Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015996

Physical Location & Seq

Genomic Coordinates Forward (+)

20916952 .. 20918052

Gene Structure 1101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G200200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCATCATCAGAAGACACCATCTTCAGAAGACAAAGAGAAAAGGCCCAAGTTCTTCATCAACGACCACATTGACATCCTCGTCGAGATCCTCAAACGCCTCGACGGGCCCTCCCTCGGCGTCGCCGCCTGCGTCTGCCGCCTCTGGTCCACCCTCGCCCGCAACGACTCCCTCTGGGAACACCTCTGCTTCCGCCACGTGTCCTCCCCTCCCCCCTCCTCCGTCCGCCCCGTCGTCGTCGCCCTCGGCGGCTACAAGCGCCTCTACAGGGTCTGCGTCCGCCCCGTCCTGAGTCGACTCAGCGACTCGGACCTGGTCAGGCGTGTCTGGACTCGAGACGAGGTCCAGCTCTCGCTCTCCTTGTTCTGCGTCGACTACTACGAGCGAAGCGGCAGGCTCGGCGGCGGTGGCGGTGGCGGGGATGCGTCCGCATCGTCCCTCATGTTCCTCTGCAACACCGTGAACGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009966 GO:0009987 GO:0010033 GO:0010476 GO:0010498 GO:0010646 GO:0019005 GO:0019538 GO:0019941 GO:0023051 GO:0023052 GO:0030163 GO:0031461 GO:0032870 GO:0032991 GO:0033993 GO:0042221 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

157

Amino Acids

17.43

Weight (kDa)

9.02

Isoelectric Point (pI)

