Rorug05G0281800

Nuclear transcription factor Y subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0014888
Physical Location & Seq
Reverse (-)
32198126 .. 32202209
4084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0281800.1

Sequence Viewer

Length: 3264 bp
ATGGAGAGAACTTGGTTCTTCCTGGTATACTGCTTTTCTATAGCGGTAGCAGCACATACCAATAGTAAACTCACCACAGACCAGTCTGCTCTTCTTGCTCTCAAAGCCCGTGTCACGAGTGATCCTAACATGATCTTGACCAACTGGTCTACCAACACCCCTACTTGCACTTGGGTTGGCGTTACTTGTGGCGCAAACCACTTCAGAGTTGCAGTCTTGAACCTCTCTTACATGGGACTCACAGGCACTATTCCTCCGGATCTTGGCAACCTCTCATTTCTTGTTGAGCTGCGTTTCACAAATAACAGTTTTCATGGTCACTTGCCTGAAGAATTGGCTCGTTTGCACCAGTTAAAGTTGATTGGCTTAGCATACAACAGCTTTAGTGGAGTCATTCCATCATGGTTCGGGTCCTTGTCCAAACTTCAAACGTTCAATTTGACCGGTAATCAGTTTTCAGGTTCCATACCCTCTGCCATTTTCAACTTATCTGCACTGCAAGTCATTAATTTGAGCCATAACCAACTATCAGGTAGCATACCAAGAGAAATTGGAAACCTAACCATGCTGAAGATGATATTTCTTGATGATAATAAGTTTACAGAAATTCCAAACGAGATTAGCACTTTGAATCAGCTCGAGAAGTTATATGTCCAGCTCAATTCCCTAATGGGGCATGTTCCTATAGCTATCTTCAACATATCTTCTTTGACTACTTTGACTTTTTATGGAAACAACTTGAGCGGTAGTCTTTCAGATAATATATGCCAACATCTTCCTAGCATTCAAGTGTTGGATTTTTCTTACAACCAGTTTCATGGTCCACTTCCATCCAAATGTTGGCAATGCAAACGACTTCTTCAGTTAGGATTGTCGAATAACAATTTCAGTGGAAGTACTATTCCACATGAGATTGGCCAGCTTCCATATTTGGAGGAATTGTCCCTCGGTATTAATAATCTCAAAGGGCTGATTCCATCCTCAATCTTCAATATGTCCACAATAACGAAGATATCGCTTAGCAACAATCAGCTCTCAGGTAACCTCCCAGCAAATATAGGTCATAGGATTCCAATCCTTCAAGAGCTATACCTAGGAATAAATAAACTTAGCGGAGTAATCCCCAAATCCATCTCCAATGTTTCTAAGCTCACGGATCTAGACCTAGACCGTAACTTTTTTTCTGGCTTTATTCCAAGCACACTTTGTGTCTTAACGAACCTTGAACAACTTAAGTTATTCCATAATAACTTGACCATTGATAGTTCGACTCCAGAAGTAAATATTCTCTCTTGTTTGGCAAATCTTAAGAATTTAAAGGAATTAGCCTTCTCAACCAATCCATTAAATGTCAGGCTTCCAGTTTCCTTTAAGAATCTCTCTACATCACTCCAATATATTTATTTAAGCAATTGCAACATGAGAGGTAACATCCTCAATGATATAGGCAACTTGAGCAGCTTGATAGTCTTGAACTTGGCAGAAAATCAATTGAGTGGATTGATTCCAACCTCAACAGGAAGACTATATAATCTCCAAGGTTTGTATTTATATGACAACAGATTGCAAGGATACATCCCGAATGAAGTTTGTCAACTAAACTACCTAGCTGAGTTAATTTTGTATGGGAATCAACTCACTGGTTGCATACCTTCCTGCTTGGGTAATCTAACTGCAGCGCTAAGAATTCTATCAATAGGGTCCAATTTGCTGAATTCAACAATACCATCGACCTTGTGGGATCTTACTGATATCTTGCAAGTAAATTTGTCTTCAAATTCTTTGAGTGGATCTCTCTCACAAGGTGTTGGCAATTTGAAAGTTGCCACAGATATATTGTTATCGTACAACCAATTGTCAGGCACTATACCAAGCAACATTGGGGGTCTTCAAGATTTGGTGAATCTCGACTTGGGAAATAATAAACTAGAAGGCACAATTCCTAGTTCACTTGGCAACTCTTTAAGCCTGAAGTTCTTGGATTTATCCAAAAACCAATTATTTGGAGTGATTCCGAAGTCTCTTGAAGCACTCTCATATCTCCAGTATATGAATTTGTCTTTTAACAAACTCCAAGGTGAAATTCCAACGGATGGACCTTTCAGAAACTTCTCTGCTCAATCATTTGTTTCTAATCATGGACTCTGTGGGCCATCTCGGTTTCATGTTCCACCATGCAAAAAAAGAAGTGGTAGATCTATCTTGAAATATGTCATTCCAGGGATCTTGTCAACAATGCTTATATTGACCTCCATTTGGATGTTGATGTTACACAGAAAAAAGAATGTGAAATCTGCAACTGAAACTACCTTGCCTCAACTTCTATGGAGAAGAGTTTCATACCAAGAGCTTCTAAGTACAACAAATGGATTCCATGAAGGTAACTTACTTGGCACTGGGGGTTTTGGCTCAGTATATGCAGGAACACTTTCAGATGGGATAGACGTTGCCATAAAAGTTTTCAATTTAGAGCTAGAAGGAGCATCCACGAGTTTTGATGTTGAATGTGAGATGTTAAGCAATATTCGTCACCGAAATCTTATCAAAGTCATAAGTTGCTGCAGTCAAATTGATTTCAAAGCGGTTGTACTGAACTATATGCCTAATGGGAGCCTTGACAAGTGGTTATATTCTCCGAACTATTCCTTGAATATCCTGCAGAGGTTGAATATATTGATAGATGTTGCATCGGCATTGGAGTATCTTCATCATGGTTATGAAACACCTATTGTGCATTGTGATTTGAAGCCCAGAAACATATTACTAGACAATGATATGGGTGCACATGTTACTGACTTTGGTATTGCAAAACTCTTGGACGGAGGAGATTCTATGACTCGCACCATGACCCTAGCCACAATTGGTTATATGGCTCCAGAGTATGGGATGGAAGGAATAATTACCAAAAGAGCGGATGTGTATAGTTTTGGTATTGTAATGATGGAAACACTCACAAAAAGGAAGCCAACAGATGACATGTTTGTTGGGGAAATGTGTTTGAAGCAATGGGTTGCGAATTCACTGTATGCAAATGCGGTAGTTGATGTCGTGGACACCGATTTACTTCAGACAGAGGAAGATGATGATATTGTGAGCAAGAGAGATTGTTTGTCATCCCTTATGCAATTGGCTCTTTCTTGTTCTGCAGAATCATCAGAAGAGAGAATAAACATGCAAGAGGCTTTAGCCACCCTTAACAAAATCAAGATCAAGTTTTTGAAAAACGCTGCAGCAGTGGTGTTGAACCCTAGAGCTGAGATTTGA

Protein Analysis

1087

Amino Acids

119.71

Weight (kDa)

6.33

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 26 - 63 2.9e-09 Leucine rich repeat N-terminal domain
LRR_8 PF13855 117 - 176 3.6e-10 Leucine rich repeat
LRR_8 PF13855 158 - 200 1.2e-06 Leucine rich repeat
LRR_14 PF23598 159 - 245 1.7e-08 Leucine-rich repeat region
LRR_8 PF13855 360 - 418 5.3e-08 Leucine rich repeat
LRR_14 PF23598 467 - 587 7.9e-07 Leucine-rich repeat region
LRR_8 PF13855 487 - 546 9.9e-06 Leucine rich repeat
LRR_8 PF13855 633 - 691 7.9e-06 Leucine rich repeat
Pkinase PF00069 791 - 1063 5e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 794 - 1063 3.5e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014888)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47640
fragaria_vesca FvH4_3g29360
