Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0014888

Physical Location & Seq

Genomic Coordinates Reverse (-)

14804410 .. 14804985

Gene Structure 576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGGACTCGGACAACGACTCGGGAGGAGCGCACACGAAGAGCGAGCTCTCGCCGCGGGAACAGGACCGATTGCTGCCTATAGCGAACGTGAGCCGGATCATGAAGAAGGCGCTGCCGGCGAACGCTAAGATCTCGAAAGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATAAGCTTCATCACGGGCGAGGCCTCTGACAAGTGTCAGAGGGAGAAGAGGAAGACGATCAACGTCGACGATTTGCTGTGGGCGATGACGACGTTAGGGTTCGAGGAGTACGTGGAGCCTCTGAAGGTTTATTTGCAGAGGTTTAGGGAGATGGAAGGGGAGAAGAGCAGCGTGTCGGCGCGTGACAAGGACGGGAGCGGTGGCGGGAATGGTGGGGTTGGGTACGAGGTCGGAGGTGGGAGCAGTGGCGGAGCTGGGGTATACTGGCAGCAGCAACAGCAGCAGCAGCAGCATCAGGGACACGTGTACGGCGGGAGTGGGTTTCATCAGATGGGTGTGAGTGGAGTTGGGATGGGGAAGAGTGGGCCCGGATCTAACATGGGTAGGCCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

192

Amino Acids

20.55

Weight (kDa)

