Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014888

Physical Location & Seq

Genomic Coordinates Forward (+)

19309227 .. 19310272

Gene Structure 1046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGGGATTCCGACAGGGATTCCGGTGGAGGGCAAAACGGGAACAACCAGAACGGACAGTCCTCCTTGTCTCCAAGAGAGCAAGACAGGTTCTTGCCGATCGCTAACGTCAGCCGGATCATGAAGAAGGCCTTGCCCGCCAACGCCAAGATCTCTAAAGATGCCAAAGAGACGATGCAGGAGTGTGTCTCCGAGTTCATCAGCTTCGTCACCGGAGAAGCATCTGATAAGTGTCAGAAGGAGAAGAGGAAGACGATCAACGGAGACGATTTGCTCTGGGCTATGACTACTCTAGGTTTTGAGGATTATGTTGAGCCATTGAAAGTTTACTTGCAGAGGTTTAGGGAGATCGAAGGGGAGAGGACTGGACTAGGGAGGCCACAGACTGGTGGTGAGGTCGGAGAGCATCAGAGAGATGCTGTCGGAGATGGCGGTGGGTTCTACGGTGGTGGTGGTGGGATGCAGTATCACCAACATCATCAGTTTCTTCACCAGCAGAACCATATGTATGGAGCCACAGGTGGCGGTAGCGACAGTGGAGGTGGAGCTGCCTCCGGTAGGACAAGGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

190

Amino Acids

20.53

Weight (kDa)