malus_domestica MD03G1183400.v1.1 MD11G1200400.v1.1
prunus_persica Prupe.4G242700_v2.0.a1
pyrus_communis pycom03g13700 pycom11g17280
rosa_chinensis RchiOBHm_Chr5g0053731
rosa_laevigata RLG00000034898
rosa_multiflora Rmu_sc0001759.1_g000047
rosa_roxburghii Rroxscaffold_1G00026870
rosa_rugosa Rorug05G0281800
rosa_samantha Rh5AG352700 Rh5BG364400 Rh5DG379200
rosa_wichuraiana Rw5G033320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 145
AccB7I CCANNNNNTGG 3 cut(s) 840, 2093, 2882
AccBSI CCGCTC 2 cut(s) 744, 2912
AccI GTMKAC 2 cut(s) 27, 149
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 6 cut(s) 44, 744, 1113, 2582, 2912, 3035
AclI AACGTT 1 cut(s) 431
AclWI GGATC 6 cut(s) 116, 267, 1164, 1749, 1798, 2231
AcoI YGGCCR 1 cut(s) 916
AcsI RAATTY 9 cut(s) 606, 1312, 1686, 1714, 1765, 1777, 2053, 2082, 3016
AcuI CTGAAG 6 cut(s) 187, 348, 590, 845, 1991, 3050
AdeI CACNNNGTG 2 cut(s) 1208, 1805
AfaI GTAC 4 cut(s) 898, 1847, 2359, 2589
AfeI AGCGCT 1 cut(s) 1680
AfiI CCNNNNNNNGG 6 cut(s) 263, 672, 840, 2093, 2256, 2882
AflII CTTAAG 2 cut(s) 1232, 1307
AflIII ACRYGT 2 cut(s) 2785, 2976
AgeI ACCGGT 1 cut(s) 443
AjnI CCWGG 2 cut(s) 21, 2218
AjuI GAANNNNNNNTTGG 4 cut(s) 1895, 1927, 2067, 2099
Alw21I GWGCWC 1 cut(s) 2785
Alw26I GTCTC 1 cut(s) 2025
Alw44I GTGCAC 1 cut(s) 2781
AlwI GGATC 6 cut(s) 116, 267, 1164, 1749, 1798, 2231
Ama87I CYCGRG 1 cut(s) 638
Aor13HI TCCGGA 1 cut(s) 256
Aor51HI AGCGCT 1 cut(s) 1680
AoxI GGCC 2 cut(s) 916, 2150
ApaLI GTGCAC 1 cut(s) 2781
ApeKI GCWGC 7 cut(s) 50, 289, 1458, 1676, 2559, 3227, 3230
ApoI RAATTY 9 cut(s) 606, 1312, 1686, 1714, 1765, 1777, 2053, 2082, 3016
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
AseI ATTAAT 2 cut(s) 507, 954
AsiGI ACCGGT 1 cut(s) 443
Asp700I GAANNNNTTC 2 cut(s) 2335, 2428
AspA2I CCTAGG 1 cut(s) 1093
AspLEI GCGC 2 cut(s) 194, 1681
AspS9I GGNCC 5 cut(s) 411, 821, 1701, 2096, 2150
AsuHPI GGTGA 4 cut(s) 64, 1912, 2090, 2522
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 4 cut(s) 411, 821, 1701, 2096
AvrII CCTAGG 1 cut(s) 1093
BaeGI GKGCMC 1 cut(s) 2785
BalI TGGCCA 1 cut(s) 918
BarI GAAGNNNNNNTAC 2 cut(s) 2370, 2402
BauI CACGAG 2 cut(s) 115, 2488
BbsI GAAGAC 3 cut(s) 1528, 1764, 1880