6.44

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	20 - 89	5.2e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	25 - 89	2.4e-27	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47640
fragaria_vesca	FvH4_3g29360
malus_domestica	MD03G1183400.v1.1 MD11G1200400.v1.1
prunus_persica	Prupe.4G242700_v2.0.a1
pyrus_communis	pycom03g13700 pycom11g17280
rosa_chinensis	RchiOBHm_Chr5g0053731
rosa_laevigata	RLG00000034898
rosa_multiflora	Rmu_sc0001759.1_g000047
rosa_roxburghii	Rroxscaffold_1G00026870
rosa_rugosa	Rorug05G0281800
rosa_samantha	Rh5AG352700 Rh5BG364400 Rh5DG379200
rosa_wichuraiana	Rw5G033320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	378
AccI	GTMKAC	2 cut(s)	246, 441
AccII	CGCG	3 cut(s)	58, 146, 361
AciI	CCGC	7 cut(s)	5, 56, 58, 378, 384, 429, 492
AclWI	GGATC	2 cut(s)	107, 559
AcuI	CTGAAG	1 cut(s)	323
AcvI	CACGTG	1 cut(s)	484
AfaI	GTAC	3 cut(s)	290, 404, 488
AflIII	ACRYGT	2 cut(s)	481, 483
AluBI	AGCT	3 cut(s)	49, 186, 434
AluI	AGCT	3 cut(s)	49, 186, 434
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	107, 559
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	201, 545, 566
ApaI	GGGCCC	1 cut(s)	549
ApeKI	GCWGC	9 cut(s)	76, 115, 348, 448, 451, 460, 463, 466, 469
AspLEI	GCGC	3 cut(s)	34, 115, 361
AspS9I	GGNCC	4 cut(s)	67, 545, 546, 567
AsuC2I	CCSGG	1 cut(s)	549
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	549
BanII	GRGCYC	2 cut(s)	51, 549
BbrPI	CACGTG	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	9 cut(s)	63, 102, 360, 460, 463, 472, 475, 478, 481
BccI	CCATC	3 cut(s)	325, 505, 526
BceAI	ACGGC	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	116
BglII	AGATCT	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	67, 545, 546, 567
BmiI	GGNNCC	2 cut(s)	297, 547
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	1 cut(s)	481
BoxI	GACNNNNGTC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	549
BsaAI	YACGTR	2 cut(s)	292, 484
BsaJI	CCNNGG	1 cut(s)	56
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 423, 453
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	1 cut(s)	537
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	2 cut(s)	42, 299
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	9 cut(s)	63, 102, 360, 460, 463, 472, 475, 478, 481
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	3 cut(s)	58, 146, 361
BshFI	GGCC	3 cut(s)	203, 547, 568
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	97, 119, 549
BslFI	GGGAC	1 cut(s)	492
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	492
BsnI	GGCC	3 cut(s)	203, 547, 568
BsoBI	CYCGRG	1 cut(s)	22
Bsp120I	GGGCCC	1 cut(s)	545
Bsp1286I	GDGCHC	2 cut(s)	51, 549
Bsp143I	GATC	4 cut(s)	99, 132, 237, 551
BspACI	CCGC	7 cut(s)	5, 56, 58, 378, 384, 429, 492
BspANI	GGCC	3 cut(s)	203, 547, 568
BspFNI	CGCG	3 cut(s)	58, 146, 361
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	297, 547
BspPI	GGATC	2 cut(s)	107, 559
BspQI	GCTCTTC	2 cut(s)	35, 338
BsrBI	CCGCTC	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	4 cut(s)	99, 132, 237, 551
BssNAI	GTATAC	1 cut(s)	442
Bst1107I	GTATAC	1 cut(s)	442
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	4 cut(s)	35, 221, 338, 533
BstBAI	YACGTR	2 cut(s)	292, 484
BstC8I	GCNNGC	2 cut(s)	47, 120
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	537
BstFNI	CGCG	3 cut(s)	58, 146, 361
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	3 cut(s)	34, 115, 361
BstKTI	GATC	4 cut(s)	102, 135, 240, 554
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	99, 132, 237, 551
BstMWI	GCNNNNNNNGC	6 cut(s)	55, 119, 457, 460, 466, 469
BstPAI	GACNNNNGTC	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	547
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	549
BstUI	CGCG	3 cut(s)	58, 146, 361
BstV1I	GCAGC	9 cut(s)	63, 102, 360, 460, 463, 472, 475, 478, 481
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	2 cut(s)	132, 551
BstYI	RGATCY	2 cut(s)	132, 551
BstZ17I	GTATAC	1 cut(s)	442
BsuRI	GGCC	3 cut(s)	203, 547, 568
BtgI	CCRYGG	1 cut(s)	56
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	537
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	47, 120
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	3 cut(s)	34, 115, 361
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	4 cut(s)	67, 545, 546, 567
Cfr42I	CCGCGG	1 cut(s)	59
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	289, 403, 487
CviAII	CATG	2 cut(s)	103, 559
CviJI	RGCY	8 cut(s)	49, 96, 186, 203, 298, 434, 547, 568
CviKI_1	RGCY	8 cut(s)	49, 96, 186, 203, 298, 434, 547, 568
CviQI	GTAC	3 cut(s)	289, 403, 487
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	4 cut(s)	101, 134, 239, 553
