Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00773

Orthogroup ID

OG0011197

Physical Location & Seq

Genomic Coordinates Forward (+)

17282 .. 21222

Gene Structure 3941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G017320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCAGTCTGCTCCTCTCCACTCGCAGTTGTCTCTCCCAACCCAGCACCACTCCCCAGACTCAGCTCTAAGCTATCGCAAACTAGGCTTAACGTTTCCTCGGGTCACATTCACAGCCCCTCCAAATCATCATTGCTCCTAAACTTGCCTAAGAGAAGTTTCACACGGTTGAACGCTGCTGGGTTCGCAGAGATCGAGCCTGACCTCAATGAAGACCCCACTAACCGTTGGGAAACTAACAGTATCTCTGCGGAGGATTTTAAGTATGGAGACTATGATGACCACCATACTTACCATGAAGGAGAGGAGACAGGAACCTTCTGGGGATCAATAGCAGAAGATGTTGAAGCAGTAGGACCCCCTACAGGTTTTCAGGGTTTAATATCATGGCTTTTCCCCCCTGCAGTTGCTGCCGCAATGTATTTTCATGCCCCGGGGGAGTACTTGTTCATTGGAGCGGGTCTATTTACGATTGTATTTTGTATTATTGAGATGGATAAGCCAGATCAACCCCACAACTTTGAGCCTCAGATATACAATATGGAGAGGGGATCTCGTGACAAGTTGATAGCTGATTACAATACCATGGATATCTGGGATTTCAATGAGAAATATGGGGACCTATGGGATTTCACTGTGAAGGCGAAGGATGATATAACAAAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

24.91

Weight (kDa)

