Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015996

Physical Location & Seq

Genomic Coordinates Forward (+)

32297989 .. 32299549

Gene Structure 1561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCAGCAAAGCTCACCGGAAGAGAACAACATTAGAGGTCCTCAGTTCTGCATCAACGACCACATTGACATCGTCGTCGAGGTCCTCAAACGCCTCGACGGTCCCTCCCTCGGCGTCGCCGCTTGCGTCTGCCGTCTCTGGTGCTCCGTGGCCCGCAACGACTCTCTCTGGGAGCACCTATGCTTCCGTCACGTGTCGTCTCCGCCGCCCTCTTCTGTTCGGCCAGTCGTGGTGGCCTTGGGAGGCTACAAGAGGCTATACATGGTGTGCGTGCGGCCGGTGCTGAGTCGACTCAGCGACTCGGACCTGGTGAGGCGGGTGTGGACTAGGGACGAGGTGCAGCTCTCGCTGTCGTTGTTCTGTGTTGACTACTACGAGAGGAGGCTCGGCGGCGGCGAGGCGTCGGCGTCGTCCTCGCTCATGTTCCTCTGCAACCCTGTGAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009966 GO:0009987 GO:0010033 GO:0010476 GO:0010498 GO:0010646 GO:0019005 GO:0019538 GO:0019941 GO:0023051 GO:0023052 GO:0030163 GO:0031461 GO:0032870 GO:0032991 GO:0033993 GO:0042221 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

150

Amino Acids

16.7

Weight (kDa)

7.56

Isoelectric Point (pI)