Bbv12I GWGCWC 1 cut(s) 2785
BbvI GCAGC 7 cut(s) 62, 276, 1470, 1688, 2546, 3214, 3242
BciT130I CCWGG 2 cut(s) 23, 2220
BciVI GTATCC 1 cut(s) 1565
BcoDI GTCTC 1 cut(s) 2025
BfmI CTRYAG 7 cut(s) 39, 684, 1674, 2560, 2657, 3144, 3228
BfoI RGCGCY 1 cut(s) 1682
BfrI CTTAAG 2 cut(s) 1232, 1307
BfuI GTATCC 1 cut(s) 1565
BglII AGATCT 1 cut(s) 2195
BisI GCNGC 7 cut(s) 51, 290, 1459, 1677, 2560, 3228, 3231
BlnI CCTAGG 1 cut(s) 1093
BlpI GCTNAGC 2 cut(s) 367, 1019
BlsI GCNGC 7 cut(s) 52, 291, 1460, 1678, 2561, 3229, 3232
BmcAI AGTACT 1 cut(s) 898
Bme1390I CCNGG 2 cut(s) 23, 2220
Bme18I GGWCC 4 cut(s) 411, 821, 1701, 2096
BmeT110I CYCGRG 1 cut(s) 638
BmgT120I GGNCC 5 cut(s) 411, 821, 1701, 2096, 2150
BmiI GGNNCC 5 cut(s) 412, 463, 1702, 2612, 2874
BmrFI CCNGG 2 cut(s) 23, 2220
BmrI ACTGGG 1 cut(s) 2406
BmsI GCATC 2 cut(s) 2492, 2696
BmuI ACTGGG 1 cut(s) 2406
BpiI GAAGAC 3 cut(s) 1528, 1764, 1880
BplI GAGNNNNNCTC 2 cut(s) 1777, 1809
BpmI CTGGAG 3 cut(s) 1257, 2027, 2859
Bpu1102I GCTNAGC 2 cut(s) 367, 1019
BpuEI CTTGAG 2 cut(s) 760, 1474
BsaBI GATNNNNATC 1 cut(s) 1073
BsaJI CCNNGG 5 cut(s) 946, 1093, 1537, 2074, 2219
BsaWI WCCGGW 2 cut(s) 256, 443
BsaXI ACNNNNNCTCC 4 cut(s) 238, 268, 926, 956
Bsc4I CCNNNNNNNGG 6 cut(s) 263, 672, 840, 2093, 2256, 2882
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 8 cut(s) 82, 149, 349, 811, 1361, 1645, 2044, 2401
Bse3DI GCAATG 2 cut(s) 851, 3011
Bse8I GATNNNNATC 1 cut(s) 1073
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 2 cut(s) 23, 2220
BseDI CCNNGG 5 cut(s) 946, 1093, 1537, 2074, 2219
BseJI GATNNNNATC 1 cut(s) 1073
BseLI CCNNNNNNNGG 6 cut(s) 263, 672, 840, 2093, 2256, 2882
BseMI GCAATG 2 cut(s) 851, 3011
BseMII CTCAG 4 cut(s) 1050, 1602, 2424, 3246
BseNI ACTGG 8 cut(s) 82, 149, 349, 811, 1361, 1645, 2044, 2401
BseRI GAGGAG 1 cut(s) 2838
BseSI GKGCMC 1 cut(s) 2785
BseXI GCAGC 7 cut(s) 62, 276, 1470, 1688, 2546, 3214, 3242
BseYI CCCAGC 1 cut(s) 1048
BsgI GTGCAG 1 cut(s) 477
BshFI GGCC 2 cut(s) 918, 2152
BshTI ACCGGT 1 cut(s) 443
BsiHKAI GWGCWC 1 cut(s) 2785
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 2 cut(s) 257, 444
BslFI GGGAC 2 cut(s) 249, 928
BslI CCNNNNNNNGG 6 cut(s) 263, 672, 840, 2093, 2256, 2882
