Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015996

Physical Location & Seq

Genomic Coordinates Reverse (-)

19532270 .. 19533390

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTCGTCGGAGAAACGTGTAGGCATGGTCGAGAAAAGTAACAACAAGAGACAAAGAGTGAACCAAGTTCCCGTGTTCAGCATCAACGACCACCACGACGTTCTTGTTGAAATCCTCCGGCGACTAGACGGTTCATCTCTCTGTTCAGCTGCATGTGTGTGCCGTCTTTGGTCAGCCGTGGCTCGAAACGACTCTATATGGGAAGAGCTCTGTTTCCGACAAGTGTCACCACGACCATCTTTGTCTCTTCGTTCCGTTGTGTCGGCTCTTGGTGGCTACCGATGTCTCTACTTCCTCTGTATCCGTCCCGTCCTGGCACGACTCCCTAAGCTTCTTTGGACACGAGACCAGCTTCAGCTCTCTCTGTCACTTTACTGTGTCCATTACTACGAGCGCCTCTACGTCGGCGCGTGGCTTGGAGACGCGCCACCTTCGTCGCTTATATTTCTTCGGAAGCCCGTTAACGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009966 GO:0009987 GO:0010033 GO:0010476 GO:0010498 GO:0010646 GO:0019005 GO:0019538 GO:0019941 GO:0023051 GO:0023052 GO:0030163 GO:0031461 GO:0032870 GO:0032991 GO:0033993 GO:0042221 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

157

Amino Acids

17.97

Weight (kDa)

9.5

Isoelectric Point (pI)

64.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	32 - 73	4.4e-11	F-box-like
F-box	PF00646	33 - 68	9.8e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48170
fragaria_vesca	FvH4_6g40870
malus_domestica	MD09G1123900.v1.1 MD17G1114700.v1.1
prunus_persica	Prupe.3G200200_v2.0.a1
pyrus_communis	pycom09g04800 pycom17g10600
rosa_chinensis	RchiOBHm_Chr2g0156431
rosa_laevigata	RLG00000020912
rosa_multiflora	Rmu_sc0005392.1_g000020
rosa_roxburghii	Rroxscaffold_2G00093040
rosa_rugosa	Rorug02G0453100
rosa_samantha	Rh2BG531400 Rh2DG540400
rosa_wichuraiana	Rw2G042810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	410, 425
AclI	AACGTT	1 cut(s)	465
AcuI	CTGAAG	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	5 cut(s)	149, 208, 331, 352, 358
AluI	AGCT	5 cut(s)	149, 208, 331, 352, 358
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	5 cut(s)	43, 249, 290, 339, 414
ApeKI	GCWGC	1 cut(s)	149
AspLEI	GCGC	3 cut(s)	396, 410, 427
AsuHPI	GGTGA	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	2 cut(s)	147, 161
BciT130I	CCWGG	1 cut(s)	314
BciVI	GTATCC	1 cut(s)	311
BcoDI	GTCTC	5 cut(s)	43, 249, 290, 339, 414
BfaI	CTAG	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	311
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	90
BoxI	GACNNNNGTC	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	136
Bsh1236I	CGCG	2 cut(s)	410, 425
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	291
BsmAI	GTCTC	5 cut(s)	43, 249, 290, 339, 414
BsmBI	CGTCTC	1 cut(s)	414
BsmFI	GGGAC	1 cut(s)	291
Bso31I	GGTCTC	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	210
BspFNI	CGCG	2 cut(s)	410, 425
BspQI	GCTCTTC	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	2 cut(s)	131, 377
Bst6I	CTCTTC	2 cut(s)	198, 252
BstDEI	CTNAG	1 cut(s)	327
BstDSI	CCRYGG	1 cut(s)	177
BstFNI	CGCG	2 cut(s)	410, 425
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	3 cut(s)	396, 410, 427
BstMAI	GTCTC	5 cut(s)	43, 249, 290, 339, 414
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	156
BstPAI	GACNNNNGTC	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	312
BstUI	CGCG	2 cut(s)	410, 425
BstV1I	GCAGC	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	177
CfoI	GCGC	3 cut(s)	396, 410, 427
CseI	GACGC	1 cut(s)	431
CviAII	CATG	2 cut(s)	25, 153
DdeI	CTNAG	1 cut(s)	327
Eam1104I	CTCTTC	2 cut(s)	198, 252
EarI	CTCTTC	2 cut(s)	198, 252
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	339
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	414
FaeI	CATG	2 cut(s)	28, 156
FaiI	YATR	5 cut(s)	26, 154, 197, 199, 443
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	2 cut(s)	24, 152
Fnu4HI	GCNGC	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	3 cut(s)	395, 409, 426
GluI	GCNGC	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	397
HapII	CCGG	1 cut(s)	118
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	3 cut(s)	396, 410, 427
Hin1II	CATG	2 cut(s)	28, 156
Hin6I	GCGC	3 cut(s)	394, 408, 425
HinP1I	GCGC	3 cut(s)	394, 408, 425
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	2 cut(s)	191, 321
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	1 cut(s)	219
Hpy166II	GTNNAC	2 cut(s)	61, 463
Hpy188I	TCNGA	4 cut(s)	10, 218, 453, 473
Hpy188III	TCNNGA	1 cut(s)	31
Hpy8I	GTNNAC	2 cut(s)	61, 463
Hpy99I	CGWCG	4 cut(s)	10, 101, 407, 439
HpyAV	CCTTC	1 cut(s)	441
HpyCH4III	ACNGT	2 cut(s)	131, 377
HpyCH4IV	ACGT	4 cut(s)	16, 99, 402, 465
HpyCH4V	TGCA	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	4 cut(s)	16, 99, 402, 465
Hsp92II	CATG	2 cut(s)	28, 156
HspAI	GCGC	3 cut(s)	394, 408, 425
KspAI	GTTAAC	1 cut(s)	463
LguI	GCTCTTC	1 cut(s)	198
LpnPI	CCDG	4 cut(s)	131, 299, 326, 362
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	4 cut(s)	16, 99, 402, 465
MaeIII	GTNAC	3 cut(s)	38, 225, 366
MboII	GAAGA	3 cut(s)	215, 239, 440
MhlI	GDGCHC	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	185, 315
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	3 cut(s)	125, 305, 407
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	157
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	2 cut(s)	410, 425
NlaIII	CATG	2 cut(s)	28, 156
NmuCI	GTSAC	2 cut(s)	225, 366
NspI	RCATGY	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	2 cut(s)	185, 315
PpsI	GAGTC	2 cut(s)	185, 315
PshAI	GACNNNNGTC	1 cut(s)	223
Psp124BI	GAGCTC	1 cut(s)	210
Psp1406I	AACGTT	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PvuII	CAGCTG	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	1 cut(s)	150
SchI	GAGTC	2 cut(s)	185, 315
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	157
SspMI	CTAG	1 cut(s)	125
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	131, 377
TaiI	ACGT	4 cut(s)	19, 102, 405, 468
TaqI	TCGA	2 cut(s)	30, 184
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TseFI	GTSAC	2 cut(s)	225, 366
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	2 cut(s)	225, 366
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	2 cut(s)	244, 293
XceI	RCATGY	1 cut(s)	156
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.