Prupe.4G242700_v2.0.a1

Nuclear transcription factor Y subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014888
Physical Location & Seq
Forward (+)
16019863 .. 16021262
1400 bp
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UTR
Exon/CDS
Intron
Prupe.4G242700.1

Sequence Viewer

Length: 600 bp
ATGGCGGACTCCGACAACGACTCGGGCGGAGCGCACACGAAATCAAACAGCGAGCTCTCGCCTCGGGAACAGGACCGGCTGCTGCCGATTGCGAACGTGAGCCGGATCATGAAGAAGGCGCTGCCGGCGAACGCGAAGATCTCCAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATAAGCTTCATCACCGGCGAGGCCTCGGACAAGTGCCAGAGGGAGAAGCGGAAGACGATCAACGGCGATGATTTGCTCTGGGCGATGACGACGTTAGGGTTCGAGGAGTACGTGGAGCCTCTCAAGGTTTATCTGCAGAGGTTCAGAGAGATGGAGGGGGAGAAGAGCAGCGTGGCAGCGCGTGACAAGGACGCGAGTGGAGGTGGCGGGAATGGTGGGGTTGGGTACGAGAGTGGTGGTGGGAGTGGAGGAGCTGGGGTATATTGGCAGCAGCAACAGCAGCAGCAGCAGCATCAGCATCAGCATCAGCATCAGGGACACGTGTACGGCGGGAGCGGGTTTCATCAGATGGGTGTGAGTGGAGTTGGGTTGGGGAAGGGTGGGCCCGGATCTAACATGGGTAGACCCAGATAA

Protein Analysis

200

Amino Acids

21.41

Weight (kDa)