BsmAI GTCTC 1 cut(s) 2025
BsmFI GGGAC 2 cut(s) 249, 928
BsmI GAATGC 1 cut(s) 783
BsnI GGCC 2 cut(s) 918, 2152
BsoBI CYCGRG 1 cut(s) 638
Bsp1286I GDGCHC 1 cut(s) 2785
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 9 cut(s) 121, 132, 259, 1156, 1741, 1790, 2195, 2223, 3207
Bsp1720I GCTNAGC 2 cut(s) 367, 1019
BspACI CCGC 6 cut(s) 44, 744, 1113, 2582, 2912, 3035
BspANI GGCC 2 cut(s) 918, 2152
BspCNI CTCAG 4 cut(s) 1049, 1603, 2423, 3247
BspEI TCCGGA 1 cut(s) 256
BspLI GGNNCC 5 cut(s) 412, 463, 1702, 2612, 2874
BspMAI CTGCAG 5 cut(s) 1678, 2564, 2661, 3148, 3232
BspPI GGATC 6 cut(s) 116, 267, 1164, 1749, 1798, 2231
BspQI GCTCTTC 1 cut(s) 96
BspTI CTTAAG 2 cut(s) 1232, 1307
BsrBI CCGCTC 2 cut(s) 744, 2912
BsrDI GCAATG 2 cut(s) 851, 3011
BsrFI RCCGGY 1 cut(s) 443
BsrI ACTGG 8 cut(s) 82, 149, 349, 811, 1361, 1645, 2044, 2401
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 5 cut(s) 946, 1093, 1537, 2074, 2219
BssMI GATC 9 cut(s) 121, 132, 259, 1156, 1741, 1790, 2195, 2223, 3207
BssNAI GTATAC 1 cut(s) 28
BssSI CACGAG 2 cut(s) 115, 2488
BssT1I CCWWGG 3 cut(s) 1093, 1537, 2074
Bst1107I GTATAC 1 cut(s) 28
Bst2BI CACGAG 2 cut(s) 115, 2488
Bst2UI CCWGG 2 cut(s) 23, 2220
Bst4CI ACNGT 3 cut(s) 308, 1172, 3024
Bst6I CTCTTC 3 cut(s) 96, 2326, 3153
BstAFI CTTAAG 2 cut(s) 1232, 1307
BstC8I GCNNGC 1 cut(s) 920
BstEII GGTNACC 1 cut(s) 1040
BstH2I RGCGCY 1 cut(s) 1682
BstHHI GCGC 2 cut(s) 194, 1681
BstKTI GATC 9 cut(s) 124, 135, 262, 1159, 1744, 1793, 2198, 2226, 3210
BstMAI GTCTC 1 cut(s) 2025
BstMBI GATC 9 cut(s) 121, 132, 259, 1156, 1741, 1790, 2195, 2223, 3207
BstMWI GCNNNNNNNGC 4 cut(s) 50, 95, 104, 1455
BstNI CCWGG 2 cut(s) 23, 2220
BstNSI RCATGY 4 cut(s) 680, 2789, 2980, 3175
BstPI GGTNACC 1 cut(s) 1040
BstSCI CCNGG 2 cut(s) 21, 2218
BstSFI CTRYAG 7 cut(s) 39, 684, 1674, 2560, 2657, 3144, 3228
BstSLI GKGCMC 1 cut(s) 2785
BstV1I GCAGC 7 cut(s) 62, 276, 1470, 1688, 2546, 3214, 3242
BstV2I GAAGAC 3 cut(s) 1528, 1764, 1880
BstX2I RGATCY 6 cut(s) 259, 1156, 1741, 1790, 2195, 2223
BstXI CCANNNNNNTGG 2 cut(s) 818, 2003
BstYI RGATCY 6 cut(s) 259, 1156, 1741, 1790, 2195, 2223
BstZ17I GTATAC 1 cut(s) 28
BsuI GTATCC 1 cut(s) 1565
BsuRI GGCC 2 cut(s) 918, 2152
