Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014888

Physical Location & Seq

Genomic Coordinates Reverse (-)

58342875 .. 58344303

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG352700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGGACTCGGACAACGACTCGGGAGGCGGGCACAACAGCCCCGGAGGTTATACGAAGAGCGAGCTGTCACCTCGGGAACAGGACCGGCTGTTACCAATTGCCAACGTCAGCAGGATCATGAAGAAGGCGCTGCCGGCCAACGCCAAGATCTCCAAGGACGCCAAGGAGACCGTGCAGGAGTGCGTCTCCGAGTTCATAAGCTTCATCACCGGCGAGGCCTCCGACAAGTGTCAGCGCGAGAAGCGGAAGACCATCAACGGCGACGATTTGCTCTGGGCCATGACCACCCTCGGCTTCGAGGAGTACGTCGAGCCGCTCAAGGTGTACTTGCAGCGCTTTAGGGAGATGGAGGGCGAGAAGAGTAGCATGGCCGCGCGTGATAAGGACCCCAGCGGCGGGGTTGTTGTGTTTGAGGGCGCTGGGAGCGGCGGCGGCGGCGGTGGAGGAGGGGGAGGAGTCTATTGGCAGCAGCCGCAGCATCAGCAGCAGCCGCAGCAGCCGCACCAGGGACACGTGTACGGCGGTGGCGGGTTTCATCAGATGGGGGTTGGGATTGGAAAGGGTGGGCCCGGGTCCAACATGGGTAGGCCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

199

Amino Acids

21.23

Weight (kDa)

