Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014888

Physical Location & Seq

Genomic Coordinates Reverse (-)

28876837 .. 28877409

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1200400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCGGACTCGGACAACGACTCGGGAGGAGCGCACGGGAAGAGCGAGCTCTCGCCGCGGGAACAGGACCGGTTGCTGCCGATAGCGAACGTGAGCCGGATCATGAAGAAGGCGCTGCCGGCGAATGCGAAGATCTCGAAAGACGCGAAGGAGACGGTGCAGGAATGCGTGTCGGAGTTCATAAGCTTCATTACCGGGGAGGCCTCCGACAAGTGTCAGAGGGAGAAGAGGAAGACGATCAACGGCGACGATTTGCTCTGGGCGATGACGACGTTAGGGTTCGAGGAGTACGTGGAGCCTCTGAAGGTTTACTTGCAGAGGTTTAGGGAGATGGAAGGGGAGAAGAGCAGCGTGGCGGCGCGTGACAAGGACGGGAGCGGTGGCGGAATCGGTGGGGTTGGGTATGAGCGGGGTGGTGGTGGTGGTGGTGGGAGTAGTGGTGGAGCTGGGGTATATTGGCAGCAGCAGCATCAGGGCCACGTGTACGGAGGGAGTGGGTTCCATCAGATGGGTGTGAGTGGAGTTGGAATGGGGAAGAGTGGGCCTGGATCCAACATGGGTAGGCCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

191

Amino Acids

20.09

Weight (kDa)

