGATTTCAAGTATGGATATTACGATGGAGCTCATACTTACTATGAAGGAGAAGTTCAAAAGGGAACATTTTGGGGAGCAATTGCTGATGACATTGCTGCTGTGGATCAAACTAATGGGTTTCAAGGTTTGATCTCTTGTATGTTTCTTCCTGCTATAGCTCTTGGGATGTATTTTGATGCTCCGGGTGAGTACTTGTTCATAGGTGCAGCGTTATTCACGGTAGTGTTCTGTATAATAGAGATGGATAAACCTGACCAGCCACACAACTTCGAGCCTCAGATATACAAATTGGAGAGAGGAGCTCGTGACAAGCTCATTAATGACTACAACACAATGAGCATTTGGGACTTTAATGACAAATATGGTGATGTATGGGATTTCACCATTGAGAAAGATGATATCGCCACACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.75

Weight (kDa)

4.56

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43750
fragaria_vesca	FvH4_4g02220 FvH4_4g02220
malus_domestica	MD11G1069500.v1.1
prunus_persica	Prupe.1G026900_v2.0.a1
pyrus_communis	pycom11g05790
rosa_chinensis	RchiOBHm_Chr4g0389531
rosa_laevigata	RLG00000009976
rosa_multiflora	Rmu_sc0002498.1_g000005 Rmu_sc0016342.1_g000010
rosa_roxburghii	Rroxscaffold_5G00335490
rosa_rugosa	Rorug03G0323700 Rorug03G0323700
rosa_samantha	Rh4AG028100 Rh4BG021200 Rh4CG030000 Rh4DG021800
rosa_wichuraiana	Rw0G017320 Rw4G002040 Rw4G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	102, 146
AclWI	GGATC	1 cut(s)	336
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	56
AfaI	GTAC	1 cut(s)	416
AgsI	TTSAA	5 cut(s)	124, 218, 232, 281, 347
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	6 cut(s)	65, 136, 254, 383, 527, 538
AluI	AGCT	6 cut(s)	65, 136, 254, 383, 527, 538
Alw21I	GWGCWC	2 cut(s)	256, 529
Alw26I	GTCTC	2 cut(s)	145, 197
AlwI	GGATC	1 cut(s)	336
AlwNI	CAGNNNCTG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	320, 431
ApoI	RAATTY	1 cut(s)	56
AseI	ATTAAT	1 cut(s)	543
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	4 cut(s)	15, 422, 598, 602
BanII	GRGCYC	2 cut(s)	256, 529
BauI	CACGAG	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	256, 529
BbvI	GCAGC	2 cut(s)	307, 443
BccI	CCATC	2 cut(s)	242, 460
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	408
BcoDI	GTCTC	2 cut(s)	145, 197
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	378
BisI	GCNGC	4 cut(s)	103, 147, 321, 432
BlsI	GCNGC	4 cut(s)	104, 148, 322, 433
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	189
BplI	GAGNNNNNCTC	2 cut(s)	511, 543
BpuMI	CCSGG	1 cut(s)	408
Bsa29I	ATCGAT	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bse3DI	GCAATG	1 cut(s)	315
BseCI	ATCGAT	1 cut(s)	32
BseGI	GGATG	1 cut(s)	396
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	156, 515
BseRI	GAGGAG	1 cut(s)	537
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	307, 443
BsgI	GTGCAG	1 cut(s)	450
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	1 cut(s)	114
BshVI	ATCGAT	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	256, 529
BsiSI	CCGG	3 cut(s)	111, 115, 407
BslFI	GGGAC	1 cut(s)	584
BsmAI	GTCTC	2 cut(s)	145, 197
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	114
Bso31I	GGTCTC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	256, 529
Bsp143I	GATC	5 cut(s)	76, 81, 162, 328, 354
BspACI	CCGC	2 cut(s)	102, 146
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	2 cut(s)	155, 514
BspDI	ATCGAT	1 cut(s)	32
BspPI	GGATC	1 cut(s)	336
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	315
BssMI	GATC	5 cut(s)	76, 81, 162, 328, 354
BssSI	CACGAG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	10, 445
BstDEI	CTNAG	2 cut(s)	142, 501
BstF5I	GGATG	1 cut(s)	396
BstKTI	GATC	5 cut(s)	79, 84, 165, 331, 357
BstMAI	GTCTC	2 cut(s)	145, 197
BstMBI	GATC	5 cut(s)	76, 81, 162, 328, 354
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	307, 443
BstV2I	GAAGAC	1 cut(s)	189