BtsI GCAGTG 2 cut(s) 494, 3240
BtsIMutI CAGTG 6 cut(s) 494, 895, 1638, 2394, 3020, 3240
Cac8I GCNNGC 1 cut(s) 920
CfoI GCGC 2 cut(s) 194, 1681
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 5 cut(s) 411, 821, 1701, 2096, 2150
Csp6I GTAC 4 cut(s) 897, 1846, 2358, 2588
CspAI ACCGGT 1 cut(s) 443
CspCI CAANNNNNGTGG 4 cut(s) 871, 906, 2476, 2511
CviQI GTAC 4 cut(s) 897, 1846, 2358, 2588
DpnI GATC 9 cut(s) 123, 134, 261, 1158, 1743, 1792, 2197, 2225, 3209
DpnII GATC 9 cut(s) 121, 132, 259, 1156, 1741, 1790, 2195, 2223, 3207
DraI TTTAAA 1 cut(s) 1317
DraIII CACNNNGTG 2 cut(s) 1208, 1805
DrdI GACNNNNNNGTC 1 cut(s) 145
DseDI GACNNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 916
Eam1104I CTCTTC 3 cut(s) 96, 2326, 3153
EarI CTCTTC 3 cut(s) 96, 2326, 3153
Eco130I CCWWGG 3 cut(s) 1093, 1537, 2074
Eco32I GATATC 2 cut(s) 1014, 1753
Eco47I GGWCC 4 cut(s) 411, 821, 1701, 2096
Eco47III AGCGCT 1 cut(s) 1680
Eco57I CTGAAG 6 cut(s) 187, 348, 590, 845, 1991, 3050
Eco88I CYCGRG 1 cut(s) 638
Eco91I GGTNACC 1 cut(s) 1040
EcoO109I RGGNCCY 1 cut(s) 411
EcoO65I GGTNACC 1 cut(s) 1040
EcoRI GAATTC 3 cut(s) 1686, 1714, 3016
EcoRII CCWGG 2 cut(s) 21, 2218
EcoRV GATATC 2 cut(s) 1014, 1753
EcoT14I CCWWGG 3 cut(s) 1093, 1537, 2074
ErhI CCWWGG 3 cut(s) 1093, 1537, 2074
FaqI GGGAC 2 cut(s) 249, 928
FblI GTMKAC 2 cut(s) 27, 149
Fnu4HI GCNGC 7 cut(s) 51, 290, 1459, 1677, 2560, 3228, 3231
Fsp4HI GCNGC 7 cut(s) 51, 290, 1459, 1677, 2560, 3228, 3231
GlaI GCGC 2 cut(s) 193, 1680
GluI GCNGC 7 cut(s) 51, 290, 1459, 1677, 2560, 3228, 3231
GsaI CCCAGC 1 cut(s) 1052
GsuI CTGGAG 3 cut(s) 1257, 2027, 2859
HaeII RGCGCY 1 cut(s) 1682
HaeIII GGCC 2 cut(s) 918, 2152
HapII CCGG 2 cut(s) 257, 444
HhaI GCGC 2 cut(s) 194, 1681
Hin6I GCGC 2 cut(s) 192, 1679
HinP1I GCGC 2 cut(s) 192, 1679
HincII GTYRAC 2 cut(s) 1595, 2232
HindII GTYRAC 2 cut(s) 1595, 2232
HpaII CCGG 2 cut(s) 257, 444
HphI GGTGA 4 cut(s) 64, 1912, 2090, 2522
Hpy188I TCNGA 8 cut(s) 206, 757, 2016, 2105, 2434, 2637, 3069, 3157
HpyAV CCTTC 7 cut(s) 1088, 1339, 1662, 1925, 2372, 2471, 2885
HpyCH4III ACNGT 3 cut(s) 308, 1172, 3024
HpyCH4IV ACGT 2 cut(s) 431, 2445
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 95, 104, 1455