DpnII	GATC	4 cut(s)	99, 132, 237, 551
Eam1104I	CTCTTC	4 cut(s)	35, 221, 338, 533
EarI	CTCTTC	4 cut(s)	35, 221, 338, 533
EciI	GGCGGA	2 cut(s)	20, 444
Ecl136II	GAGCTC	1 cut(s)	49
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	2 cut(s)	51, 549
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	323
Eco72I	CACGTG	1 cut(s)	484
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	49
EcoT38I	GRGCYC	2 cut(s)	51, 549
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	2 cut(s)	106, 562
FaiI	YATR	5 cut(s)	83, 104, 182, 442, 560
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	2 cut(s)	102, 558
FauI	CCCGC	3 cut(s)	51, 377, 485
FblI	GTMKAC	2 cut(s)	246, 441
FokI	GGATG	1 cut(s)	544
FriOI	GRGCYC	2 cut(s)	51, 549
GlaI	GCGC	3 cut(s)	33, 114, 360
GsaI	CCCAGC	1 cut(s)	438
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	203, 547, 568
HapII	CCGG	3 cut(s)	97, 119, 549
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	3 cut(s)	34, 115, 361
Hin1II	CATG	2 cut(s)	106, 562
Hin6I	GCGC	3 cut(s)	32, 113, 359
HinP1I	GCGC	3 cut(s)	32, 113, 359
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	2 cut(s)	8, 20
HpaII	CCGG	3 cut(s)	97, 119, 549
Hpy166II	GTNNAC	3 cut(s)	247, 442, 487
Hpy188I	TCNGA	7 cut(s)	13, 175, 208, 219, 303, 413, 510
Hpy188III	TCNNGA	3 cut(s)	24, 103, 136
Hpy8I	GTNNAC	3 cut(s)	247, 442, 487
Hpy99I	CGWCG	3 cut(s)	248, 251, 274
HpyAV	CCTTC	4 cut(s)	103, 142, 298, 329
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	5 cut(s)	90, 243, 272, 291, 483
HpyCH4V	TGCA	2 cut(s)	160, 316
HpyF10VI	GCNNNNNNNGC	6 cut(s)	55, 119, 457, 460, 466, 469
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	5 cut(s)	90, 243, 272, 291, 483
Hsp92II	CATG	2 cut(s)	106, 562
HspAI	GCGC	3 cut(s)	32, 113, 359
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
KspI	CCGCGG	1 cut(s)	59
Kzo9I	GATC	4 cut(s)	99, 132, 237, 551
LguI	GCTCTTC	2 cut(s)	35, 338
LmnI	GCTCC	5 cut(s)	29, 295, 375, 420, 431
LpnPI	CCDG	8 cut(s)	50, 110, 132, 146, 420, 430, 461, 562
Lsp1109I	GCAGC	9 cut(s)	63, 102, 360, 460, 463, 472, 475, 478, 481
LweI	GCATC	1 cut(s)	481
MaeII	ACGT	5 cut(s)	90, 243, 272, 291, 483
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	4 cut(s)	101, 134, 239, 553
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	4 cut(s)	99, 132, 237, 551
MboII	GAAGA	6 cut(s)	52, 118, 238, 244, 355, 550
MflI	RGATCY	2 cut(s)	132, 551
MhlI	GDGCHC	2 cut(s)	51, 549
MlyI	GAGTC	2 cut(s)	2, 14
MmeI	TCCRAC	2 cut(s)	153, 391
MroNI	GCCGGC	1 cut(s)	118
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	3 cut(s)	97, 119, 549
MspR9I	CCNGG	1 cut(s)	549
MvnI	CGCG	3 cut(s)	58, 146, 361
MwoI	GCNNNNNNNGC	6 cut(s)	55, 119, 457, 460, 466, 469
NaeI	GCCGGC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	549
NdeII	GATC	4 cut(s)	99, 132, 237, 551
NgoMIV	GCCGGC	1 cut(s)	118
NlaIII	CATG	2 cut(s)	106, 562
NlaIV	GGNNCC	2 cut(s)	297, 547
NmuCI	GTSAC	1 cut(s)	362
PagI	TCATGA	1 cut(s)	102
PceI	AGGCCT	1 cut(s)	203
PciSI	GCTCTTC	2 cut(s)	35, 338
PcsI	WCGNNNNNNNCGW	2 cut(s)	143, 288
PdiI	GCCGGC	1 cut(s)	120
PleI	GAGTC	2 cut(s)	2, 14
PmaCI	CACGTG	1 cut(s)	484
PmlI	CACGTG	1 cut(s)	484
PpsI	GAGTC	2 cut(s)	2, 14
Ppu21I	YACGTR	2 cut(s)	292, 484
PshAI	GACNNNNGTC	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	51
PspCI	CACGTG	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	297, 547
PspOMI	GGGCCC	1 cut(s)	545
PspPI	GGNCC	4 cut(s)	67, 545, 546, 567
PsuI	RGATCY	2 cut(s)	132, 551
RsaI	GTAC	3 cut(s)	290, 404, 488
RsaNI	GTAC	3 cut(s)	289, 403, 487
SacI	GAGCTC	1 cut(s)	51
SacII	CCGCGG	1 cut(s)	59
SalI	GTCGAC	1 cut(s)	245
SapI	GCTCTTC	2 cut(s)	35, 338
Sau3AI	GATC	4 cut(s)	99, 132, 237, 551
Sau96I	GGNCC	4 cut(s)	67, 545, 546, 567
SchI	GAGTC	2 cut(s)	2, 14
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	2 cut(s)	51, 549
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	81
Sfr303I	CCGCGG	1 cut(s)	59
SgrBI	CCGCGG	1 cut(s)	59
SgrDI	CGTCGACG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	67
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	7 cut(s)	5, 56, 58, 378, 384, 429, 492
SstI	GAGCTC	1 cut(s)	51
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	547
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	5 cut(s)	93, 246, 275, 294, 486
TaqI	TCGA	3 cut(s)	137, 246, 282
TaqII	GACCGA	1 cut(s)	84
TauI	GCSGC	1 cut(s)	58
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	9 cut(s)	76, 115, 348, 448, 451, 460, 463, 466, 469
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	4 cut(s)	119, 169, 178, 494
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	67
XmiI	GTMKAC	2 cut(s)	246, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.