pycom11g05790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011197
Physical Location & Seq
Forward (+)
4448932 .. 4449980
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g05790.3

Sequence Viewer

Length: 666 bp
ATGGCGGTGTGCTCTTCACTCTCGGCTGTCTCTCCTTACGCAGTTCCCAAACTGAGCTCGAAGCTGTCGGAATCTAGGGCGATGGTTTCTCGGAGTACTCAGACACATAGGACCTCCGAATTGTACAGAAACTTGGGGAAGACAAGGTTGAGTACTAGGCTGCGTGCAGCTGGGTTCGCGGAGATTGAGCCCGATCTCCGCGAAGACCCCCATGACCGTTGGGAGACTAACAGTATCAGCATGGATGATTTTAAGTTCGGGGAGTATGATGACCACCACACTTACCACGAAGGCGAAGAGAAGAAAGGAAGCTTTTGGGGATCAATAGCAGAAGACATTGAAGCGGTTGGAACCCCTACAGGTTTTCAGGGTCTTATATCATGGCTTTTTCTCCCTGCAATTGCTGCTGGAATGTATTTCAACGCTCCGGGGGAGTACTTGTACATTGGCGCCGGTCTGTTTACAATTGTGTTTTGCATCATTGAGATGGATAAGCCGGACAAACCCCACAACTTTGAACCCCAGATATACAACATGGAGAGGGGAGCTCGTGACAAGCTGATAGCGGACTACAACACCATGGATATATGGGATTTCAATGAGAAATATGGAGATCTGTGGGATTTCACTGTGACTGTGAAGAAGGAAGATATTATGAAGAGATAA

Protein Analysis

222

Amino Acids

25.26

Weight (kDa)