HpySE526I ACGT 2 cut(s) 431, 2445
HspAI GCGC 2 cut(s) 192, 1679
Kpn2I TCCGGA 1 cut(s) 256
Kzo9I GATC 9 cut(s) 121, 132, 259, 1156, 1741, 1790, 2195, 2223, 3207
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 3 cut(s) 2480, 2610, 2878
Lsp1109I GCAGC 7 cut(s) 62, 276, 1470, 1688, 2546, 3214, 3242
LweI GCATC 2 cut(s) 2492, 2696
MaeII ACGT 2 cut(s) 431, 2445
MalI GATC 9 cut(s) 123, 134, 261, 1158, 1743, 1792, 2197, 2225, 3209
MbiI CCGCTC 2 cut(s) 744, 2912
MboI GATC 9 cut(s) 121, 132, 259, 1156, 1741, 1790, 2195, 2223, 3207
MfeI CAATTG 5 cut(s) 1411, 1490, 1853, 2859, 3125
MflI RGATCY 6 cut(s) 259, 1156, 1741, 1790, 2195, 2223
MhlI GDGCHC 1 cut(s) 2785
MlsI TGGCCA 1 cut(s) 918
MluNI TGGCCA 1 cut(s) 918
MlyI GAGTC 5 cut(s) 231, 399, 1264, 2136, 2830
MmeI TCCRAC 3 cut(s) 774, 1532, 2111
Mox20I TGGCCA 1 cut(s) 918
MroI TCCGGA 1 cut(s) 256
MroXI GAANNNNTTC 2 cut(s) 2335, 2428
MscI TGGCCA 1 cut(s) 918
MslI CAYNNNNRTG 4 cut(s) 788, 835, 2258, 2715
Msp20I TGGCCA 1 cut(s) 918
MspCI CTTAAG 2 cut(s) 1232, 1307
MspI CCGG 2 cut(s) 257, 444
MspR9I CCNGG 2 cut(s) 23, 2220
MunI CAATTG 5 cut(s) 1411, 1490, 1853, 2859, 3125
Mva1269I GAATGC 1 cut(s) 783
MvaI CCWGG 2 cut(s) 23, 2220
MwoI GCNNNNNNNGC 4 cut(s) 50, 95, 104, 1455
NdeII GATC 9 cut(s) 121, 132, 259, 1156, 1741, 1790, 2195, 2223, 3207
NlaIV GGNNCC 5 cut(s) 412, 463, 1702, 2612, 2874
NmuCI GTSAC 3 cut(s) 112, 317, 2528
NspI RCATGY 4 cut(s) 680, 2789, 2980, 3175
PaeR7I CTCGAG 1 cut(s) 638
PciI ACATGT 2 cut(s) 2785, 2976
PciSI GCTCTTC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 3054
PctI GAATGC 1 cut(s) 783
PdmI GAANNNNTTC 2 cut(s) 2335, 2428
PflMI CCANNNNNTGG 3 cut(s) 840, 2093, 2882
PinAI ACCGGT 1 cut(s) 443
PkrI GCNGC 7 cut(s) 52, 291, 1460, 1678, 2561, 3229, 3232
PleI GAGTC 5 cut(s) 231, 398, 1264, 2136, 2830
PpsI GAGTC 5 cut(s) 231, 398, 1264, 2136, 2830
PpuMI RGGWCCY 1 cut(s) 411
PscI ACATGT 2 cut(s) 2785, 2976
PshBI ATTAAT 2 cut(s) 507, 954
Psp1406I AACGTT 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 21, 2218
PspEI GGTNACC 1 cut(s) 1040
PspFI CCCAGC 1 cut(s) 1048
PspGI CCWGG 2 cut(s) 21, 2218
PspN4I GGNNCC 5 cut(s) 412, 463, 1702, 2612, 2874
