Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015996

Physical Location & Seq

Genomic Coordinates Forward (+)

76980740 .. 76981998

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG540400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCAGCAAAACTCACCGGAAGAGAACGAGAGACTCCACCAGTTCTGCATCAACGACCACATTGACATCGTCGTAGAGGTCCTCAAACGCCTCGATGGGCCCTCCCTCGGCGTCGCCGCTTGCGTCTGCCGCCTCTGGTGCTCCGTGGCCCGCAACGACTCGCTCTGGGAACACCTCTGCTTCCGCCACGTGTCGTCCCCGCCGCCCTCCTCCGTTCGGCCCATCGTGGTGGCCCTGGGAGGCTACAAGCGTCTCTACATGGTGTGCGTGCGGCCAGTGCTGAGTCGACTCAGCGACTCGACCCTGGTCAGAAGGGTGTGGACTAGGGACGAGGTGCAGCTCTCGCTCTCGTTGTTCTGTGTTGACTACTACGAGAGGAGACTCGGCGGCGGCGATGCGTCGGCTTCGTCGCTCATGTTCCTCTGCAACCCGGTGAACGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009966 GO:0009987 GO:0010033 GO:0010476 GO:0010498 GO:0010646 GO:0019005 GO:0019538 GO:0019941 GO:0023051 GO:0023052 GO:0030163 GO:0031461 GO:0032870 GO:0032991 GO:0033993 GO:0042221 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

147

Amino Acids

16.62

Weight (kDa)

7.58

Isoelectric Point (pI)

