AT5G45450

OPT oligopeptide transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0018715
Physical Location & Seq
Forward (+)
18414991 .. 18415811
821 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45450.1

Sequence Viewer

Length: 651 bp
ATGCTGGCTGGCCTAGCAACATGTGGTTTCATGATGAACATAGTCTCGAGAGCTTCAGATCTGACACAAGACTTCAAGACAGGTTACCTCACTTTATCATCTCCAAAGTCAATGTTTGTGAGCCAAGTGATTGGAACAGCAATGGGTTGTGTGGTATCTCCTTGCGTTTTCTGGCTATTCTATAAAGCATTTGATGATTTAGGCCTCCCAAACACTGAATACCATACTCCATTTGCTACCGTATATCGAAGCATGGCTAAACTAGGAGTACCAAGAGAATGTCTCGTTCTATGCTACGTGTTCTTCGGTGTGGCGATTCTCGTAAACATAGTAAAAGATAGTCTCCATAGCAAATGGGGAAGGTTCATTCCACTTTCCATGGCAATGGCTATACCGTTTTTCTTGGGACTTTACTTTGCAATTGAAATGTGTGTGGGAAGTTTGATACTTTTTATCTGGGAAAGAGTAGATGCAGCCAAGGCTGAAGCTTTTGGGACAGCGGTGGCTTCTTGTTTGATATGCAGAGATGGCACTTGGTCTAAGCCAAGCTCAGTGCTCGCTGTAGCCGCAGTTAATCCTCCTGTTTGCATGAAGTTTCTCTCTTCTCAAACAAATTCAAAAGTCGACAACATTCTGCAAGGATCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OPT

Protein Analysis

216

Amino Acids

23.56

Weight (kDa)