6.52

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	26 - 95	5.7e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	31 - 95	2.2e-27	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47640
fragaria_vesca	FvH4_3g29360
malus_domestica	MD03G1183400.v1.1 MD11G1200400.v1.1
prunus_persica	Prupe.4G242700_v2.0.a1
pyrus_communis	pycom03g13700 pycom11g17280
rosa_chinensis	RchiOBHm_Chr5g0053731
rosa_laevigata	RLG00000034898
rosa_multiflora	Rmu_sc0001759.1_g000047
rosa_roxburghii	Rroxscaffold_1G00026870
rosa_rugosa	Rorug05G0281800
rosa_samantha	Rh5AG352700 Rh5BG364400 Rh5DG379200
rosa_wichuraiana	Rw5G033320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	319, 429
AccII	CGCG	3 cut(s)	240, 377, 379
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	2 cut(s)	138, 372
AcvI	CACGTG	1 cut(s)	517
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	3 cut(s)	308, 329, 521
AfeI	AGCGCT	1 cut(s)	338
AfiI	CCNNNNNNNGG	3 cut(s)	398, 399, 509
AflIII	ACRYGT	2 cut(s)	514, 516
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	2 cut(s)	67, 204
AluI	AGCT	2 cut(s)	67, 204
Alw26I	GTCTC	2 cut(s)	164, 193
AlwI	GGATC	1 cut(s)	125
Ama87I	CYCGRG	3 cut(s)	22, 75, 572
Aor51HI	AGCGCT	1 cut(s)	338
AoxI	GGCC	6 cut(s)	138, 219, 279, 372, 569, 590
ApaI	GGGCCC	1 cut(s)	573
ApeKI	GCWGC	9 cut(s)	133, 334, 469, 472, 478, 487, 490, 496, 499
AspLEI	GCGC	5 cut(s)	133, 240, 339, 379, 422
AspS9I	GGNCC	7 cut(s)	85, 279, 388, 569, 570, 576, 591
AsuC2I	CCSGG	3 cut(s)	45, 573, 574
AsuHPI	GGTGA	2 cut(s)	63, 202
AvaI	CYCGRG	3 cut(s)	22, 75, 572
AvaII	GGWCC	3 cut(s)	85, 388, 576
BaeGI	GKGCMC	2 cut(s)	36, 573
BanII	GRGCYC	1 cut(s)	573
BbrPI	CACGTG	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	9 cut(s)	120, 346, 481, 484, 490, 499, 502, 508, 511
BccI	CCATC	3 cut(s)	263, 343, 538
BceAI	ACGGC	2 cut(s)	277, 538
BciT130I	CCWGG	1 cut(s)	509
BcnI	CCSGG	3 cut(s)	45, 573, 574
BcoDI	GTCTC	2 cut(s)	164, 193
BfoI	RGCGCY	3 cut(s)	134, 340, 423
BglII	AGATCT	1 cut(s)	150
Bme1390I	CCNGG	4 cut(s)	45, 509, 573, 574
Bme18I	GGWCC	3 cut(s)	85, 388, 576
BmeT110I	CYCGRG	3 cut(s)	22, 75, 572
BmgT120I	GGNCC	7 cut(s)	85, 279, 388, 569, 570, 576, 591
BmiI	GGNNCC	3 cut(s)	390, 571, 577
BmrFI	CCNGG	4 cut(s)	45, 509, 573, 574
BmsI	GCATC	1 cut(s)	490
BoxI	GACNNNNGTC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	3 cut(s)	45, 573, 574
BsaAI	YACGTR	1 cut(s)	517
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	7 cut(s)	43, 74, 156, 165, 292, 508, 572
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 399, 509
Bse118I	RCCGGY	3 cut(s)	87, 136, 212
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	7 cut(s)	43, 74, 156, 165, 292, 508, 572
BseLI	CCNNNNNNNGG	3 cut(s)	398, 399, 509
BseRI	GAGGAG	3 cut(s)	317, 462, 471
BseSI	GKGCMC	2 cut(s)	36, 573
BseXI	GCAGC	9 cut(s)	120, 346, 481, 484, 490, 499, 502, 508, 511
BseYI	CCCAGC	2 cut(s)	392, 422
BsgI	GTGCAG	1 cut(s)	197
Bsh1236I	CGCG	3 cut(s)	240, 377, 379
BshFI	GGCC	6 cut(s)	140, 221, 281, 374, 571, 592
BsiHKCI	CYCGRG	3 cut(s)	22, 75, 572
BsiSI	CCGG	5 cut(s)	45, 88, 137, 213, 573
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	3 cut(s)	398, 399, 509
BsmAI	GTCTC	2 cut(s)	164, 193
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	525
BsnI	GGCC	6 cut(s)	140, 221, 281, 374, 571, 592