4.79

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43750
fragaria_vesca	FvH4_4g02220 FvH4_4g02220
malus_domestica	MD11G1069500.v1.1
prunus_persica	Prupe.1G026900_v2.0.a1
pyrus_communis	pycom11g05790
rosa_chinensis	RchiOBHm_Chr4g0389531
rosa_laevigata	RLG00000009976
rosa_multiflora	Rmu_sc0002498.1_g000005 Rmu_sc0016342.1_g000010
rosa_roxburghii	Rroxscaffold_5G00335490
rosa_rugosa	Rorug03G0323700 Rorug03G0323700
rosa_samantha	Rh4AG028100 Rh4BG021200 Rh4CG030000 Rh4DG021800
rosa_wichuraiana	Rw0G017320 Rw4G002040 Rw4G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	458
AciI	CCGC	3 cut(s)	251, 414, 458
AclI	AACGTT	1 cut(s)	93
AclWI	GGATC	2 cut(s)	334, 559
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	3 cut(s)	172, 347, 604
AloI	GAACNNNNNNTCC	2 cut(s)	431, 463
AluBI	AGCT	3 cut(s)	66, 73, 572
AluI	AGCT	3 cut(s)	66, 73, 572
Alw26I	GTCTC	3 cut(s)	37, 264, 302
AlwI	GGATC	2 cut(s)	334, 559
AlwNI	CAGNNNCTG	1 cut(s)	410
Ama87I	CYCGRG	2 cut(s)	100, 433
ApeKI	GCWGC	2 cut(s)	176, 410
AspS9I	GGNCC	2 cut(s)	356, 619
AsuC2I	CCSGG	2 cut(s)	434, 435
AvaI	CYCGRG	2 cut(s)	100, 433
AvaII	GGWCC	2 cut(s)	356, 619
BauI	CACGAG	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	163, 397
BccI	CCATC	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	434, 435
BcoDI	GTCTC	3 cut(s)	37, 264, 302
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	2 cut(s)	363, 402
BisI	GCNGC	3 cut(s)	177, 411, 414
BlsI	GCNGC	3 cut(s)	178, 412, 415
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	2 cut(s)	434, 435
Bme18I	GGWCC	2 cut(s)	356, 619
BmeT110I	CYCGRG	2 cut(s)	100, 433
BmgT120I	GGNCC	2 cut(s)	356, 619
BmiI	GGNNCC	3 cut(s)	316, 358, 620
BmrFI	CCNGG	2 cut(s)	434, 435
BpiI	GAAGAC	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	538, 570
BpuMI	CCSGG	2 cut(s)	434, 435
BsaJI	CCNNGG	5 cut(s)	99, 432, 433, 434, 585
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 431, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse3DI	GCAATG	2 cut(s)	131, 423
BseDI	CCNNGG	5 cut(s)	99, 432, 433, 434, 585
BseGI	GGATG	1 cut(s)	655
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMI	GCAATG	2 cut(s)	131, 423
BseMII	CTCAG	2 cut(s)	76, 542
BseRI	GAGGAG	2 cut(s)	4, 320
BseXI	GCAGC	2 cut(s)	163, 397
BseYI	CCCAGC	2 cut(s)	43, 179
BsiHKCI	CYCGRG	2 cut(s)	100, 433
BsiSI	CCGG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	3 cut(s)	37, 264, 302
BsmFI	GGGAC	1 cut(s)	632
BsoBI	CYCGRG	2 cut(s)	100, 433
Bsp143I	GATC	4 cut(s)	192, 326, 505, 551
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	3 cut(s)	251, 414, 458
BspCNI	CTCAG	2 cut(s)	75, 541
BspLI	GGNNCC	3 cut(s)	316, 358, 620
BspMAI	CTGCAG	1 cut(s)	406
BspPI	GGATC	2 cut(s)	334, 559
BsrBI	CCGCTC	1 cut(s)	458
BsrDI	GCAATG	2 cut(s)	131, 423
BssECI	CCNNGG	5 cut(s)	99, 432, 433, 434, 585
BssMI	GATC	4 cut(s)	192, 326, 505, 551
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	585
Bst2BI	CACGAG	1 cut(s)	555
Bst4CI	ACNGT	4 cut(s)	168, 227, 242, 637
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstDEI	CTNAG	4 cut(s)	62, 69, 150, 528
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	655
BstKTI	GATC	4 cut(s)	195, 329, 508, 554
BstMAI	GTCTC	3 cut(s)	37, 264, 302
BstMBI	GATC	4 cut(s)	192, 326, 505, 551
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 185, 410
BstSCI	CCNGG	2 cut(s)	432, 433
BstSFI	CTRYAG	2 cut(s)	363, 402
BstV1I	GCAGC	2 cut(s)	163, 397
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	655
BtsIMutI	CAGTG	1 cut(s)	633
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	356, 619
Cfr9I	CCCGGG	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	4 cut(s)	296, 387, 428, 586
CviJI	RGCY	9 cut(s)	66, 73, 88, 117, 199, 391, 502, 526, 572
CviKI_1	RGCY	9 cut(s)	66, 73, 88, 117, 199, 391, 502, 526, 572
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	4 cut(s)	62, 69, 150, 528
DpnI	GATC	4 cut(s)	194, 328, 507, 553
DpnII	GATC	4 cut(s)	192, 326, 505, 551
Eco130I	CCWWGG	1 cut(s)	585
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	2 cut(s)	356, 619
Eco88I	CYCGRG	2 cut(s)	100, 433
EcoO109I	RGGNCCY	2 cut(s)	356, 619
EcoRV	GATATC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	4 cut(s)	299, 390, 431, 589
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	4 cut(s)	295, 386, 427, 585
FauI	CCCGC	1 cut(s)	451
Fnu4HI	GCNGC	3 cut(s)	177, 411, 414
FokI	GGATG	1 cut(s)	662
Fsp4HI	GCNGC	3 cut(s)	177, 411, 414
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	3 cut(s)	177, 411, 414
GsaI	CCCAGC	2 cut(s)	47, 183
HapII	CCGG	1 cut(s)	434
Hin1II	CATG	4 cut(s)	299, 390, 431, 589
HinfI	GANTC	1 cut(s)	60
HpaII	CCGG	1 cut(s)	434
Hpy188I	TCNGA	1 cut(s)	531
Hpy188III	TCNNGA	1 cut(s)	557
HpyAV	CCTTC	4 cut(s)	293, 328, 634, 640
HpyCH4III	ACNGT	4 cut(s)	168, 227, 242, 637
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 185, 410
HpyF3I	CTNAG	4 cut(s)	62, 69, 150, 528
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	299, 390, 431, 589
Kzo9I	GATC	4 cut(s)	192, 326, 505, 551
LmnI	GCTCC	3 cut(s)	17, 141, 455
Lsp1109I	GCAGC	2 cut(s)	163, 397
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	104, 557
MalI	GATC	4 cut(s)	194, 328, 507, 553
MbiI	CCGCTC	1 cut(s)	458
MboI	GATC	4 cut(s)	192, 326, 505, 551
MboII	GAAGA	2 cut(s)	224, 350
MflI	RGATCY	1 cut(s)	551
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	8 cut(s)	25, 109, 130, 215, 247, 298, 537, 540
MseI	TTAA	3 cut(s)	90, 261, 380
MspI	CCGG	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	434, 435
MwoI	GCNNNNNNNGC	3 cut(s)	85, 185, 410
NciI	CCSGG	2 cut(s)	434, 435
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	4 cut(s)	192, 326, 505, 551
NlaIII	CATG	4 cut(s)	299, 390, 431, 589
NlaIV	GGNNCC	3 cut(s)	316, 358, 620
NmuCI	GTSAC	2 cut(s)	104, 557
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PkrI	GCNGC	3 cut(s)	178, 412, 415
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PpuMI	RGGWCCY	2 cut(s)	356, 619
Psp1406I	AACGTT	1 cut(s)	93
Psp5II	RGGWCCY	2 cut(s)	356, 619
PspFI	CCCAGC	2 cut(s)	43, 179
PspN4I	GGNNCC	3 cut(s)	316, 358, 620
PspPI	GGNCC	2 cut(s)	356, 619
PspPPI	RGGWCCY	2 cut(s)	356, 619
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	551
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SaqAI	TTAA	3 cut(s)	90, 261, 380
SatI	GCNGC	3 cut(s)	177, 411, 414
Sau3AI	GATC	4 cut(s)	192, 326, 505, 551
Sau96I	GGNCC	2 cut(s)	356, 619
ScaI	AGTACT	1 cut(s)	443
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	2 cut(s)	434, 435
SetI	ASST	8 cut(s)	68, 75, 96, 207, 320, 370, 574, 624
SfcI	CTRYAG	2 cut(s)	363, 402
SinI	GGWCC	2 cut(s)	356, 619
SmaI	CCCGGG	1 cut(s)	435
SsiI	CCGC	3 cut(s)	251, 414, 458
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	432, 433
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	4 cut(s)	168, 227, 242, 637
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	195
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	90, 261, 380
Tru9I	TTAA	3 cut(s)	90, 261, 380
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	2 cut(s)	104, 557
TseI	GCWGC	2 cut(s)	176, 410
Tsp45I	GTSAC	2 cut(s)	104, 557
TspDTI	ATGAA	4 cut(s)	225, 312, 416, 439
TspMI	CCCGGG	1 cut(s)	433
TspRI	CASTG	1 cut(s)	640
VpaK11BI	GGWCC	2 cut(s)	356, 619
XmaI	CCCGGG	1 cut(s)	433
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.