Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8144192.1

Orthogroup ID

OG0018715

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 332

Gene Structure 332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8144192.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 332 bp

ttttgaagcgttacgagaccaagtacaagatctacaggtttgttccgaatgcaatggccatggcagtcccattctatctcggctcctacttcgtgattgacatgtgtttgggaagcttggtccttttctgctggaagttatggaacaaaaaacaggcggaggatttggcaccggcggttgcatctggtctcatctgtggcgagtctatgtggggtgttccggctgcgatcctatctctggccaatgtcaaagcaccaatatgcatgaagttcctctcttactcggacaacgatagagttgattcgtttttatcttcatcaggatctagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

109

Amino Acids

12.11

Weight (kDa)

8.71

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45450
fragaria_vesca	FvH4_7g32520
malus_domestica	MD14G1126100.v1.1
pyrus_communis	pycom06g10970
rosa_chinensis	RchiOBHm_Chr2g0168901
rosa_multiflora	Rmu_co8144192.1_g000001 Rmu_sc0001035.1_g000057 Rmu_sc0026870.1_g000001
rosa_rugosa	Rorug05G0225400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AciI	CCGC	2 cut(s)	157, 175
AclWI	GGATC	2 cut(s)	222, 330
AcoI	YGGCCR	2 cut(s)	56, 239
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	237
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	6
AluBI	AGCT	2 cut(s)	116, 329
AluI	AGCT	2 cut(s)	116, 329
Alw26I	GTCTC	2 cut(s)	10, 193
AlwI	GGATC	2 cut(s)	222, 330
AoxI	GGCC	2 cut(s)	56, 239
ApeKI	GCWGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	120
BalI	TGGCCA	2 cut(s)	58, 241
BanI	GGYRCC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	210
BcoDI	GTCTC	2 cut(s)	10, 193
BfaI	CTAG	2 cut(s)	326, 330
BfmI	CTRYAG	1 cut(s)	33
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	84, 170
BmsI	GCATC	1 cut(s)	190
BsaI	GGTCTC	2 cut(s)	10, 193
BsaJI	CCNNGG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse118I	RCCGGY	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	210
BshFI	GGCC	2 cut(s)	58, 241
BshNI	GGYRCC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	172, 220
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	10, 193
BsmFI	GGGAC	1 cut(s)	52
BsmI	GAATGC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	58, 241
Bso31I	GGTCTC	2 cut(s)	10, 193
Bsp143I	GATC	3 cut(s)	29, 227, 322
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	2 cut(s)	157, 175
BspANI	GGCC	2 cut(s)	58, 241
BspLI	GGNNCC	2 cut(s)	84, 170
BspPI	GGATC	2 cut(s)	222, 330
BspT107I	GGYRCC	1 cut(s)	168
BspTNI	GGTCTC	2 cut(s)	10, 193
BsrDI	GCAATG	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	3 cut(s)	29, 227, 322
BssT1I	CCWWGG	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	59
BstKTI	GATC	3 cut(s)	32, 230, 325
BstMAI	GTCTC	2 cut(s)	10, 193
BstMBI	GATC	3 cut(s)	29, 227, 322
BstNSI	RCATGY	1 cut(s)	105
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	29, 322
BstYI	RGATCY	2 cut(s)	29, 322
BsuRI	GGCC	2 cut(s)	58, 241
BtgI	CCRYGG	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	3 cut(s)	60, 102, 264
CviJI	RGCY	6 cut(s)	58, 83, 116, 223, 241, 329
CviKI_1	RGCY	6 cut(s)	58, 83, 116, 223, 241, 329
CviQI	GTAC	1 cut(s)	24
DpnI	GATC	3 cut(s)	31, 229, 324
DpnII	GATC	3 cut(s)	29, 227, 322
EaeI	YGGCCR	2 cut(s)	56, 239
EciI	GGCGGA	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	59
Eco31I	GGTCTC	2 cut(s)	10, 193
Eco47I	GGWCC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	59
EcoT22I	ATGCAT	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	3 cut(s)	63, 105, 267
FaiI	YATR	6 cut(s)	61, 103, 141, 208, 261, 265
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	3 cut(s)	59, 101, 263
Fnu4HI	GCNGC	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	224
FspBI	CTAG	2 cut(s)	326, 330
GluI	GCNGC	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	58, 241
HapII	CCGG	2 cut(s)	172, 220
Hin1II	CATG	3 cut(s)	63, 105, 267
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	2 cut(s)	202, 301
HpaII	CCGG	2 cut(s)	172, 220
Hpy188I	TCNGA	2 cut(s)	47, 285
Hpy188III	TCNNGA	2 cut(s)	93, 320
HpyCH4V	TGCA	3 cut(s)	52, 181, 263
Hsp92II	CATG	3 cut(s)	63, 105, 267
Kzo9I	GATC	3 cut(s)	29, 227, 322
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	8 cut(s)	21, 117, 139, 170, 185, 223, 233, 305
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	2 cut(s)	326, 330
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	3 cut(s)	31, 229, 324
MboI	GATC	3 cut(s)	29, 227, 322
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	2 cut(s)	29, 322
MlsI	TGGCCA	2 cut(s)	58, 241
MluNI	TGGCCA	2 cut(s)	58, 241
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	2 cut(s)	153, 283
Mox20I	TGGCCA	2 cut(s)	58, 241
Mph1103I	ATGCAT	1 cut(s)	265
MscI	TGGCCA	2 cut(s)	58, 241
MslI	CAYNNNNRTG	1 cut(s)	258
Msp20I	TGGCCA	2 cut(s)	58, 241
MspI	CCGG	2 cut(s)	172, 220
Mva1269I	GAATGC	1 cut(s)	54
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	3 cut(s)	29, 227, 322
NlaIII	CATG	3 cut(s)	63, 105, 267
NlaIV	GGNNCC	2 cut(s)	84, 170
NmeAIII	GCCGAG	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	1 cut(s)	105
PciI	ACATGT	1 cut(s)	101
PctI	GAATGC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	225
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PscI	ACATGT	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	84, 170
PspPI	GGNCC	1 cut(s)	120
PsuI	RGATCY	2 cut(s)	29, 322
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	258
SatI	GCNGC	1 cut(s)	224
Sau3AI	GATC	3 cut(s)	29, 227, 322
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	211
SetI	ASST	3 cut(s)	40, 118, 331
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	33
SgrAI	CRCCGGYG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	258
SsiI	CCGC	2 cut(s)	157, 175
SspMI	CTAG	2 cut(s)	326, 330
StyI	CCWWGG	1 cut(s)	59
TatI	WGTACW	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	280, 305
VpaK11BI	GGWCC	1 cut(s)	120
XceI	RCATGY	1 cut(s)	105
XspI	CTAG	2 cut(s)	326, 330
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.