Bso31I	GGTCTC	1 cut(s)	164
BsoBI	CYCGRG	3 cut(s)	22, 75, 572
Bsp120I	GGGCCC	1 cut(s)	569
Bsp1286I	GDGCHC	2 cut(s)	36, 573
Bsp143I	GATC	2 cut(s)	117, 150
BspANI	GGCC	6 cut(s)	140, 221, 281, 374, 571, 592
BspFNI	CGCG	3 cut(s)	240, 377, 379
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	390, 571, 577
BspPI	GGATC	1 cut(s)	125
BspQI	GCTCTTC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	164
BsrBI	CCGCTC	2 cut(s)	319, 429
BsrFI	RCCGGY	3 cut(s)	87, 136, 212
BssAI	RCCGGY	3 cut(s)	87, 136, 212
BssECI	CCNNGG	7 cut(s)	43, 74, 156, 165, 292, 508, 572
BssMI	GATC	2 cut(s)	117, 150
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	2 cut(s)	156, 165
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	2 cut(s)	53, 356
BstACI	GRCGYC	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	517
BstC8I	GCNNGC	3 cut(s)	32, 65, 138
BstFNI	CGCG	3 cut(s)	240, 377, 379
BstH2I	RGCGCY	3 cut(s)	134, 340, 423
BstHHI	GCGC	5 cut(s)	133, 240, 339, 379, 422
BstKTI	GATC	2 cut(s)	120, 153
BstMAI	GTCTC	2 cut(s)	164, 193
BstMBI	GATC	2 cut(s)	117, 150
BstNI	CCWGG	1 cut(s)	509
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSCI	CCNGG	4 cut(s)	43, 507, 571, 572
BstSLI	GKGCMC	2 cut(s)	36, 573
BstUI	CGCG	3 cut(s)	240, 377, 379
BstV1I	GCAGC	9 cut(s)	120, 346, 481, 484, 490, 499, 502, 508, 511
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BsuRI	GGCC	6 cut(s)	140, 221, 281, 374, 571, 592
Cac8I	GCNNGC	3 cut(s)	32, 65, 138
CciI	TCATGA	1 cut(s)	120
CfoI	GCGC	5 cut(s)	133, 240, 339, 379, 422
Cfr10I	RCCGGY	3 cut(s)	87, 136, 212
Cfr13I	GGNCC	7 cut(s)	85, 279, 388, 569, 570, 576, 591
Cfr9I	CCCGGG	1 cut(s)	572
CseI	GACGC	2 cut(s)	170, 175
Csp6I	GTAC	3 cut(s)	307, 328, 520
CviAII	CATG	4 cut(s)	121, 283, 370, 583
CviQI	GTAC	3 cut(s)	307, 328, 520
DpnI	GATC	2 cut(s)	119, 152
DpnII	GATC	2 cut(s)	117, 150
EaeI	YGGCCR	2 cut(s)	138, 372
Eam1104I	CTCTTC	2 cut(s)	53, 356
EarI	CTCTTC	2 cut(s)	53, 356
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	156, 165
Eco147I	AGGCCT	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	573
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	3 cut(s)	85, 388, 576
Eco47III	AGCGCT	1 cut(s)	338
Eco72I	CACGTG	1 cut(s)	517
Eco88I	CYCGRG	3 cut(s)	22, 75, 572
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	2 cut(s)	156, 165
EcoT38I	GRGCYC	1 cut(s)	573
ErhI	CCWWGG	2 cut(s)	156, 165
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	4 cut(s)	124, 286, 373, 586
FaiI	YATR	6 cut(s)	54, 122, 200, 284, 371, 584
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	4 cut(s)	120, 282, 369, 582
FauI	CCCGC	3 cut(s)	23, 392, 524
FriOI	GRGCYC	1 cut(s)	573
GlaI	GCGC	5 cut(s)	132, 239, 338, 378, 421
GsaI	CCCAGC	2 cut(s)	396, 426
HaeII	RGCGCY	3 cut(s)	134, 340, 423
HaeIII	GGCC	6 cut(s)	140, 221, 281, 374, 571, 592
HapII	CCGG	5 cut(s)	45, 88, 137, 213, 573
HgaI	GACGC	2 cut(s)	170, 175
HhaI	GCGC	5 cut(s)	133, 240, 339, 379, 422
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	124, 286, 373, 586
Hin6I	GCGC	5 cut(s)	131, 238, 337, 377, 420
HinP1I	GCGC	5 cut(s)	131, 238, 337, 377, 420
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	3 cut(s)	8, 20, 459
HpaII	CCGG	5 cut(s)	45, 88, 137, 213, 573
HphI	GGTGA	2 cut(s)	63, 202
Hpy166II	GTNNAC	2 cut(s)	328, 520
