Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0018715

Physical Location & Seq

Genomic Coordinates Forward (+)

20092223 .. 20092465

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1126100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCCACTTCCGATGGTCATGGGCGTTCCATTTCTCGTCGGGGCATACTTTGCCATAGACATGTGCATAGGGAGTCTGATTGTGTTTGTATGGCACAAGATTAACAGCAAGAAGGCTGTGCTGATGGTTCCAGCAGTTGCTTCCGGGTTGATTTGCGGGGAAGGGTTGTGGACTCTCCCCGCATCGGTTCTTGCTCTGGCCAAAGTAAAACCCCCAATGTGCATGAAATTTTTGGGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0010035 GO:0010038 GO:0010039 GO:0010154 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0042221 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

81

Amino Acids

8.51

Weight (kDa)

9.26

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	2 - 64	3.7e-13	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45450
fragaria_vesca	FvH4_7g32520
malus_domestica	MD14G1126100.v1.1
pyrus_communis	pycom06g10970
rosa_chinensis	RchiOBHm_Chr2g0168901
rosa_multiflora	Rmu_co8144192.1_g000001 Rmu_sc0001035.1_g000057 Rmu_sc0026870.1_g000001
rosa_rugosa	Rorug05G0225400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	156, 180
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	184
AflIII	ACRYGT	1 cut(s)	60
AoxI	GGCC	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	200
BccI	CCATC	2 cut(s)	7, 118
BcnI	CCSGG	1 cut(s)	145
BfaI	CTAG	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	129, 238
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	184
BsnI	GGCC	1 cut(s)	200
BspACI	CCGC	2 cut(s)	156, 180
BspANI	GGCC	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	129, 238
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	200
CviAII	CATG	3 cut(s)	19, 61, 223
CviJI	RGCY	2 cut(s)	116, 200
CviKI_1	RGCY	2 cut(s)	116, 200
EaeI	YGGCCR	1 cut(s)	198
FaeI	CATG	3 cut(s)	22, 64, 226
FaiI	YATR	7 cut(s)	20, 46, 56, 62, 68, 91, 224
FatI	CATG	3 cut(s)	18, 60, 222
FauI	CCCGC	2 cut(s)	149, 187
FspBI	CTAG	1 cut(s)	241
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	3 cut(s)	22, 64, 226
HinfI	GANTC	2 cut(s)	73, 172
HpaII	CCGG	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	2 cut(s)	12, 78
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	106, 155
HpyCH4V	TGCA	2 cut(s)	66, 222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Hsp92II	CATG	3 cut(s)	22, 64, 226
LpnPI	CCDG	3 cut(s)	144, 157, 182
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	1 cut(s)	227
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	82, 166
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	50
NciI	CCSGG	1 cut(s)	145
NlaIII	CATG	3 cut(s)	22, 64, 226
NlaIV	GGNNCC	2 cut(s)	129, 238
NspI	RCATGY	1 cut(s)	64
PciI	ACATGT	1 cut(s)	60
PleI	GAGTC	2 cut(s)	81, 166
PpsI	GAGTC	2 cut(s)	81, 166
PscI	ACATGT	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	129, 238
RseI	CAYNNNNRTG	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	102
SchI	GAGTC	2 cut(s)	82, 166
ScrFI	CCNGG	1 cut(s)	145
SfaNI	GCATC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	2 cut(s)	156, 180
SspMI	CTAG	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	143
TasI	AATT	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TspDTI	ATGAA	1 cut(s)	239
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	1 cut(s)	64
XspI	CTAG	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.