PspPI GGNCC 5 cut(s) 411, 821, 1701, 2096, 2150
PspPPI RGGWCCY 1 cut(s) 411
PsrI GAACNNNNNNTAC 2 cut(s) 212, 244
PstI CTGCAG 5 cut(s) 1678, 2564, 2661, 3148, 3232
PsuI RGATCY 6 cut(s) 259, 1156, 1741, 1790, 2195, 2223
RsaI GTAC 4 cut(s) 898, 1847, 2359, 2589
RsaNI GTAC 4 cut(s) 897, 1846, 2358, 2588
RseI CAYNNNNRTG 4 cut(s) 788, 835, 2258, 2715
SapI GCTCTTC 1 cut(s) 96
SatI GCNGC 7 cut(s) 51, 290, 1459, 1677, 2560, 3228, 3231
Sau3AI GATC 9 cut(s) 121, 132, 259, 1156, 1741, 1790, 2195, 2223, 3207
Sau96I GGNCC 5 cut(s) 411, 821, 1701, 2096, 2150
ScaI AGTACT 1 cut(s) 898
SchI GAGTC 5 cut(s) 231, 399, 1264, 2136, 2830
ScrFI CCNGG 2 cut(s) 23, 2220
SduI GDGCHC 1 cut(s) 2785
SfaNI GCATC 2 cut(s) 2492, 2696
SfcI CTRYAG 7 cut(s) 39, 684, 1674, 2560, 2657, 3144, 3228
Sfr274I CTCGAG 1 cut(s) 638
SinI GGWCC 4 cut(s) 411, 821, 1701, 2096
SlaI CTCGAG 1 cut(s) 638
SmiMI CAYNNNNRTG 4 cut(s) 788, 835, 2258, 2715
SmlI CTYRAG 5 cut(s) 638, 739, 1232, 1307, 1453
SmoI CTYRAG 5 cut(s) 638, 739, 1232, 1307, 1453
SsiI CCGC 6 cut(s) 44, 744, 1113, 2582, 2912, 3035
SspI AATATT 2 cut(s) 1285, 2524
StyD4I CCNGG 2 cut(s) 21, 2218
StyI CCWWGG 3 cut(s) 1093, 1537, 2074
TaaI ACNGT 3 cut(s) 308, 1172, 3024
TaiI ACGT 2 cut(s) 434, 2448
TaqI TCGA 5 cut(s) 639, 875, 1268, 1730, 1908
TatI WGTACW 3 cut(s) 896, 2357, 2587
TscAI CASTG 6 cut(s) 501, 895, 1645, 2401, 3027, 3240
TseFI GTSAC 3 cut(s) 112, 317, 2528
TseI GCWGC 7 cut(s) 50, 289, 1458, 1676, 2559, 3227, 3230
Tsp45I GTSAC 3 cut(s) 112, 317, 2528
TspDTI ATGAA 9 cut(s) 302, 806, 1599, 2066, 2153, 2328, 2391, 2696, 2733
TspGWI ACGGA 3 cut(s) 1169, 2105, 2835
TspRI CASTG 6 cut(s) 501, 895, 1645, 2401, 3027, 3240
Van91I CCANNNNNTGG 3 cut(s) 840, 2093, 2882
Vha464I CTTAAG 2 cut(s) 1232, 1307
VneI GTGCAC 1 cut(s) 2781
VpaK11BI GGWCC 4 cut(s) 411, 821, 1701, 2096
VspI ATTAAT 2 cut(s) 507, 954
XapI RAATTY 9 cut(s) 606, 1312, 1686, 1714, 1765, 1777, 2053, 2082, 3016
XbaI TCTAGA 1 cut(s) 1159
XceI RCATGY 4 cut(s) 680, 2789, 2980, 3175
XcmI CCANNNNNNNNNTGG 2 cut(s) 837, 1734
XhoI CTCGAG 1 cut(s) 638
XmaJI CCTAGG 1 cut(s) 1093
XmiI GTMKAC 2 cut(s) 27, 149
XmnI GAANNNNTTC 2 cut(s) 2335, 2428
ZrmI AGTACT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.