6.91

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	20 - 89	5.6e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	25 - 89	2e-27	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014888)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47640
fragaria_vesca	FvH4_3g29360
malus_domestica	MD03G1183400.v1.1 MD11G1200400.v1.1
prunus_persica	Prupe.4G242700_v2.0.a1
pyrus_communis	pycom03g13700 pycom11g17280
rosa_chinensis	RchiOBHm_Chr5g0053731
rosa_laevigata	RLG00000034898
rosa_multiflora	Rmu_sc0001759.1_g000047
rosa_roxburghii	Rroxscaffold_1G00026870
rosa_rugosa	Rorug05G0281800
rosa_samantha	Rh5AG352700 Rh5BG364400 Rh5DG379200
rosa_wichuraiana	Rw5G033320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	508
AccBSI	CCGCTC	2 cut(s)	378, 409
AccII	CGCG	3 cut(s)	58, 146, 361
AciI	CCGC	7 cut(s)	5, 56, 58, 356, 378, 384, 409
AclWI	GGATC	3 cut(s)	107, 543, 556
AcuI	CTGAAG	1 cut(s)	323
AcvI	CACGTG	1 cut(s)	481
AfaI	GTAC	2 cut(s)	290, 485
AfiI	CCNNNNNNNGG	1 cut(s)	508
AflIII	ACRYGT	1 cut(s)	480
AgeI	ACCGGT	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	3 cut(s)	49, 186, 446
AluI	AGCT	3 cut(s)	49, 186, 446
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	3 cut(s)	107, 543, 556
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	4 cut(s)	201, 475, 542, 563
ApeKI	GCWGC	6 cut(s)	76, 115, 348, 460, 463, 466
AsiGI	ACCGGT	1 cut(s)	69
AspLEI	GCGC	3 cut(s)	34, 115, 361
AspS9I	GGNCC	4 cut(s)	67, 475, 542, 564
AsuC2I	CCSGG	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	51
BbrPI	CACGTG	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	6 cut(s)	63, 102, 360, 472, 475, 478
BccI	CCATC	3 cut(s)	325, 502, 510
BceAI	ACGGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	116
BglII	AGATCT	1 cut(s)	132
BisI	GCNGC	8 cut(s)	56, 77, 116, 349, 357, 461, 464, 467
BlsI	GCNGC	8 cut(s)	57, 78, 117, 350, 358, 462, 465, 468
Bme1390I	CCNGG	2 cut(s)	196, 546
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	67, 475, 542, 564
BmiI	GGNNCC	3 cut(s)	297, 500, 550
BmrFI	CCNGG	2 cut(s)	196, 546
BmsI	GCATC	1 cut(s)	478
BoxI	GACNNNNGTC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	196
BsaAI	YACGTR	2 cut(s)	292, 481
BsaJI	CCNNGG	2 cut(s)	56, 195
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	4 cut(s)	424, 435, 454, 465
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse118I	RCCGGY	2 cut(s)	69, 118
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	2 cut(s)	56, 195
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseRI	GAGGAG	2 cut(s)	42, 299
BseXI	GCAGC	6 cut(s)	63, 102, 360, 472, 475, 478
BseYI	CCCAGC	1 cut(s)	446
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	3 cut(s)	58, 146, 361
BshFI	GGCC	4 cut(s)	203, 477, 544, 565
BshTI	ACCGGT	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	4 cut(s)	70, 97, 119, 195
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsmI	GAATGC	2 cut(s)	130, 170
BsnI	GGCC	4 cut(s)	203, 477, 544, 565
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	99, 132, 237, 548
BspACI	CCGC	7 cut(s)	5, 56, 58, 356, 378, 384, 409
BspANI	GGCC	4 cut(s)	203, 477, 544, 565
BspFNI	CGCG	3 cut(s)	58, 146, 361
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	297, 500, 550
BspPI	GGATC	3 cut(s)	107, 543, 556
BspQI	GCTCTTC	2 cut(s)	35, 338
BsrBI	CCGCTC	2 cut(s)	378, 409
BsrFI	RCCGGY	2 cut(s)	69, 118
BssAI	RCCGGY	2 cut(s)	69, 118
BssECI	CCNNGG	2 cut(s)	56, 195
BssMI	GATC	4 cut(s)	99, 132, 237, 548
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	4 cut(s)	35, 221, 338, 530
BstBAI	YACGTR	2 cut(s)	292, 481
BstC8I	GCNNGC	2 cut(s)	47, 120
BstDSI	CCRYGG	1 cut(s)	56
BstFNI	CGCG	3 cut(s)	58, 146, 361
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	3 cut(s)	34, 115, 361
BstKTI	GATC	4 cut(s)	102, 135, 240, 551
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	99, 132, 237, 548
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 119, 466
BstNI	CCWGG	1 cut(s)	546
BstPAI	GACNNNNGTC	1 cut(s)	213
BstSCI	CCNGG	2 cut(s)	194, 544
BstUI	CGCG	3 cut(s)	58, 146, 361
BstV1I	GCAGC	6 cut(s)	63, 102, 360, 472, 475, 478
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	2 cut(s)	132, 548
BstYI	RGATCY	2 cut(s)	132, 548
BsuRI	GGCC	4 cut(s)	203, 477, 544, 565
BtgI	CCRYGG	1 cut(s)	56
BtgZI	GCGATG	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	47, 120
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	3 cut(s)	34, 115, 361
Cfr10I	RCCGGY	2 cut(s)	69, 118
Cfr13I	GGNCC	4 cut(s)	67, 475, 542, 564
Cfr42I	CCGCGG	1 cut(s)	59
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	289, 484
CspAI	ACCGGT	1 cut(s)	69
CviAII	CATG	2 cut(s)	103, 556
CviJI	RGCY	9 cut(s)	49, 96, 186, 203, 298, 446, 477, 544, 565
CviKI_1	RGCY	9 cut(s)	49, 96, 186, 203, 298, 446, 477, 544, 565
CviQI	GTAC	2 cut(s)	289, 484