70.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	22 - 58	5.7e-07	F-box domain
F-box-like	PF12937	23 - 63	6e-10	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48170
fragaria_vesca	FvH4_6g40870
malus_domestica	MD09G1123900.v1.1 MD17G1114700.v1.1
prunus_persica	Prupe.3G200200_v2.0.a1
pyrus_communis	pycom09g04800 pycom17g10600
rosa_chinensis	RchiOBHm_Chr2g0156431
rosa_laevigata	RLG00000020912
rosa_multiflora	Rmu_sc0005392.1_g000020
rosa_roxburghii	Rroxscaffold_2G00093040
rosa_rugosa	Rorug02G0453100
rosa_samantha	Rh2BG531400 Rh2DG540400
rosa_wichuraiana	Rw2G042810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	289
AciI	CCGC	8 cut(s)	120, 154, 203, 206, 274, 316, 390, 393
AclI	AACGTT	1 cut(s)	444
AcoI	YGGCCR	2 cut(s)	221, 275
AcvI	CACGTG	1 cut(s)	193
AcyI	GRCGYC	3 cut(s)	114, 401, 407
AfiI	CCNNNNNNNGG	1 cut(s)	110
AflIII	ACRYGT	1 cut(s)	192
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	2 cut(s)	12, 343
AluI	AGCT	2 cut(s)	12, 343
Alw21I	GWGCWC	2 cut(s)	146, 177
Alw26I	GTCTC	2 cut(s)	140, 204
AoxI	GGCC	4 cut(s)	150, 221, 234, 275
ApeKI	GCWGC	2 cut(s)	4, 340
AspS9I	GGNCC	5 cut(s)	38, 82, 101, 151, 304
AsuHPI	GGTGA	2 cut(s)	6, 322
AvaII	GGWCC	4 cut(s)	38, 82, 101, 304
BbrPI	CACGTG	1 cut(s)	193
Bbv12I	GWGCWC	2 cut(s)	146, 177
BbvI	GCAGC	2 cut(s)	16, 352
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	308
BcoDI	GTCTC	2 cut(s)	140, 204
BfaI	CTAG	1 cut(s)	327
BisI	GCNGC	7 cut(s)	5, 120, 206, 275, 341, 391, 394
BlsI	GCNGC	7 cut(s)	6, 121, 207, 276, 342, 392, 395
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	4 cut(s)	38, 82, 101, 304
BmgT120I	GGNCC	5 cut(s)	38, 82, 101, 151, 304
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	193
BsaHI	GRCGYC	3 cut(s)	114, 401, 407
BsaJI	CCNNGG	3 cut(s)	109, 147, 237
BsaWI	WCCGGW	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	109, 147, 237
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMII	CTCAG	3 cut(s)	56, 275, 307
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	394
BseX3I	CGGCCG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	16, 352
BsgI	GTGCAG	1 cut(s)	359
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	4 cut(s)	152, 223, 236, 277
BsiEI	CGRYCG	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	146, 177
BsiSI	CCGG	2 cut(s)	17, 278
BslFI	GGGAC	2 cut(s)	87, 344
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	2 cut(s)	140, 204
BsmBI	CGTCTC	2 cut(s)	140, 204
BsmFI	GGGAC	2 cut(s)	87, 344
BsnI	GGCC	4 cut(s)	152, 223, 236, 277
Bsp1286I	GDGCHC	2 cut(s)	146, 177
BspACI	CCGC	8 cut(s)	120, 154, 203, 206, 274, 316, 390, 393
BspANI	GGCC	4 cut(s)	152, 223, 236, 277
BspCNI	CTCAG	3 cut(s)	55, 276, 306
BspLI	GGNNCC	1 cut(s)	103
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	3 cut(s)	109, 147, 237
BssNI	GRCGYC	3 cut(s)	114, 401, 407
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	2 cut(s)	15, 217
BstACI	GRCGYC	3 cut(s)	114, 401, 407
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	3 cut(s)	124, 154, 272
BstDEI	CTNAG	3 cut(s)	42, 284, 293
BstDSI	CCRYGG	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	140, 204
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 346
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	16, 352
BstZI	CGGCCG	1 cut(s)	275
BsuRI	GGCC	4 cut(s)	152, 223, 236, 277
BtgI	CCRYGG	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	124, 154, 272
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	5 cut(s)	38, 82, 101, 151, 304
CseI	GACGC	4 cut(s)	103, 115, 390, 396
CsiI	ACCWGGT	1 cut(s)	306
CviAII	CATG	2 cut(s)	262, 421
CviJI	RGCY	9 cut(s)	12, 152, 223, 236, 246, 256, 277, 343, 385
CviKI_1	RGCY	9 cut(s)	12, 152, 223, 236, 246, 256, 277, 343, 385
DdeI	CTNAG	3 cut(s)	42, 284, 293