BstZI	CGGCCG	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	149
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	415
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	2 cut(s)	142, 501
DpnI	GATC	5 cut(s)	78, 83, 164, 330, 356
DpnII	GATC	5 cut(s)	76, 81, 162, 328, 354
EaeI	YGGCCR	1 cut(s)	112
EagI	CGGCCG	1 cut(s)	112
Ecl136II	GAGCTC	2 cut(s)	254, 527
EclXI	CGGCCG	1 cut(s)	112
Eco24I	GRGCYC	2 cut(s)	256, 529
Eco31I	GGTCTC	1 cut(s)	145
Eco32I	GATATC	1 cut(s)	625
Eco52I	CGGCCG	1 cut(s)	112
Eco53kI	GAGCTC	2 cut(s)	254, 527
EcoICRI	GAGCTC	2 cut(s)	254, 527
EcoRV	GATATC	1 cut(s)	625
EcoT38I	GRGCYC	2 cut(s)	256, 529
FaqI	GGGAC	1 cut(s)	584
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	4 cut(s)	103, 147, 321, 432
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	2 cut(s)	256, 529
Fsp4HI	GCNGC	4 cut(s)	103, 147, 321, 432
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	4 cut(s)	103, 147, 321, 432
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	3 cut(s)	111, 115, 407
HinfI	GANTC	3 cut(s)	16, 34, 50
HpaII	CCGG	3 cut(s)	111, 115, 407
HphI	GGTGA	4 cut(s)	15, 422, 598, 602
Hpy188I	TCNGA	4 cut(s)	62, 76, 81, 504
Hpy188III	TCNNGA	3 cut(s)	13, 202, 530
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	10, 445
HpyCH4V	TGCA	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	2 cut(s)	142, 501
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	5 cut(s)	76, 81, 162, 328, 354
LmnI	GCTCC	5 cut(s)	62, 251, 299, 409, 524
LpnPI	CCDG	9 cut(s)	122, 124, 128, 135, 183, 387, 420, 489, 494
Lsp1109I	GCAGC	2 cut(s)	307, 443
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	4 cut(s)	10, 43, 156, 530
MalI	GATC	5 cut(s)	78, 83, 164, 330, 356
MboI	GATC	5 cut(s)	76, 81, 162, 328, 354
MboII	GAAGA	3 cut(s)	194, 236, 362
MfeI	CAATTG	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	256, 529
MluCI	AATT	4 cut(s)	56, 197, 303, 512
MnlI	CCTC	2 cut(s)	510, 515
MseI	TTAA	2 cut(s)	543, 576
MslI	CAYNNNNRTG	2 cut(s)	218, 446
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	3 cut(s)	111, 115, 407
MspR9I	CCNGG	1 cut(s)	408
MunI	CAATTG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	408
NdeII	GATC	5 cut(s)	76, 81, 162, 328, 354
NmuCI	GTSAC	4 cut(s)	10, 43, 156, 530
OliI	CACNNNNGTG	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	16, 34, 50
PkrI	GCNGC	4 cut(s)	104, 148, 322, 433
PshBI	ATTAAT	1 cut(s)	543
Psp124BI	GAGCTC	2 cut(s)	256, 529
PstNI	CAGNNNCTG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	2 cut(s)	218, 446
SacI	GAGCTC	2 cut(s)	256, 529
SaqAI	TTAA	2 cut(s)	543, 576
SatI	GCNGC	4 cut(s)	103, 147, 321, 432
Sau3AI	GATC	5 cut(s)	76, 81, 162, 328, 354
ScaI	AGTACT	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	2 cut(s)	256, 529
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	1 cut(s)	378
SmiMI	CAYNNNNRTG	2 cut(s)	218, 446
Sse9I	AATT	4 cut(s)	56, 197, 303, 512
SsiI	CCGC	2 cut(s)	102, 146
SspMI	CTAG	1 cut(s)	66
SstI	GAGCTC	2 cut(s)	256, 529
StyD4I	CCNGG	1 cut(s)	406
TaaI	ACNGT	2 cut(s)	10, 445
TaqI	TCGA	4 cut(s)	32, 165, 201, 495
TasI	AATT	4 cut(s)	56, 197, 303, 512
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	2 cut(s)	105, 149
TfiI	GAWTC	3 cut(s)	16, 34, 50
Tru1I	TTAA	2 cut(s)	543, 576
Tru9I	TTAA	2 cut(s)	543, 576
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	4 cut(s)	10, 43, 156, 530
TseI	GCWGC	2 cut(s)	320, 431
Tsp45I	GTSAC	4 cut(s)	10, 43, 156, 530
TspDTI	ATGAA	2 cut(s)	282, 412
TspRI	CASTG	1 cut(s)	52
VspI	ATTAAT	1 cut(s)	543
XapI	RAATTY	1 cut(s)	56
XspI	CTAG	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.