DpnI	GATC	4 cut(s)	101, 134, 239, 550
DpnII	GATC	4 cut(s)	99, 132, 237, 548
Eam1104I	CTCTTC	4 cut(s)	35, 221, 338, 530
EarI	CTCTTC	4 cut(s)	35, 221, 338, 530
EciI	GGCGGA	2 cut(s)	20, 399
Ecl136II	GAGCTC	1 cut(s)	49
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	323
Eco72I	CACGTG	1 cut(s)	481
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	2 cut(s)	106, 559
FaiI	YATR	5 cut(s)	104, 182, 405, 454, 557
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	2 cut(s)	102, 555
FauI	CCCGC	2 cut(s)	51, 402
Fnu4HI	GCNGC	8 cut(s)	56, 77, 116, 349, 357, 461, 464, 467
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	8 cut(s)	56, 77, 116, 349, 357, 461, 464, 467
GlaI	GCGC	3 cut(s)	33, 114, 360
GluI	GCNGC	8 cut(s)	56, 77, 116, 349, 357, 461, 464, 467
GsaI	CCCAGC	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	4 cut(s)	203, 477, 544, 565
HapII	CCGG	4 cut(s)	70, 97, 119, 195
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	3 cut(s)	34, 115, 361
Hin1II	CATG	2 cut(s)	106, 559
Hin6I	GCGC	3 cut(s)	32, 113, 359
HinP1I	GCGC	3 cut(s)	32, 113, 359
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	3 cut(s)	8, 20, 387
HpaII	CCGG	4 cut(s)	70, 97, 119, 195
Hpy166II	GTNNAC	2 cut(s)	310, 484
Hpy188I	TCNGA	6 cut(s)	13, 175, 208, 219, 303, 507
Hpy188III	TCNNGA	3 cut(s)	24, 103, 136
Hpy8I	GTNNAC	2 cut(s)	310, 484
Hpy99I	CGWCG	2 cut(s)	251, 274
HpyAV	CCTTC	4 cut(s)	103, 142, 298, 329
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	4 cut(s)	90, 272, 291, 480
HpyCH4V	TGCA	2 cut(s)	160, 316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 119, 466
HpySE526I	ACGT	4 cut(s)	90, 272, 291, 480
Hsp92II	CATG	2 cut(s)	106, 559
HspAI	GCGC	3 cut(s)	32, 113, 359
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
KspI	CCGCGG	1 cut(s)	59
Kzo9I	GATC	4 cut(s)	99, 132, 237, 548
LguI	GCTCTTC	2 cut(s)	35, 338
LmnI	GCTCC	4 cut(s)	29, 295, 375, 443
Lsp1109I	GCAGC	6 cut(s)	63, 102, 360, 472, 475, 478
LweI	GCATC	1 cut(s)	478
MaeII	ACGT	4 cut(s)	90, 272, 291, 480
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	4 cut(s)	101, 134, 239, 550
MbiI	CCGCTC	2 cut(s)	378, 409
MboI	GATC	4 cut(s)	99, 132, 237, 548
MboII	GAAGA	7 cut(s)	52, 118, 142, 238, 244, 355, 547
MflI	RGATCY	2 cut(s)	132, 548
MhlI	GDGCHC	1 cut(s)	51
MlyI	GAGTC	2 cut(s)	2, 14
MmeI	TCCRAC	3 cut(s)	153, 231, 505
MnlI	CCTC	9 cut(s)	20, 193, 213, 214, 222, 277, 309, 312, 482
MroNI	GCCGGC	1 cut(s)	118
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	4 cut(s)	70, 97, 119, 195
MspR9I	CCNGG	2 cut(s)	196, 546
Mva1269I	GAATGC	2 cut(s)	130, 170
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	3 cut(s)	58, 146, 361
MwoI	GCNNNNNNNGC	3 cut(s)	55, 119, 466
NaeI	GCCGGC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	4 cut(s)	99, 132, 237, 548
NgoMIV	GCCGGC	1 cut(s)	118
NlaIII	CATG	2 cut(s)	106, 559
NlaIV	GGNNCC	3 cut(s)	297, 500, 550
NmuCI	GTSAC	1 cut(s)	362
PagI	TCATGA	1 cut(s)	102
PceI	AGGCCT	1 cut(s)	203
PciSI	GCTCTTC	2 cut(s)	35, 338
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 143, 288
PctI	GAATGC	2 cut(s)	130, 170
PdiI	GCCGGC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	387
PflMI	CCANNNNNTGG	1 cut(s)	508
PinAI	ACCGGT	1 cut(s)	69
PkrI	GCNGC	8 cut(s)	57, 78, 117, 350, 358, 462, 465, 468
PleI	GAGTC	2 cut(s)	2, 14
PmaCI	CACGTG	1 cut(s)	481
PmlI	CACGTG	1 cut(s)	481
PpsI	GAGTC	2 cut(s)	2, 14
Ppu21I	YACGTR	2 cut(s)	292, 481
PshAI	GACNNNNGTC	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	544
PspCI	CACGTG	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	3 cut(s)	297, 500, 550
PspPI	GGNCC	4 cut(s)	67, 475, 542, 564
PsuI	RGATCY	2 cut(s)	132, 548
RsaI	GTAC	2 cut(s)	290, 485
RsaNI	GTAC	2 cut(s)	289, 484
SacI	GAGCTC	1 cut(s)	51
SacII	CCGCGG	1 cut(s)	59
SapI	GCTCTTC	2 cut(s)	35, 338
SatI	GCNGC	8 cut(s)	56, 77, 116, 349, 357, 461, 464, 467
Sau3AI	GATC	4 cut(s)	99, 132, 237, 548
Sau96I	GGNCC	4 cut(s)	67, 475, 542, 564
SchI	GAGTC	2 cut(s)	2, 14
ScrFI	CCNGG	2 cut(s)	196, 546
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	9 cut(s)	51, 93, 188, 275, 294, 309, 323, 448, 483
SfaNI	GCATC	1 cut(s)	478
Sfr303I	CCGCGG	1 cut(s)	59
SgrBI	CCGCGG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	67
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	7 cut(s)	5, 56, 58, 356, 378, 384, 409
SstI	GAGCTC	1 cut(s)	51
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	194, 544
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	4 cut(s)	93, 275, 294, 483
TaqI	TCGA	2 cut(s)	137, 282
TauI	GCSGC	2 cut(s)	58, 359
TfiI	GAWTC	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	6 cut(s)	76, 115, 348, 460, 463, 466
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	3 cut(s)	119, 169, 178
TspGWI	ACGGA	1 cut(s)	501
Van91I	CCANNNNNTGG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.