5.1

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011197)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43750
fragaria_vesca FvH4_4g02220 FvH4_4g02220
malus_domestica MD11G1069500.v1.1
prunus_persica Prupe.1G026900_v2.0.a1
pyrus_communis pycom11g05790
rosa_chinensis RchiOBHm_Chr4g0389531
rosa_laevigata RLG00000009976
rosa_multiflora Rmu_sc0002498.1_g000005 Rmu_sc0016342.1_g000010
rosa_roxburghii Rroxscaffold_5G00335490
rosa_rugosa Rorug03G0323700 Rorug03G0323700
rosa_samantha Rh4AG028100 Rh4BG021200 Rh4CG030000 Rh4DG021800
rosa_wichuraiana Rw0G017320 Rw4G002040 Rw4G002080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AccII CGCG 2 cut(s) 179, 201
AciI CCGC 5 cut(s) 5, 179, 199, 344, 566
AclWI GGATC 1 cut(s) 328
AcyI GRCGYC 1 cut(s) 450
AfaI GTAC 5 cut(s) 97, 125, 154, 437, 443
AgsI TTSAA 4 cut(s) 341, 421, 518, 598
AluBI AGCT 6 cut(s) 57, 64, 170, 312, 548, 559
AluI AGCT 6 cut(s) 57, 64, 170, 312, 548, 559
Alw21I GWGCWC 3 cut(s) 14, 59, 550
Alw26I GTCTC 2 cut(s) 34, 218
AlwI GGATC 1 cut(s) 328
ApeKI GCWGC 3 cut(s) 160, 167, 404
AspLEI GCGC 1 cut(s) 452
AspS9I GGNCC 1 cut(s) 111
AsuC2I CCSGG 1 cut(s) 429
AvaII GGWCC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 3 cut(s) 59, 192, 550
BauI CACGAG 1 cut(s) 549
BbsI GAAGAC 3 cut(s) 146, 210, 339
Bbv12I GWGCWC 3 cut(s) 14, 59, 550
BbvI GCAGC 3 cut(s) 147, 179, 391
BccI CCATC 2 cut(s) 76, 481
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 2 cut(s) 34, 218
BfaI CTAG 2 cut(s) 75, 156
BfmI CTRYAG 1 cut(s) 357
BfoI RGCGCY 1 cut(s) 453
BglII AGATCT 1 cut(s) 613
BisI GCNGC 3 cut(s) 161, 168, 405
BlsI GCNGC 3 cut(s) 162, 169, 406
BmcAI AGTACT 3 cut(s) 97, 154, 437
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 2 cut(s) 352, 451
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 486
BpiI GAAGAC 3 cut(s) 146, 210, 339
BplI GAGNNNNNCTC 2 cut(s) 532, 564
BpuMI CCSGG 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 428, 579
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bse118I RCCGGY 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 428, 579
BseGI GGATG 1 cut(s) 250
BseMII CTCAG 2 cut(s) 44, 113
BseXI GCAGC 3 cut(s) 147, 179, 391
BseYI CCCAGC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 186
Bsh1236I CGCG 2 cut(s) 179, 201
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 3 cut(s) 14, 59, 550
BsiSI CCGG 3 cut(s) 428, 453, 497
BsmAI GTCTC 2 cut(s) 34, 218
Bsp1286I GDGCHC 4 cut(s) 14, 59, 192, 550
Bsp1407I TGTACA 2 cut(s) 123, 441
Bsp143I GATC 3 cut(s) 193, 320, 613
Bsp19I CCATGG 1 cut(s) 579
BspACI CCGC 5 cut(s) 5, 179, 199, 344, 566
BspCNI CTCAG 2 cut(s) 45, 112
BspFNI CGCG 2 cut(s) 179, 201
BspLI GGNNCC 2 cut(s) 352, 451
BspPI GGATC 1 cut(s) 328
BspQI GCTCTTC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 452
BsrGI TGTACA 2 cut(s) 123, 441
BssAI RCCGGY 1 cut(s) 452
BssECI CCNNGG 2 cut(s) 428, 579
BssMI GATC 3 cut(s) 193, 320, 613
BssNI GRCGYC 1 cut(s) 450
BssSI CACGAG 1 cut(s) 549
BssT1I CCWWGG 1 cut(s) 579
Bst2BI CACGAG 1 cut(s) 549
Bst4CI ACNGT 4 cut(s) 218, 233, 631, 637
Bst6I CTCTTC 3 cut(s) 19, 291, 653
BstACI GRCGYC 1 cut(s) 450
BstAPI GCANNNNNTGC 1 cut(s) 404
BstAUI TGTACA 2 cut(s) 123, 441
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 53, 99
BstDSI CCRYGG 1 cut(s) 579
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 2 cut(s) 179, 201
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 3 cut(s) 196, 323, 616
BstMAI GTCTC 2 cut(s) 34, 218
BstMBI GATC 3 cut(s) 193, 320, 613
BstMWI GCNNNNNNNGC 2 cut(s) 176, 404
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 357
BstUI CGCG 2 cut(s) 179, 201
BstV1I GCAGC 3 cut(s) 147, 179, 391
BstV2I GAAGAC 3 cut(s) 146, 210, 339
BstX2I RGATCY 1 cut(s) 613
BstYI RGATCY 1 cut(s) 613
BtgI CCRYGG 1 cut(s) 579
BtgZI GCGATG 1 cut(s) 95
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 627
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 452
Cfr10I RCCGGY 1 cut(s) 452
Cfr13I GGNCC 1 cut(s) 111
Csp6I GTAC 5 cut(s) 96, 124, 153, 436, 442
CviAII CATG 5 cut(s) 212, 241, 381, 535, 580
CviQI GTAC 5 cut(s) 96, 124, 153, 436, 442
DdeI CTNAG 2 cut(s) 53, 99
DinI GGCGCC 1 cut(s) 451
DpnI GATC 3 cut(s) 195, 322, 615
DpnII GATC 3 cut(s) 193, 320, 613