6.66

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014888)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47640
fragaria_vesca FvH4_3g29360
malus_domestica MD03G1183400.v1.1 MD11G1200400.v1.1
prunus_persica Prupe.4G242700_v2.0.a1
pyrus_communis pycom03g13700 pycom11g17280
rosa_chinensis RchiOBHm_Chr5g0053731
rosa_laevigata RLG00000034898
rosa_multiflora Rmu_sc0001759.1_g000047
rosa_roxburghii Rroxscaffold_1G00026870
rosa_rugosa Rorug05G0281800
rosa_samantha Rh5AG352700 Rh5BG364400 Rh5DG379200
rosa_wichuraiana Rw5G033320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 522
AccI GTMKAC 1 cut(s) 589
AccII CGCG 4 cut(s) 134, 152, 367, 380
AciI CCGC 6 cut(s) 5, 27, 235, 393, 516, 522
AclWI GGATC 2 cut(s) 113, 583
AcvI CACGTG 1 cut(s) 508
AfaI GTAC 3 cut(s) 296, 413, 512
AflIII ACRYGT 2 cut(s) 505, 507
AluBI AGCT 3 cut(s) 55, 192, 440
AluI AGCT 3 cut(s) 55, 192, 440
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 2 cut(s) 113, 583
Ama87I CYCGRG 2 cut(s) 22, 63
AoxI GGCC 2 cut(s) 207, 569
ApaI GGGCCC 1 cut(s) 573
AspLEI GCGC 3 cut(s) 34, 121, 367
AspS9I GGNCC 3 cut(s) 73, 569, 570
AsuC2I CCSGG 1 cut(s) 573
AsuHPI GGTGA 1 cut(s) 190
AvaI CYCGRG 2 cut(s) 22, 63
AvaII GGWCC 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 573
BaeI ACNNNNGTAYC 2 cut(s) 403, 436
BanII GRGCYC 2 cut(s) 57, 573
BbrPI CACGTG 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 57
BccI CCATC 2 cut(s) 331, 529
BceAI ACGGC 2 cut(s) 265, 529
BcnI CCSGG 1 cut(s) 573
BcoDI GTCTC 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 320
BfoI RGCGCY 1 cut(s) 122
BglII AGATCT 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 573
Bme18I GGWCC 1 cut(s) 73
BmeT110I CYCGRG 2 cut(s) 22, 63
BmgT120I GGNCC 3 cut(s) 73, 569, 570
BmiI GGNNCC 2 cut(s) 303, 571
BmrFI CCNGG 1 cut(s) 573
BmsI GCATC 4 cut(s) 487, 493, 499, 505
BpiI GAAGAC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 573
BsaAI YACGTR 2 cut(s) 298, 508
BsaJI CCNNGG 3 cut(s) 62, 144, 210
BsaXI ACNNNNNCTCC 4 cut(s) 161, 191, 429, 459
Bse118I RCCGGY 3 cut(s) 75, 124, 200
BseDI CCNNGG 3 cut(s) 62, 144, 210
BseRI GAGGAG 2 cut(s) 305, 450
BseSI GKGCMC 1 cut(s) 573
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 185
Bsh1236I CGCG 4 cut(s) 134, 152, 367, 380
BshFI GGCC 2 cut(s) 209, 571
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 2 cut(s) 22, 63
BsiSI CCGG 5 cut(s) 76, 103, 125, 201, 573
BslFI GGGAC 1 cut(s) 516
BsmAI GTCTC 1 cut(s) 152
BsmBI CGTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 516
BsnI GGCC 2 cut(s) 209, 571
BsoBI CYCGRG 2 cut(s) 22, 63
Bsp120I GGGCCC 1 cut(s) 569
Bsp1286I GDGCHC 2 cut(s) 57, 573
Bsp143I GATC 4 cut(s) 105, 138, 243, 575
BspACI CCGC 6 cut(s) 5, 27, 235, 393, 516, 522
BspANI GGCC 2 cut(s) 209, 571
BspFNI CGCG 4 cut(s) 134, 152, 367, 380
BspHI TCATGA 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 303, 571
BspMAI CTGCAG 1 cut(s) 324
BspPI GGATC 2 cut(s) 113, 583
BspQI GCTCTTC 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 522
BsrFI RCCGGY 3 cut(s) 75, 124, 200
BssAI RCCGGY 3 cut(s) 75, 124, 200
BssECI CCNNGG 3 cut(s) 62, 144, 210
BssMI GATC 4 cut(s) 105, 138, 243, 575
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 344
BstBAI YACGTR 2 cut(s) 298, 508
BstC8I GCNNGC 2 cut(s) 53, 126
BstFNI CGCG 4 cut(s) 134, 152, 367, 380
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 3 cut(s) 34, 121, 367
BstKTI GATC 4 cut(s) 108, 141, 246, 578
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 4 cut(s) 105, 138, 243, 575
BstMWI GCNNNNNNNGC 6 cut(s) 125, 463, 466, 472, 475, 481
BstSCI CCNGG 1 cut(s) 571
BstSFI CTRYAG 1 cut(s) 320
BstSLI GKGCMC 1 cut(s) 573
BstUI CGCG 4 cut(s) 134, 152, 367, 380
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 2 cut(s) 138, 575
BstYI RGATCY 2 cut(s) 138, 575
BsuRI GGCC 2 cut(s) 209, 571
BtgZI GCGATG 2 cut(s) 267, 284
Cac8I GCNNGC 2 cut(s) 53, 126
CciI TCATGA 1 cut(s) 108
CfoI GCGC 3 cut(s) 34, 121, 367
Cfr10I RCCGGY 3 cut(s) 75, 124, 200
Cfr13I GGNCC 3 cut(s) 73, 569, 570
CseI GACGC 2 cut(s) 158, 386
Csp6I GTAC 3 cut(s) 295, 412, 511
CviAII CATG 2 cut(s) 109, 583