6.07

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	31 - 95	2.5e-28	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Histone	PF00125	32 - 95	5.6e-06	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47640
fragaria_vesca	FvH4_3g29360
malus_domestica	MD03G1183400.v1.1 MD11G1200400.v1.1
prunus_persica	Prupe.4G242700_v2.0.a1
pyrus_communis	pycom03g13700 pycom11g17280
rosa_chinensis	RchiOBHm_Chr5g0053731
rosa_laevigata	RLG00000034898
rosa_multiflora	Rmu_sc0001759.1_g000047
rosa_roxburghii	Rroxscaffold_1G00026870
rosa_rugosa	Rorug05G0281800
rosa_samantha	Rh5AG352700 Rh5BG364400 Rh5DG379200
rosa_wichuraiana	Rw5G033320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	386
AciI	CCGC	3 cut(s)	138, 432, 525
AclWI	GGATC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	30, 386, 558
AgsI	TTSAA	1 cut(s)	322
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
AluBI	AGCT	2 cut(s)	204, 548
AluI	AGCT	2 cut(s)	204, 548
Alw26I	GTCTC	4 cut(s)	75, 164, 193, 258
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	2 cut(s)	129, 377
ApeKI	GCWGC	1 cut(s)	548
AsuHPI	GGTGA	4 cut(s)	202, 404, 461, 482
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	1 cut(s)	422
BcoDI	GTCTC	4 cut(s)	75, 164, 193, 258
BfaI	CTAG	2 cut(s)	293, 371
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
BmiI	GGNNCC	1 cut(s)	514
BmsI	GCATC	6 cut(s)	151, 165, 230, 406, 415, 450
BpiI	GAAGAC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BsaWI	WCCGGW	3 cut(s)	23, 212, 554
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 386, 558
Bse1I	ACTGG	2 cut(s)	370, 391
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	30, 386, 558
BseNI	ACTGG	2 cut(s)	370, 391
BseXI	GCAGC	1 cut(s)	535
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	131, 379
BsiEI	CGRYCG	1 cut(s)	102
BsiSI	CCGG	4 cut(s)	24, 115, 213, 555
BslI	CCNNNNNNNGG	3 cut(s)	30, 386, 558
BsmAI	GTCTC	4 cut(s)	75, 164, 193, 258
BsmBI	CGTCTC	2 cut(s)	164, 258
BsnI	GGCC	2 cut(s)	131, 379
Bsp143I	GATC	5 cut(s)	99, 117, 150, 255, 348
BspACI	CCGC	3 cut(s)	138, 432, 525
BspANI	GGCC	2 cut(s)	131, 379
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	514
BspPI	GGATC	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	370, 391
BssMI	GATC	5 cut(s)	99, 117, 150, 255, 348
Bst4CI	ACNGT	3 cut(s)	60, 446, 536
Bst6I	CTCTTC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	138
BstENI	CCTNNNNNAGG	1 cut(s)	556
BstF5I	GGATG	1 cut(s)	465
BstKTI	GATC	5 cut(s)	102, 120, 153, 258, 351
BstMAI	GTCTC	4 cut(s)	75, 164, 193, 258
BstMBI	GATC	5 cut(s)	99, 117, 150, 255, 348
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	535
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	131, 379
BtsCI	GGATG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	1 cut(s)	138
CciI	TCATGA	1 cut(s)	120
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	8 cut(s)	114, 131, 204, 281, 316, 379, 515, 548
CviKI_1	RGCY	8 cut(s)	114, 131, 204, 281, 316, 379, 515, 548
DpnI	GATC	5 cut(s)	101, 119, 152, 257, 350
DpnII	GATC	5 cut(s)	99, 117, 150, 255, 348
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco147I	AGGCCT	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	556
Esp3I	CGTCTC	2 cut(s)	164, 258
FaeI	CATG	1 cut(s)	124
FaiI	YATR	6 cut(s)	122, 284, 309, 504, 506, 510
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FatI	CATG	1 cut(s)	120
FauI	CCCGC	1 cut(s)	145
FauNDI	CATATG	1 cut(s)	504
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	1 cut(s)	472
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	2 cut(s)	293, 371
GluI	GCNGC	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	131, 379
HapII	CCGG	4 cut(s)	24, 115, 213, 555
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	2 cut(s)	8, 20
HpaII	CCGG	4 cut(s)	24, 115, 213, 555
HphI	GGTGA	4 cut(s)	202, 404, 461, 482
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	7 cut(s)	13, 193, 226, 237, 401, 411, 425
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	3 cut(s)	121, 232, 347
HpyCH4III	ACNGT	3 cut(s)	60, 446, 536
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	3 cut(s)	178, 334, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	99, 117, 150, 255, 348
LmnI	GCTCC	2 cut(s)	512, 545
Lsp1109I	GCAGC	1 cut(s)	535
LweI	GCATC	6 cut(s)	151, 165, 230, 406, 415, 450
MaeI	CTAG	2 cut(s)	293, 371
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	5 cut(s)	101, 119, 152, 257, 350
MboI	GATC	5 cut(s)	99, 117, 150, 255, 348
MboII	GAAGA	4 cut(s)	136, 256, 262, 479
MflI	RGATCY	1 cut(s)	150
MmeI	TCCRAC	3 cut(s)	36, 379, 403
MseI	TTAA	1 cut(s)	571
MslI	CAYNNNNRTG	1 cut(s)	507
MspI	CCGG	4 cut(s)	24, 115, 213, 555
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeI	CATATG	1 cut(s)	504
NdeII	GATC	5 cut(s)	99, 117, 150, 255, 348
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	514
NmuCI	GTSAC	1 cut(s)	208
PagI	TCATGA	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	8, 20
PflMI	CCANNNNNTGG	1 cut(s)	386
PkrI	GCNGC	1 cut(s)	550
Ple19I	CGATCG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	150
PvuI	CGATCG	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	1 cut(s)	571
SatI	GCNGC	1 cut(s)	549
Sau3AI	GATC	5 cut(s)	99, 117, 150, 255, 348
SetI	ASST	9 cut(s)	92, 111, 206, 298, 341, 399, 523, 544, 550
SfaNI	GCATC	6 cut(s)	151, 165, 230, 406, 415, 450
SmiMI	CAYNNNNRTG	1 cut(s)	507
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	3 cut(s)	138, 432, 525
SspMI	CTAG	2 cut(s)	293, 371
StuI	AGGCCT	1 cut(s)	131
TaaI	ACNGT	3 cut(s)	60, 446, 536
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	351
TfiI	GAWTC	2 cut(s)	8, 20
Tru1I	TTAA	1 cut(s)	571
Tru9I	TTAA	1 cut(s)	571
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	137, 187
TspGWI	ACGGA	2 cut(s)	69, 276
TspRI	CASTG	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	386
XagI	CCTNNNNNAGG	1 cut(s)	556
XspI	CTAG	2 cut(s)	293, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.