Rmu_sc0026870.1_g000001

metal-nicotianamine transporter

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026870.1
Physical Location & Seq
Forward (+)
1 .. 427
427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026870.1_g000001.1.cds

Sequence Viewer

Length: 353 bp
ctgctgtggtcataaatttgattactgagcttctaaagcgttatgagaccaagtacaggttgtacagatttattcctagcccaatgtgcatggccatcccattttatcttggttcatactttgccattgacatgtgtttggggagcttgattctcttcttgtggcaaagaatgaacaaacaaaaggccgatgactttgcaccagcagtcgcatctggactcatttgcggtgaatctttgtggggtattccagctgctatcctttcactggccaatgtgaaacctccgatctgtatgaagttcctctctgcttctgccaacgaaaaagtcgaaaaacttttatctggtcattag
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

12.95

Weight (kDa)

8.97

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018715)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45450
fragaria_vesca FvH4_7g32520
malus_domestica MD14G1126100.v1.1
pyrus_communis pycom06g10970
rosa_chinensis RchiOBHm_Chr2g0168901
rosa_multiflora Rmu_co8144192.1_g000001 Rmu_sc0001035.1_g000057 Rmu_sc0026870.1_g000001
rosa_rugosa Rorug05G0225400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AcoI YGGCCR 2 cut(s) 92, 269
AcsI RAATTY 1 cut(s) 15
AfaI GTAC 2 cut(s) 55, 64
AfiI CCNNNNNNNGG 2 cut(s) 56, 267
AflIII ACRYGT 1 cut(s) 131
AluBI AGCT 3 cut(s) 30, 146, 253
AluI AGCT 3 cut(s) 30, 146, 253
Alw26I GTCTC 1 cut(s) 40
AoxI GGCC 3 cut(s) 92, 185, 269
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 241
BalI TGGCCA 2 cut(s) 94, 271
BbvI GCAGC 1 cut(s) 240
BccI CCATC 1 cut(s) 103
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 1 cut(s) 77
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
BmsI GCATC 1 cut(s) 220
BsaI GGTCTC 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 267
Bse1I ACTGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 56, 267
BseMII CTCAG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 240
BshFI GGCC 3 cut(s) 94, 187, 271
BslI CCNNNNNNNGG 2 cut(s) 56, 267
BsmAI GTCTC 1 cut(s) 40
BsnI GGCC 3 cut(s) 94, 187, 271
Bso31I GGTCTC 1 cut(s) 40
Bsp1407I TGTACA 1 cut(s) 62
Bsp143I GATC 1 cut(s) 287
BspACI CCGC 1 cut(s) 227
BspANI GGCC 3 cut(s) 94, 187, 271
BspCNI CTCAG 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 62
BsrI ACTGG 1 cut(s) 272
BssMI GATC 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 160
BstAUI TGTACA 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 1 cut(s) 287
BstMWI GCNNNNNNNGC 2 cut(s) 36, 86
BstNSI RCATGY 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 240
BsuRI GGCC 3 cut(s) 94, 187, 271
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 265
Csp6I GTAC 2 cut(s) 54, 63
CviAII CATG 2 cut(s) 90, 132
CviJI RGCY 7 cut(s) 30, 80, 94, 146, 187, 253, 271
CviKI_1 RGCY 7 cut(s) 30, 80, 94, 146, 187, 253, 271
CviQI GTAC 2 cut(s) 54, 63
DdeI CTNAG 1 cut(s) 26
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
EaeI YGGCCR 2 cut(s) 92, 269
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 40
FaeI CATG 2 cut(s) 93, 135
FaiI YATR 6 cut(s) 13, 44, 91, 117, 133, 295
FatI CATG 2 cut(s) 89, 131
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 1 cut(s) 77
GluI GCNGC 1 cut(s) 254
HaeIII GGCC 3 cut(s) 94, 187, 271
Hin1II CATG 2 cut(s) 93, 135
HinfI GANTC 3 cut(s) 150, 218, 232
HphI GGTGA 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 1 cut(s) 215
HpyCH4V TGCA 2 cut(s) 89, 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 86
HpyF3I CTNAG 1 cut(s) 26
Hsp92II CATG 2 cut(s) 93, 135
Kzo9I GATC 1 cut(s) 287
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 6 cut(s) 42, 200, 215, 253, 263, 329
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 77
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 1 cut(s) 147
MlsI TGGCCA 2 cut(s) 94, 271
MluCI AATT 1 cut(s) 15
MluNI TGGCCA 2 cut(s) 94, 271
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 2 cut(s) 293, 313
Mox20I TGGCCA 2 cut(s) 94, 271
MscI TGGCCA 2 cut(s) 94, 271
MslI CAYNNNNRTG 1 cut(s) 130
Msp20I TGGCCA 2 cut(s) 94, 271
MspA1I CMGCKG 1 cut(s) 253
MwoI GCNNNNNNNGC 2 cut(s) 36, 86
NdeII GATC 1 cut(s) 287
NlaIII CATG 2 cut(s) 93, 135
NspI RCATGY 1 cut(s) 135
PciI ACATGT 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 326
PfeI GAWTC 2 cut(s) 150, 232
PkrI GCNGC 1 cut(s) 255
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PscI ACATGT 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 253
RsaI GTAC 2 cut(s) 55, 64
RsaNI GTAC 2 cut(s) 54, 63
RseI CAYNNNNRTG 1 cut(s) 130
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 1 cut(s) 287
SchI GAGTC 1 cut(s) 212
SetI ASST 5 cut(s) 32, 61, 148, 255, 285
SfaNI GCATC 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 130
Sse9I AATT 1 cut(s) 15
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 77
TaqI TCGA 1 cut(s) 329
TasI AATT 1 cut(s) 15
TatI WGTACW 2 cut(s) 53, 62
TfiI GAWTC 2 cut(s) 150, 232
TscAI CASTG 1 cut(s) 272
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 3 cut(s) 104, 187, 310
TspRI CASTG 1 cut(s) 272
XapI RAATTY 1 cut(s) 15
XceI RCATGY 1 cut(s) 135
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.