CviJI RGCY 8 cut(s) 55, 79, 102, 192, 209, 304, 440, 571
CviKI_1 RGCY 8 cut(s) 55, 79, 102, 192, 209, 304, 440, 571
CviQI GTAC 3 cut(s) 295, 412, 511
DpnI GATC 4 cut(s) 107, 140, 245, 577
DpnII GATC 4 cut(s) 105, 138, 243, 575
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
EciI GGCGGA 2 cut(s) 20, 42
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 144
Eco147I AGGCCT 1 cut(s) 209
Eco24I GRGCYC 2 cut(s) 57, 573
Eco47I GGWCC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 55
Eco72I CACGTG 1 cut(s) 508
Eco88I CYCGRG 2 cut(s) 22, 63
EcoICRI GAGCTC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 2 cut(s) 57, 573
ErhI CCWWGG 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 2 cut(s) 112, 586
FaiI YATR 4 cut(s) 110, 188, 448, 584
FaqI GGGAC 1 cut(s) 516
FatI CATG 2 cut(s) 108, 582
FauI CCCGC 3 cut(s) 386, 509, 515
FblI GTMKAC 1 cut(s) 589
FriOI GRGCYC 2 cut(s) 57, 573
GlaI GCGC 3 cut(s) 33, 120, 366
GsaI CCCAGC 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 2 cut(s) 209, 571
HapII CCGG 5 cut(s) 76, 103, 125, 201, 573
HgaI GACGC 2 cut(s) 158, 386
HhaI GCGC 3 cut(s) 34, 121, 367
Hin1II CATG 2 cut(s) 112, 586
Hin6I GCGC 3 cut(s) 32, 119, 365
HinP1I GCGC 3 cut(s) 32, 119, 365
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 2 cut(s) 8, 20
HpaII CCGG 5 cut(s) 76, 103, 125, 201, 573
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 2 cut(s) 511, 590
Hpy188I TCNGA 5 cut(s) 13, 181, 214, 332, 534
Hpy188III TCNNGA 2 cut(s) 65, 109
Hpy8I GTNNAC 2 cut(s) 511, 590
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 3 cut(s) 109, 148, 556
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4IV ACGT 4 cut(s) 96, 278, 297, 507
HpyCH4V TGCA 2 cut(s) 166, 322
HpyF10VI GCNNNNNNNGC 6 cut(s) 125, 463, 466, 472, 475, 481
HpySE526I ACGT 4 cut(s) 96, 278, 297, 507
Hsp92II CATG 2 cut(s) 112, 586
HspAI GCGC 3 cut(s) 32, 119, 365
KroI GCCGGC 1 cut(s) 124
KroNI GCCGGC 1 cut(s) 126
Kzo9I GATC 4 cut(s) 105, 138, 243, 575
LguI GCTCTTC 1 cut(s) 344
LmnI GCTCC 4 cut(s) 29, 301, 437, 519
LweI GCATC 4 cut(s) 487, 493, 499, 505
MaeII ACGT 4 cut(s) 96, 278, 297, 507
MaeIII GTNAC 1 cut(s) 368
MalI GATC 4 cut(s) 107, 140, 245, 577
MbiI CCGCTC 1 cut(s) 522
MboI GATC 4 cut(s) 105, 138, 243, 575
MboII GAAGA 4 cut(s) 124, 148, 250, 361
MflI RGATCY 2 cut(s) 138, 575
MhlI GDGCHC 2 cut(s) 57, 573
MlyI GAGTC 2 cut(s) 2, 14
MmeI TCCRAC 2 cut(s) 36, 159
MroNI GCCGGC 1 cut(s) 124
MspI CCGG 5 cut(s) 76, 103, 125, 201, 573
MspR9I CCNGG 1 cut(s) 573
MvnI CGCG 4 cut(s) 134, 152, 367, 380
MwoI GCNNNNNNNGC 6 cut(s) 125, 463, 466, 472, 475, 481
NaeI GCCGGC 1 cut(s) 126
NciI CCSGG 1 cut(s) 573
NdeII GATC 4 cut(s) 105, 138, 243, 575
NgoMIV GCCGGC 1 cut(s) 124
NlaIII CATG 2 cut(s) 112, 586
NlaIV GGNNCC 2 cut(s) 303, 571
NmuCI GTSAC 1 cut(s) 368
PagI TCATGA 1 cut(s) 108
PceI AGGCCT 1 cut(s) 209
PciSI GCTCTTC 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PdiI GCCGGC 1 cut(s) 126
PleI GAGTC 2 cut(s) 2, 14
PmaCI CACGTG 1 cut(s) 508
PmlI CACGTG 1 cut(s) 508
PpsI GAGTC 2 cut(s) 2, 14
Ppu21I YACGTR 2 cut(s) 298, 508
Psp124BI GAGCTC 1 cut(s) 57
PspCI CACGTG 1 cut(s) 508
PspFI CCCAGC 1 cut(s) 440
PspN4I GGNNCC 2 cut(s) 303, 571
PspOMI GGGCCC 1 cut(s) 569
PspPI GGNCC 3 cut(s) 73, 569, 570
PstI CTGCAG 1 cut(s) 324
PsuI RGATCY 2 cut(s) 138, 575
RsaI GTAC 3 cut(s) 296, 413, 512
RsaNI GTAC 3 cut(s) 295, 412, 511
SacI GAGCTC 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 344
Sau3AI GATC 4 cut(s) 105, 138, 243, 575
Sau96I GGNCC 3 cut(s) 73, 569, 570
SchI GAGTC 2 cut(s) 2, 14
ScrFI CCNGG 1 cut(s) 573
SduI GDGCHC 2 cut(s) 57, 573
SfaNI GCATC 4 cut(s) 487, 493, 499, 505
SfcI CTRYAG 1 cut(s) 320
SgrAI CRCCGGYG 1 cut(s) 200
SinI GGWCC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 6 cut(s) 5, 27, 235, 393, 516, 522
SstI GAGCTC 1 cut(s) 57
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 571
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 163
TaiI ACGT 4 cut(s) 99, 281, 300, 510
TaqI TCGA 1 cut(s) 288
TseFI GTSAC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 4 cut(s) 125, 175, 184, 518
VpaK11BI GGWCC 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.