8.36

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 1 - 184 6.3e-45 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018715)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45450
fragaria_vesca FvH4_7g32520
malus_domestica MD14G1126100.v1.1
pyrus_communis pycom06g10970
rosa_chinensis RchiOBHm_Chr2g0168901
rosa_multiflora Rmu_co8144192.1_g000001 Rmu_sc0001035.1_g000057 Rmu_sc0026870.1_g000001
rosa_rugosa Rorug05G0225400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 624
AciI CCGC 2 cut(s) 500, 567
AclWI GGATC 2 cut(s) 636, 649
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 2 cut(s) 39, 504
AfaI GTAC 1 cut(s) 270
AflIII ACRYGT 2 cut(s) 20, 297
AgsI TTSAA 3 cut(s) 76, 425, 618
AluBI AGCT 3 cut(s) 53, 488, 549
AluI AGCT 3 cut(s) 53, 488, 549
Alw21I GWGCWC 1 cut(s) 558
Alw26I GTCTC 3 cut(s) 49, 287, 347
AlwI GGATC 2 cut(s) 636, 649
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 2 cut(s) 10, 202
ApeKI GCWGC 1 cut(s) 473
ApoI RAATTY 1 cut(s) 613
AvaI CYCGRG 1 cut(s) 46
BamHI GGATCC 1 cut(s) 641
Bbv12I GWGCWC 1 cut(s) 558
BbvI GCAGC 1 cut(s) 485
BccI CCATC 1 cut(s) 521
BcoDI GTCTC 3 cut(s) 49, 287, 347
BfaI CTAG 2 cut(s) 14, 263
BfmI CTRYAG 1 cut(s) 561
BglII AGATCT 1 cut(s) 58
BisI GCNGC 2 cut(s) 474, 567
BlsI GCNGC 2 cut(s) 475, 568
BmeT110I CYCGRG 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 643
BmsI GCATC 1 cut(s) 460
BplI GAGNNNNNCTC 2 cut(s) 267, 299
BsaAI YACGTR 1 cut(s) 298
BsaJI CCNNGG 2 cut(s) 378, 477
Bse3DI GCAATG 2 cut(s) 147, 390
BseDI CCNNGG 2 cut(s) 378, 477
BseMI GCAATG 2 cut(s) 147, 390
BseMII CTCAG 1 cut(s) 564
BseXI GCAGC 1 cut(s) 485
BshFI GGCC 2 cut(s) 12, 204
BsiHKAI GWGCWC 1 cut(s) 558
BsiHKCI CYCGRG 1 cut(s) 46
BslFI GGGAC 2 cut(s) 420, 508
BsmAI GTCTC 3 cut(s) 49, 287, 347
BsmFI GGGAC 2 cut(s) 420, 508
BsnI GGCC 2 cut(s) 12, 204
BsoBI CYCGRG 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 558
Bsp143I GATC 2 cut(s) 58, 641
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 2 cut(s) 500, 567
BspANI GGCC 2 cut(s) 12, 204
BspCNI CTCAG 1 cut(s) 563
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 643
BspPI GGATC 2 cut(s) 636, 649
BsrDI GCAATG 2 cut(s) 147, 390
BssECI CCNNGG 2 cut(s) 378, 477
BssMI GATC 2 cut(s) 58, 641
BssT1I CCWWGG 2 cut(s) 378, 477
Bst4CI ACNGT 2 cut(s) 241, 396
Bst6I CTCTTC 1 cut(s) 607
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 3 cut(s) 6, 10, 558
BstDEI CTNAG 2 cut(s) 540, 550
BstDSI CCRYGG 1 cut(s) 378
BstEII GGTNACC 1 cut(s) 83
BstKTI GATC 2 cut(s) 61, 644
BstMAI GTCTC 3 cut(s) 49, 287, 347
BstMBI GATC 2 cut(s) 58, 641
BstMWI GCNNNNNNNGC 4 cut(s) 14, 479, 528, 566
BstNSI RCATGY 1 cut(s) 24
BstPI GGTNACC 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 1 cut(s) 485
BstX2I RGATCY 2 cut(s) 58, 641
BstXI CCANNNNNNTGG 2 cut(s) 131, 385
BstYI RGATCY 2 cut(s) 58, 641
BsuRI GGCC 2 cut(s) 12, 204
BtgI CCRYGG 1 cut(s) 378
BtsIMutI CAGTG 2 cut(s) 213, 558
Cac8I GCNNGC 3 cut(s) 6, 10, 558
CciI TCATGA 1 cut(s) 30
Csp6I GTAC 1 cut(s) 269
CviAII CATG 5 cut(s) 21, 31, 253, 379, 589
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 2 cut(s) 540, 550
DpnI GATC 2 cut(s) 60, 643
DpnII GATC 2 cut(s) 58, 641
Eam1104I CTCTTC 1 cut(s) 607
EarI CTCTTC 1 cut(s) 607
Eco130I CCWWGG 2 cut(s) 378, 477
Eco147I AGGCCT 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 39, 504
Eco88I CYCGRG 1 cut(s) 46
Eco91I GGTNACC 1 cut(s) 83
EcoO65I GGTNACC 1 cut(s) 83
EcoT14I CCWWGG 2 cut(s) 378, 477
ErhI CCWWGG 2 cut(s) 378, 477
FaeI CATG 5 cut(s) 24, 34, 256, 382, 592
FaqI GGGAC 2 cut(s) 420, 508
FatI CATG 5 cut(s) 20, 30, 252, 378, 588
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 2 cut(s) 474, 567
Fsp4HI GCNGC 2 cut(s) 474, 567
FspBI CTAG 2 cut(s) 14, 263
GluI GCNGC 2 cut(s) 474, 567
HaeIII GGCC 2 cut(s) 12, 204
Hin1II CATG 5 cut(s) 24, 34, 256, 382, 592
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 1 cut(s) 316
Hpy166II GTNNAC 2 cut(s) 325, 625
Hpy188I TCNGA 2 cut(s) 58, 63
Hpy188III TCNNGA 4 cut(s) 31, 46, 48, 76
Hpy8I GTNNAC 2 cut(s) 325, 625
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 2 cut(s) 241, 396
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 5 cut(s) 419, 473, 522, 588, 637
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 479, 528, 566
HpyF3I CTNAG 2 cut(s) 540, 550
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 5 cut(s) 24, 34, 256, 382, 592
Kzo9I GATC 2 cut(s) 58, 641
LpnPI CCDG 4 cut(s) 66, 157, 442, 594
Lsp1109I GCAGC 1 cut(s) 485
LweI GCATC 1 cut(s) 460
MaeI CTAG 2 cut(s) 14, 263
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 60, 643
MboI GATC 2 cut(s) 58, 641
MboII GAAGA 2 cut(s) 295, 594
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 2 cut(s) 58, 641
MhlI GDGCHC 1 cut(s) 558
MluCI AATT 2 cut(s) 420, 613
MnlI CCTC 3 cut(s) 98, 215, 588
MseI TTAA 2 cut(s) 573, 649
MslI CAYNNNNRTG 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 500
MunI CAATTG 1 cut(s) 420
MwoI GCNNNNNNNGC 4 cut(s) 14, 479, 528, 566
NcoI CCATGG 1 cut(s) 378
NdeII GATC 2 cut(s) 58, 641
NlaIII CATG 5 cut(s) 24, 34, 256, 382, 592
NlaIV GGNNCC 1 cut(s) 643
NspI RCATGY 1 cut(s) 24
PaeR7I CTCGAG 1 cut(s) 46
PagI TCATGA 1 cut(s) 30
PceI AGGCCT 1 cut(s) 204
PciI ACATGT 1 cut(s) 20
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 2 cut(s) 475, 568
Ppu21I YACGTR 1 cut(s) 298
PscI ACATGT 1 cut(s) 20
PspEI GGTNACC 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 643
PsuI RGATCY 2 cut(s) 58, 641
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 383
SalI GTCGAC 1 cut(s) 623
SaqAI TTAA 2 cut(s) 573, 649
SatI GCNGC 2 cut(s) 474, 567
Sau3AI GATC 2 cut(s) 58, 641
SduI GDGCHC 1 cut(s) 558
SetI ASST 7 cut(s) 55, 85, 90, 300, 365, 490, 551
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 1 cut(s) 561
Sfr274I CTCGAG 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 2 cut(s) 420, 613
SseBI AGGCCT 1 cut(s) 204
SsiI CCGC 2 cut(s) 500, 567
SspMI CTAG 2 cut(s) 14, 263
StuI AGGCCT 1 cut(s) 204
StyI CCWWGG 2 cut(s) 378, 477
TaaI ACNGT 2 cut(s) 241, 396
TaiI ACGT 1 cut(s) 300
TaqI TCGA 3 cut(s) 47, 247, 624
TasI AATT 2 cut(s) 420, 613
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 2 cut(s) 573, 649
Tru9I TTAA 2 cut(s) 573, 649
TscAI CASTG 2 cut(s) 220, 558
TseI GCWGC 1 cut(s) 473
TspDTI ATGAA 4 cut(s) 19, 50, 355, 605
TspRI CASTG 2 cut(s) 220, 558
XapI RAATTY 1 cut(s) 613
XceI RCATGY 1 cut(s) 24
XhoI CTCGAG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 2 cut(s) 14, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.