Rmu_sc0001035.1_g000057

metal-nicotianamine transporter

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001035.1
Physical Location & Seq
Reverse (-)
293403 .. 293717
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001035.1_g000057.1.cds

Sequence Viewer

Length: 315 bp
ctgtgtcgcacttgtagtctccattttcgcatttgccattaccaaactgagcttttgaagggttatgagacagagtacaagatctacagatttgttccaaatgcaatggccatggcagtcccgttctatctcggctcctacctcgtgattgacatgtgcataggaagcttgatccttttcagctggaagttatggaacaaacaacaggctgaggatttagcaccagcggttgcatctggtctcatttgtgccgagtctatgtggggtgttccagctgcgatgatcttgccaatgtcaaagcaccaatatgcatga
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.86

Weight (kDa)

7.81

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018715)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45450
fragaria_vesca FvH4_7g32520
malus_domestica MD14G1126100.v1.1
pyrus_communis pycom06g10970
rosa_chinensis RchiOBHm_Chr2g0168901
rosa_multiflora Rmu_co8144192.1_g000001 Rmu_sc0001035.1_g000057 Rmu_sc0026870.1_g000001
rosa_rugosa Rorug05G0225400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AclWI GGATC 1 cut(s) 166
AcoI YGGCCR 1 cut(s) 108
AfaI GTAC 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 4 cut(s) 52, 168, 183, 275
AluI AGCT 4 cut(s) 52, 168, 183, 275
Alw26I GTCTC 3 cut(s) 23, 62, 245
AlwI GGATC 1 cut(s) 166
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 275
BalI TGGCCA 1 cut(s) 110
BauI CACGAG 1 cut(s) 143
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 262
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BcoDI GTCTC 3 cut(s) 23, 62, 245
BfmI CTRYAG 1 cut(s) 85
BglII AGATCT 1 cut(s) 81
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 136
BmsI GCATC 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 39, 201
BseXI GCAGC 1 cut(s) 262
BshFI GGCC 1 cut(s) 110
BslFI GGGAC 1 cut(s) 104
BsmAI GTCTC 3 cut(s) 23, 62, 245
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 1 cut(s) 110
Bso31I GGTCTC 1 cut(s) 245
Bsp143I GATC 3 cut(s) 81, 171, 282
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 2 cut(s) 40, 202
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 3 cut(s) 81, 171, 282
BssSI CACGAG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 48, 210
BstDSI CCRYGG 1 cut(s) 111
BstKTI GATC 3 cut(s) 84, 174, 285
BstMAI GTCTC 3 cut(s) 23, 62, 245
BstMBI GATC 3 cut(s) 81, 171, 282
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 111
BtgZI GCGATG 1 cut(s) 293
Csp6I GTAC 1 cut(s) 76
CviAII CATG 3 cut(s) 112, 154, 312
CviJI RGCY 7 cut(s) 52, 110, 135, 168, 183, 209, 275
CviKI_1 RGCY 7 cut(s) 52, 110, 135, 168, 183, 209, 275
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 2 cut(s) 48, 210
DpnI GATC 3 cut(s) 83, 173, 284
DpnII GATC 3 cut(s) 81, 171, 282
EaeI YGGCCR 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 3 cut(s) 115, 157, 315
FaiI YATR 8 cut(s) 66, 113, 155, 161, 193, 260, 309, 313
FaqI GGGAC 1 cut(s) 104
FatI CATG 3 cut(s) 111, 153, 311
Fnu4HI GCNGC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 276
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 3 cut(s) 115, 157, 315
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 1 cut(s) 254
Hpy188III TCNNGA 1 cut(s) 145
HpyAV CCTTC 1 cut(s) 52
HpyCH4V TGCA 4 cut(s) 104, 159, 233, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpyF3I CTNAG 2 cut(s) 48, 210
Hsp92II CATG 3 cut(s) 115, 157, 315
Kzo9I GATC 3 cut(s) 81, 171, 282
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 5 cut(s) 169, 191, 222, 237, 285
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 242
MalI GATC 3 cut(s) 83, 173, 284
MboI GATC 3 cut(s) 81, 171, 282
MflI RGATCY 1 cut(s) 81
MlsI TGGCCA 1 cut(s) 110
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 2 cut(s) 152, 205
Mox20I TGGCCA 1 cut(s) 110
Mph1103I ATGCAT 1 cut(s) 313
MscI TGGCCA 1 cut(s) 110
MslI CAYNNNNRTG 1 cut(s) 306
Msp20I TGGCCA 1 cut(s) 110
MspA1I CMGCKG 3 cut(s) 183, 227, 275
MwoI GCNNNNNNNGC 1 cut(s) 165
NcoI CCATGG 1 cut(s) 111
NdeII GATC 3 cut(s) 81, 171, 282
NlaIII CATG 3 cut(s) 115, 157, 315
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 2 cut(s) 111, 277
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 1 cut(s) 157
PciI ACATGT 1 cut(s) 153
PkrI GCNGC 1 cut(s) 277
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PscI ACATGT 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 136
PsuI RGATCY 1 cut(s) 81
PvuII CAGCTG 2 cut(s) 183, 275
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 306
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 3 cut(s) 81, 171, 282
SchI GAGTC 1 cut(s) 263
SetI ASST 5 cut(s) 54, 144, 170, 185, 277
SfaNI GCATC 1 cut(s) 242
SfcI CTRYAG 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 306
SsiI CCGC 1 cut(s) 227
StyI CCWWGG 1 cut(s) 111
TatI WGTACW 1 cut(s) 75
TseI GCWGC 1 cut(s) 275
XceI RCATGY 1 cut(s) 157
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.