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EaeI	YGGCCR	2 cut(s)	221, 275
EagI	CGGCCG	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	15, 217
EarI	CTCTTC	2 cut(s)	15, 217
EciI	GGCGGA	1 cut(s)	192
EclXI	CGGCCG	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	237
Eco47I	GGWCC	4 cut(s)	38, 82, 101, 304
Eco52I	CGGCCG	1 cut(s)	275
Eco72I	CACGTG	1 cut(s)	193
EcoO109I	RGGNCCY	2 cut(s)	38, 82
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
Esp3I	CGTCTC	2 cut(s)	140, 204
FaeI	CATG	2 cut(s)	265, 424
FaiI	YATR	4 cut(s)	181, 259, 263, 422
FaqI	GGGAC	2 cut(s)	87, 344
FatI	CATG	2 cut(s)	261, 420
FauI	CCCGC	2 cut(s)	161, 309
FblI	GTMKAC	1 cut(s)	289
Fnu4HI	GCNGC	7 cut(s)	5, 120, 206, 275, 341, 391, 394
Fsp4HI	GCNGC	7 cut(s)	5, 120, 206, 275, 341, 391, 394
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	7 cut(s)	5, 120, 206, 275, 341, 391, 394
HaeIII	GGCC	4 cut(s)	152, 223, 236, 277
HapII	CCGG	2 cut(s)	17, 278
HgaI	GACGC	4 cut(s)	103, 115, 390, 396
Hin1I	GRCGYC	3 cut(s)	114, 401, 407
Hin1II	CATG	2 cut(s)	265, 424
HincII	GTYRAC	2 cut(s)	290, 367
HindII	GTYRAC	2 cut(s)	290, 367
HinfI	GANTC	4 cut(s)	161, 286, 291, 299
HpaII	CCGG	2 cut(s)	17, 278
HphI	GGTGA	2 cut(s)	6, 322
Hpy166II	GTNNAC	4 cut(s)	290, 324, 367, 442
Hpy188I	TCNGA	1 cut(s)	304
Hpy8I	GTNNAC	4 cut(s)	290, 324, 367, 442
Hpy99I	CGWCG	6 cut(s)	77, 80, 101, 119, 406, 412
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	2 cut(s)	192, 444
HpyCH4V	TGCA	4 cut(s)	4, 51, 340, 432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 346
HpyF3I	CTNAG	3 cut(s)	42, 284, 293
HpySE526I	ACGT	2 cut(s)	192, 444
Hsp92I	GRCGYC	3 cut(s)	114, 401, 407
Hsp92II	CATG	2 cut(s)	265, 424
LmnI	GCTCC	2 cut(s)	149, 172
LpnPI	CCDG	7 cut(s)	30, 124, 154, 237, 291, 293, 320
Lsp1109I	GCAGC	2 cut(s)	16, 352
LweI	GCATC	1 cut(s)	60
MabI	ACCWGGT	1 cut(s)	306
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	2 cut(s)	192, 444
MaeIII	GTNAC	1 cut(s)	188
MboII	GAAGA	2 cut(s)	32, 204
MhlI	GDGCHC	2 cut(s)	146, 177
MlyI	GAGTC	4 cut(s)	155, 285, 293, 295
MspI	CCGG	2 cut(s)	17, 278
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	280, 346
NlaIII	CATG	2 cut(s)	265, 424
NlaIV	GGNNCC	1 cut(s)	103
NmeAIII	GCCGAG	2 cut(s)	90, 366
NmuCI	GTSAC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 393
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	7 cut(s)	6, 121, 207, 276, 342, 392, 395
PleI	GAGTC	4 cut(s)	155, 285, 293, 294
PmaCI	CACGTG	1 cut(s)	193
PmlI	CACGTG	1 cut(s)	193
PpsI	GAGTC	4 cut(s)	155, 285, 293, 294
Ppu21I	YACGTR	1 cut(s)	193
PpuMI	RGGWCCY	2 cut(s)	38, 82
Psp1406I	AACGTT	1 cut(s)	444
Psp5II	RGGWCCY	2 cut(s)	38, 82
Psp6I	CCWGG	1 cut(s)	306
PspCI	CACGTG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	5 cut(s)	38, 82, 101, 151, 304
PspPPI	RGGWCCY	2 cut(s)	38, 82
PsyI	GACNNNGTC	1 cut(s)	71
SalI	GTCGAC	1 cut(s)	288
SatI	GCNGC	7 cut(s)	5, 120, 206, 275, 341, 391, 394
Sau96I	GGNCC	5 cut(s)	38, 82, 101, 151, 304
SchI	GAGTC	4 cut(s)	155, 285, 293, 295
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	2 cut(s)	146, 177
SetI	ASST	9 cut(s)	14, 40, 84, 180, 195, 309, 339, 345, 447
SexAI	ACCWGGT	1 cut(s)	306
SfaNI	GCATC	1 cut(s)	60
SinI	GGWCC	4 cut(s)	38, 82, 101, 304
SsiI	CCGC	8 cut(s)	120, 154, 203, 206, 274, 316, 390, 393
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	2 cut(s)	195, 447
TaqI	TCGA	3 cut(s)	78, 96, 289
TauI	GCSGC	5 cut(s)	122, 208, 277, 393, 396
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	2 cut(s)	4, 340
Tsp45I	GTSAC	1 cut(s)	188
TspGWI	ACGGA	2 cut(s)	136, 176
Tth111I	GACNNNGTC	1 cut(s)	71
VpaK11BI	GGWCC	4 cut(s)	38, 82, 101, 304
XmiI	GTMKAC	1 cut(s)	289
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.