Hpy188I	TCNGA	4 cut(s)	13, 193, 226, 543
Hpy188III	TCNNGA	3 cut(s)	24, 77, 121
Hpy8I	GTNNAC	2 cut(s)	328, 520
Hpy99I	CGWCG	2 cut(s)	269, 314
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	3 cut(s)	108, 309, 516
HpyCH4V	TGCA	2 cut(s)	178, 334
HpySE526I	ACGT	3 cut(s)	108, 309, 516
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	124, 286, 373, 586
HspAI	GCGC	5 cut(s)	131, 238, 337, 377, 420
KroI	GCCGGC	1 cut(s)	136
KroNI	GCCGGC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	117, 150
LguI	GCTCTTC	1 cut(s)	53
LmnI	GCTCC	1 cut(s)	426
Lsp1109I	GCAGC	9 cut(s)	120, 346, 481, 484, 490, 499, 502, 508, 511
LweI	GCATC	1 cut(s)	490
MaeII	ACGT	3 cut(s)	108, 309, 516
MaeIII	GTNAC	2 cut(s)	69, 93
MalI	GATC	2 cut(s)	119, 152
MbiI	CCGCTC	2 cut(s)	319, 429
MboI	GATC	2 cut(s)	117, 150
MboII	GAAGA	4 cut(s)	70, 136, 262, 373
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	36, 573
MluCI	AATT	1 cut(s)	99
MlyI	GAGTC	3 cut(s)	2, 14, 468
MmeI	TCCRAC	1 cut(s)	249
MroNI	GCCGGC	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	5 cut(s)	45, 88, 137, 213, 573
MspR9I	CCNGG	4 cut(s)	45, 509, 573, 574
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	3 cut(s)	240, 377, 379
NaeI	GCCGGC	1 cut(s)	138
NciI	CCSGG	3 cut(s)	45, 573, 574
NdeII	GATC	2 cut(s)	117, 150
NgoMIV	GCCGGC	1 cut(s)	136
NlaIII	CATG	4 cut(s)	124, 286, 373, 586
NlaIV	GGNNCC	3 cut(s)	390, 571, 577
NmeAIII	GCCGAG	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	69
PagI	TCATGA	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	221
PciSI	GCTCTTC	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PdiI	GCCGGC	1 cut(s)	138
PleI	GAGTC	3 cut(s)	2, 14, 467
PmaCI	CACGTG	1 cut(s)	517
PmlI	CACGTG	1 cut(s)	517
PpsI	GAGTC	3 cut(s)	2, 14, 467
Ppu21I	YACGTR	1 cut(s)	517
PpuMI	RGGWCCY	1 cut(s)	388
PshAI	GACNNNNGTC	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	507
PspCI	CACGTG	1 cut(s)	517
PspFI	CCCAGC	2 cut(s)	392, 422
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	3 cut(s)	390, 571, 577
PspOMI	GGGCCC	1 cut(s)	569
PspPI	GGNCC	7 cut(s)	85, 279, 388, 569, 570, 576, 591
PspPPI	RGGWCCY	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	3 cut(s)	308, 329, 521
RsaNI	GTAC	3 cut(s)	307, 328, 520
SapI	GCTCTTC	1 cut(s)	53
Sau3AI	GATC	2 cut(s)	117, 150
Sau96I	GGNCC	7 cut(s)	85, 279, 388, 569, 570, 576, 591
SchI	GAGTC	3 cut(s)	2, 14, 468
ScrFI	CCNGG	4 cut(s)	45, 509, 573, 574
SduI	GDGCHC	2 cut(s)	36, 573
SetI	ASST	8 cut(s)	52, 69, 76, 111, 206, 312, 327, 519
SfaNI	GCATC	1 cut(s)	490
SgrAI	CRCCGGYG	1 cut(s)	212
SinI	GGWCC	3 cut(s)	85, 388, 576
SmaI	CCCGGG	1 cut(s)	574
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	1 cut(s)	99
SseBI	AGGCCT	1 cut(s)	221
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	4 cut(s)	43, 507, 571, 572
StyI	CCWWGG	2 cut(s)	156, 165
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	3 cut(s)	111, 312, 519
TaqI	TCGA	2 cut(s)	300, 312
TasI	AATT	1 cut(s)	99
TatI	WGTACW	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	9 cut(s)	133, 334, 469, 472, 478, 487, 490, 496, 499
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	4 cut(s)	137, 187, 196, 527
TspMI	CCCGGG	1 cut(s)	572
VpaK11BI	GGWCC	3 cut(s)	85, 388, 576
XmaI	CCCGGG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.