60.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	21 - 57	5.6e-07	F-box domain
F-box-like	PF12937	22 - 62	5.8e-10	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48170
fragaria_vesca	FvH4_6g40870
malus_domestica	MD09G1123900.v1.1 MD17G1114700.v1.1
prunus_persica	Prupe.3G200200_v2.0.a1
pyrus_communis	pycom09g04800 pycom17g10600
rosa_chinensis	RchiOBHm_Chr2g0156431
rosa_laevigata	RLG00000020912
rosa_multiflora	Rmu_sc0005392.1_g000020
rosa_roxburghii	Rroxscaffold_2G00093040
rosa_rugosa	Rorug02G0453100
rosa_samantha	Rh2BG531400 Rh2DG540400
rosa_wichuraiana	Rw2G042810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	286
AciI	CCGC	9 cut(s)	117, 130, 151, 184, 200, 203, 271, 387, 390
AcoI	YGGCCR	1 cut(s)	272
AcvI	CACGTG	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	107, 216
AflIII	ACRYGT	1 cut(s)	189
AjnI	CCWGG	2 cut(s)	234, 303
AluBI	AGCT	1 cut(s)	340
AluI	AGCT	1 cut(s)	340
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	3 cut(s)	25, 257, 373
AoxI	GGCC	5 cut(s)	98, 147, 218, 231, 272
ApaI	GGGCCC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	4, 337
AspS9I	GGNCC	6 cut(s)	79, 98, 99, 148, 219, 232
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	102
BbrPI	CACGTG	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	16, 349
BccI	CCATC	2 cut(s)	89, 230
BciT130I	CCWGG	2 cut(s)	236, 305
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	3 cut(s)	25, 257, 373
BfaI	CTAG	1 cut(s)	324
BisI	GCNGC	8 cut(s)	5, 117, 130, 203, 272, 338, 388, 391
BlsI	GCNGC	8 cut(s)	6, 118, 131, 204, 273, 339, 389, 392
Bme1390I	CCNGG	3 cut(s)	236, 305, 431
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	6 cut(s)	79, 98, 99, 148, 219, 232
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	3 cut(s)	236, 305, 431
BmsI	GCATC	2 cut(s)	57, 385
BoxI	GACNNNNGTC	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	5 cut(s)	106, 144, 234, 235, 303
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 216
Bse1I	ACTGG	2 cut(s)	40, 275
BseBI	CCWGG	2 cut(s)	236, 305
BseDI	CCNNGG	5 cut(s)	106, 144, 234, 235, 303
BseLI	CCNNNNNNNGG	2 cut(s)	107, 216
BseMII	CTCAG	2 cut(s)	272, 304
BseNI	ACTGG	2 cut(s)	40, 275
BseRI	GAGGAG	2 cut(s)	199, 391
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	16, 349
BsgI	GTGCAG	1 cut(s)	356
BshFI	GGCC	5 cut(s)	100, 149, 220, 233, 274
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	17, 431
BslFI	GGGAC	2 cut(s)	181, 341
BslI	CCNNNNNNNGG	2 cut(s)	107, 216
BsmAI	GTCTC	3 cut(s)	25, 257, 373
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	2 cut(s)	181, 341
BsnI	GGCC	5 cut(s)	100, 149, 220, 233, 274
Bsp120I	GGGCCC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	102, 143
BspACI	CCGC	9 cut(s)	117, 130, 151, 184, 200, 203, 271, 387, 390
BspANI	GGCC	5 cut(s)	100, 149, 220, 233, 274
BspCNI	CTCAG	2 cut(s)	273, 303
BspLI	GGNNCC	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	40, 275
BssECI	CCNNGG	5 cut(s)	106, 144, 234, 235, 303
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	236, 305
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	111
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	121, 151, 269
BstDEI	CTNAG	2 cut(s)	281, 290
BstDSI	CCRYGG	1 cut(s)	144
BstMAI	GTCTC	3 cut(s)	25, 257, 373
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 138, 277, 343
BstNI	CCWGG	2 cut(s)	236, 305
BstPAI	GACNNNNGTC	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	234, 303, 429
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	16, 349
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuRI	GGCC	5 cut(s)	100, 149, 220, 233, 274
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	3 cut(s)	121, 151, 269
Cfr13I	GGNCC	6 cut(s)	79, 98, 99, 148, 219, 232
CseI	GACGC	4 cut(s)	100, 112, 239, 387
CviAII	CATG	2 cut(s)	259, 415
CviJI	RGCY	8 cut(s)	100, 149, 220, 233, 243, 274, 340, 404
CviKI_1	RGCY	8 cut(s)	100, 149, 220, 233, 243, 274, 340, 404
DdeI	CTNAG	2 cut(s)	281, 290
EaeI	YGGCCR	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	79
Eco72I	CACGTG	1 cut(s)	190
EcoO109I	RGGNCCY	2 cut(s)	79, 99
EcoRII	CCWGG	2 cut(s)	234, 303
EcoT38I	GRGCYC	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	2 cut(s)	262, 418
FaiI	YATR	2 cut(s)	260, 416
FaqI	GGGAC	2 cut(s)	181, 341
FatI	CATG	2 cut(s)	258, 414
FauI	CCCGC	2 cut(s)	158, 207
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	8 cut(s)	5, 117, 130, 203, 272, 338, 388, 391
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	8 cut(s)	5, 117, 130, 203, 272, 338, 388, 391
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	8 cut(s)	5, 117, 130, 203, 272, 338, 388, 391
HaeIII	GGCC	5 cut(s)	100, 149, 220, 233, 274
HapII	CCGG	2 cut(s)	17, 431
HgaI	GACGC	4 cut(s)	100, 112, 239, 387
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	262, 418
HincII	GTYRAC	2 cut(s)	287, 364
HindII	GTYRAC	2 cut(s)	287, 364
HinfI	GANTC	6 cut(s)	33, 158, 283, 288, 296, 381
HpaII	CCGG	2 cut(s)	17, 431
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	4 cut(s)	287, 321, 364, 436
Hpy188I	TCNGA	2 cut(s)	311, 443
Hpy8I	GTNNAC	4 cut(s)	287, 321, 364, 436
Hpy99I	CGWCG	4 cut(s)	74, 116, 403, 412
HpyAV	CCTTC	1 cut(s)	306
HpyCH4IV	ACGT	2 cut(s)	189, 438
HpyCH4V	TGCA	4 cut(s)	4, 48, 337, 426
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 138, 277, 343
HpyF3I	CTNAG	2 cut(s)	281, 290
HpySE526I	ACGT	2 cut(s)	189, 438
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	262, 418
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	9 cut(s)	30, 53, 121, 151, 221, 248, 288, 290, 317
Lsp1109I	GCAGC	2 cut(s)	16, 349
LweI	GCATC	2 cut(s)	57, 385
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	2 cut(s)	189, 438
MboII	GAAGA	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	102, 143
MlyI	GAGTC	6 cut(s)	27, 152, 282, 290, 292, 375
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	2 cut(s)	17, 431
MspR9I	CCNGG	3 cut(s)	236, 305, 431
MvaI	CCWGG	2 cut(s)	236, 305
MwoI	GCNNNNNNNGC	4 cut(s)	129, 138, 277, 343
NciI	CCSGG	1 cut(s)	431
NlaIII	CATG	2 cut(s)	262, 418
NlaIV	GGNNCC	1 cut(s)	100
NmeAIII	GCCGAG	2 cut(s)	87, 363
PasI	CCCWGGG	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 390
PflFI	GACNNNGTC	1 cut(s)	68
PkrI	GCNGC	8 cut(s)	6, 118, 131, 204, 273, 339, 389, 392
PleI	GAGTC	6 cut(s)	27, 152, 282, 290, 291, 375
PmaCI	CACGTG	1 cut(s)	190
PmlI	CACGTG	1 cut(s)	190
PpsI	GAGTC	6 cut(s)	27, 152, 282, 290, 291, 375
Ppu21I	YACGTR	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	2 cut(s)	234, 303
PspCI	CACGTG	1 cut(s)	190
PspGI	CCWGG	2 cut(s)	234, 303
PspN4I	GGNNCC	1 cut(s)	100
PspOMI	GGGCCC	1 cut(s)	98
PspPI	GGNCC	6 cut(s)	79, 98, 99, 148, 219, 232
PspPPI	RGGWCCY	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	227
SalI	GTCGAC	1 cut(s)	285
SatI	GCNGC	8 cut(s)	5, 117, 130, 203, 272, 338, 388, 391
Sau96I	GGNCC	6 cut(s)	79, 98, 99, 148, 219, 232
SchI	GAGTC	6 cut(s)	27, 152, 282, 290, 292, 375
ScrFI	CCNGG	3 cut(s)	236, 305, 431
SduI	GDGCHC	2 cut(s)	102, 143
SetI	ASST	6 cut(s)	81, 177, 192, 336, 342, 441
SfaNI	GCATC	2 cut(s)	57, 385
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	227
SsiI	CCGC	9 cut(s)	117, 130, 151, 184, 200, 203, 271, 387, 390
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	3 cut(s)	234, 303, 429
TaiI	ACGT	2 cut(s)	192, 441
TaqI	TCGA	3 cut(s)	93, 286, 299
TauI	GCSGC	6 cut(s)	119, 132, 205, 274, 390, 393
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	2 cut(s)	4, 337
TspGWI	ACGGA	2 cut(s)	133, 202
TspRI	CASTG	1 cut(s)	282
Tth111I	GACNNNGTC	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	286
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.