Eam1104I CTCTTC 3 cut(s) 19, 291, 653
EarI CTCTTC 3 cut(s) 19, 291, 653
Ecl136II GAGCTC 2 cut(s) 57, 548
Eco130I CCWWGG 1 cut(s) 579
Eco24I GRGCYC 3 cut(s) 59, 192, 550
Eco47I GGWCC 1 cut(s) 111
Eco53kI GAGCTC 2 cut(s) 57, 548
EcoICRI GAGCTC 2 cut(s) 57, 548
EcoO109I RGGNCCY 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 579
EcoT38I GRGCYC 3 cut(s) 59, 192, 550
EgeI GGCGCC 1 cut(s) 451
EheI GGCGCC 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 5 cut(s) 215, 244, 384, 538, 583
FatI CATG 5 cut(s) 211, 240, 380, 534, 579
Fnu4HI GCNGC 3 cut(s) 161, 168, 405
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 3 cut(s) 59, 192, 550
Fsp4HI GCNGC 3 cut(s) 161, 168, 405
FspBI CTAG 2 cut(s) 75, 156
GlaI GCGC 1 cut(s) 451
GluI GCNGC 3 cut(s) 161, 168, 405
GsaI CCCAGC 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 453
HapII CCGG 3 cut(s) 428, 453, 497
HhaI GCGC 1 cut(s) 452
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 5 cut(s) 215, 244, 384, 538, 583
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 1 cut(s) 71
HpaII CCGG 3 cut(s) 428, 453, 497
Hpy166II GTNNAC 1 cut(s) 462
Hpy188I TCNGA 4 cut(s) 70, 93, 102, 118
Hpy188III TCNNGA 1 cut(s) 551
Hpy8I GTNNAC 1 cut(s) 462
HpyAV CCTTC 2 cut(s) 284, 637
HpyCH4III ACNGT 4 cut(s) 218, 233, 631, 637
HpyCH4V TGCA 3 cut(s) 167, 398, 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 404
HpyF3I CTNAG 2 cut(s) 53, 99
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 5 cut(s) 215, 244, 384, 538, 583
HspAI GCGC 1 cut(s) 450
KasI GGCGCC 1 cut(s) 449
Kzo9I GATC 3 cut(s) 193, 320, 613
LguI GCTCTTC 1 cut(s) 19
LmnI GCTCC 2 cut(s) 430, 545
LpnPI CCDG 9 cut(s) 156, 345, 353, 393, 408, 441, 466, 510, 536
Lsp1109I GCAGC 3 cut(s) 147, 179, 391
LweI GCATC 1 cut(s) 486
MaeI CTAG 2 cut(s) 75, 156
MaeIII GTNAC 2 cut(s) 551, 631
MalI GATC 3 cut(s) 195, 322, 615
MboI GATC 3 cut(s) 193, 320, 613
MboII GAAGA 8 cut(s) 6, 151, 215, 308, 313, 344, 652, 659
MfeI CAATTG 2 cut(s) 399, 465
MflI RGATCY 1 cut(s) 613
MhlI GDGCHC 4 cut(s) 14, 59, 192, 550
MluCI AATT 3 cut(s) 119, 399, 465
Mly113I GGCGCC 1 cut(s) 450
MmeI TCCRAC 2 cut(s) 48, 328
MnlI CCTC 2 cut(s) 124, 534
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 3 cut(s) 428, 453, 497
MspR9I CCNGG 1 cut(s) 429
MunI CAATTG 2 cut(s) 399, 465
MvnI CGCG 2 cut(s) 179, 201
MwoI GCNNNNNNNGC 2 cut(s) 176, 404
NarI GGCGCC 1 cut(s) 450
NciI CCSGG 1 cut(s) 429
NcoI CCATGG 1 cut(s) 579
NdeII GATC 3 cut(s) 193, 320, 613
NlaIII CATG 5 cut(s) 215, 244, 384, 538, 583
NlaIV GGNNCC 2 cut(s) 352, 451
NmuCI GTSAC 2 cut(s) 551, 631
PciSI GCTCTTC 1 cut(s) 19
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 162, 169, 406
PluTI GGCGCC 1 cut(s) 453
PpuMI RGGWCCY 1 cut(s) 111
Psp124BI GAGCTC 2 cut(s) 59, 550
Psp5II RGGWCCY 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 352, 451
PspPI GGNCC 1 cut(s) 111
PspPPI RGGWCCY 1 cut(s) 111
PsuI RGATCY 1 cut(s) 613
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 5 cut(s) 97, 125, 154, 437, 443
RsaNI GTAC 5 cut(s) 96, 124, 153, 436, 442
RseI CAYNNNNRTG 1 cut(s) 485
SacI GAGCTC 2 cut(s) 59, 550
SapI GCTCTTC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 3 cut(s) 161, 168, 405
Sau3AI GATC 3 cut(s) 193, 320, 613
Sau96I GGNCC 1 cut(s) 111
ScaI AGTACT 3 cut(s) 97, 154, 437
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 4 cut(s) 14, 59, 192, 550
SetI ASST 9 cut(s) 59, 66, 116, 149, 172, 314, 364, 550, 561
SfaNI GCATC 1 cut(s) 486
SfcI CTRYAG 1 cut(s) 357
SfoI GGCGCC 1 cut(s) 451
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 485
Sse9I AATT 3 cut(s) 119, 399, 465
SsiI CCGC 5 cut(s) 5, 179, 199, 344, 566
SspDI GGCGCC 1 cut(s) 449
SspMI CTAG 2 cut(s) 75, 156
SstI GAGCTC 2 cut(s) 59, 550
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 4 cut(s) 218, 233, 631, 637
TaqI TCGA 1 cut(s) 59
TasI AATT 3 cut(s) 119, 399, 465
TatI WGTACW 5 cut(s) 95, 123, 152, 435, 441
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 634
TseFI GTSAC 2 cut(s) 551, 631
TseI GCWGC 3 cut(s) 160, 167, 404
Tsp45I GTSAC 2 cut(s) 551, 631
TspRI CASTG 1 cut(s) 634
VpaK11BI GGWCC 1 cut(s) 111
XspI CTAG 2 cut(s) 75, 156
ZrmI AGTACT 3 cut(s) 97, 154, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.