65.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48170
fragaria_vesca	FvH4_6g40870
malus_domestica	MD09G1123900.v1.1 MD17G1114700.v1.1
prunus_persica	Prupe.3G200200_v2.0.a1
pyrus_communis	pycom09g04800 pycom17g10600
rosa_chinensis	RchiOBHm_Chr2g0156431
rosa_laevigata	RLG00000020912
rosa_multiflora	Rmu_sc0005392.1_g000020
rosa_roxburghii	Rroxscaffold_2G00093040
rosa_rugosa	Rorug02G0453100
rosa_samantha	Rh2BG531400 Rh2DG540400
rosa_wichuraiana	Rw2G042810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccI	GTMKAC	2 cut(s)	295, 372
AclWI	GGATC	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	9
AcvI	CACGTG	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	116, 268
AflIII	ACRYGT	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	82
AlwNI	CAGNNNCTG	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	333
AoxI	GGCC	2 cut(s)	44, 107
ApaI	GGGCCC	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	6 cut(s)	45, 107, 108, 147, 310, 343
AvaI	CYCGRG	1 cut(s)	333
AvaII	GGWCC	3 cut(s)	147, 310, 343
BaeGI	GKGCMC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	111
BbrPI	CACGTG	1 cut(s)	199
BbsI	GAAGAC	2 cut(s)	20, 36
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	265
BfoI	RGCGCY	1 cut(s)	262
BisI	GCNGC	5 cut(s)	126, 139, 250, 391, 403
BlsI	GCNGC	5 cut(s)	127, 140, 251, 392, 404
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	3 cut(s)	147, 310, 343
BmeT110I	CYCGRG	1 cut(s)	333
BmgT120I	GGNCC	6 cut(s)	45, 107, 108, 147, 310, 343
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	3 cut(s)	13, 412, 440
BpiI	GAAGAC	2 cut(s)	20, 36
BsaAI	YACGTR	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	115, 244
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 188, 218
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 268
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	115, 244
BseGI	GGATG	2 cut(s)	75, 427
BseLI	CCNNNNNNNGG	2 cut(s)	116, 268
BseMII	CTCAG	2 cut(s)	281, 313
BseRI	GAGGAG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	111
BshFI	GGCC	2 cut(s)	46, 109
BsiHKCI	CYCGRG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	2 cut(s)	116, 268
BsmAI	GTCTC	1 cut(s)	330
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	46, 109
BsoBI	CYCGRG	1 cut(s)	333
Bsp120I	GGGCCC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	87
BspANI	GGCC	2 cut(s)	46, 109
BspCNI	CTCAG	2 cut(s)	282, 312
BspLI	GGNNCC	1 cut(s)	109
BspPI	GGATC	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	115, 244
BssMI	GATC	1 cut(s)	87
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	460
BstACI	GRCGYC	1 cut(s)	120
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	130, 160, 395
BstDEI	CTNAG	2 cut(s)	290, 299
BstF5I	GGATG	2 cut(s)	75, 427
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 258, 399, 408
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	111
BstV2I	GAAGAC	2 cut(s)	20, 36
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	46, 109
BtsCI	GGATG	2 cut(s)	75, 427
Cac8I	GCNNGC	3 cut(s)	130, 160, 395
CaiI	CAGNNNCTG	1 cut(s)	273
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	6 cut(s)	45, 107, 108, 147, 310, 343
CseI	GACGC	5 cut(s)	109, 121, 265, 358, 414
CsiI	ACCWGGT	1 cut(s)	312
CviAII	CATG	1 cut(s)	442
CviJI	RGCY	5 cut(s)	46, 109, 252, 349, 397
CviKI_1	RGCY	5 cut(s)	46, 109, 252, 349, 397
DdeI	CTNAG	2 cut(s)	290, 299
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
EciI	GGCGGA	3 cut(s)	182, 215, 269
Eco24I	GRGCYC	1 cut(s)	111
Eco47I	GGWCC	3 cut(s)	147, 310, 343
Eco57I	CTGAAG	1 cut(s)	9
Eco72I	CACGTG	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	1 cut(s)	445
FaiI	YATR	1 cut(s)	443
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	1 cut(s)	441
FauI	CCCGC	2 cut(s)	167, 410
FblI	GTMKAC	2 cut(s)	295, 372
Fnu4HI	GCNGC	5 cut(s)	126, 139, 250, 391, 403
FokI	GGATG	2 cut(s)	62, 434
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	5 cut(s)	126, 139, 250, 391, 403
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	5 cut(s)	126, 139, 250, 391, 403
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	2 cut(s)	46, 109
HgaI	GACGC	5 cut(s)	109, 121, 265, 358, 414
HhaI	GCGC	1 cut(s)	261
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	445
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	2 cut(s)	296, 373
HindII	GTYRAC	2 cut(s)	296, 373
HinfI	GANTC	5 cut(s)	167, 292, 297, 305, 331
Hpy166II	GTNNAC	4 cut(s)	150, 296, 373, 463
Hpy188I	TCNGA	4 cut(s)	12, 28, 310, 470
Hpy188III	TCNNGA	4 cut(s)	85, 289, 328, 335
Hpy8I	GTNNAC	4 cut(s)	150, 296, 373, 463
Hpy99I	CGWCG	7 cut(s)	86, 107, 125, 236, 239, 242, 374
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	2 cut(s)	198, 465
HpyCH4V	TGCA	2 cut(s)	4, 453
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 258, 399, 408
HpyF3I	CTNAG	2 cut(s)	290, 299
HpySE526I	ACGT	2 cut(s)	198, 465
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	445
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	87
LweI	GCATC	3 cut(s)	13, 412, 440
MabI	ACCWGGT	1 cut(s)	312
MaeII	ACGT	2 cut(s)	198, 465
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	4 cut(s)	15, 25, 41, 46
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	111
MlyI	GAGTC	5 cut(s)	161, 291, 299, 301, 325
Mph1103I	ATGCAT	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	4 cut(s)	138, 258, 399, 408
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	1 cut(s)	445
NlaIV	GGNNCC	1 cut(s)	109
NmeAIII	GCCGAG	3 cut(s)	96, 225, 378
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	3 cut(s)	129, 162, 378
PflFI	GACNNNGTC	2 cut(s)	314, 341
PkrI	GCNGC	5 cut(s)	127, 140, 251, 392, 404
PleI	GAGTC	5 cut(s)	161, 291, 299, 300, 325
PmaCI	CACGTG	1 cut(s)	199
PmlI	CACGTG	1 cut(s)	199
PpsI	GAGTC	5 cut(s)	161, 291, 299, 300, 325
Ppu21I	YACGTR	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	312
PspCI	CACGTG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	109
PspOMI	GGGCCC	1 cut(s)	107
PspPI	GGNCC	6 cut(s)	45, 107, 108, 147, 310, 343
PstNI	CAGNNNCTG	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	2 cut(s)	314, 341
SalI	GTCGAC	2 cut(s)	294, 371
SatI	GCNGC	5 cut(s)	126, 139, 250, 391, 403
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	6 cut(s)	45, 107, 108, 147, 310, 343
SchI	GAGTC	5 cut(s)	161, 291, 299, 301, 325
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	186, 201, 315, 345, 351, 468
SexAI	ACCWGGT	1 cut(s)	312
SfaNI	GCATC	3 cut(s)	13, 412, 440
SfcI	CTRYAG	1 cut(s)	265
Sfr274I	CTCGAG	1 cut(s)	333
SinI	GGWCC	3 cut(s)	147, 310, 343
SlaI	CTCGAG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	2 cut(s)	201, 468
TaqI	TCGA	5 cut(s)	84, 102, 295, 334, 372
TauI	GCSGC	5 cut(s)	128, 141, 252, 393, 405
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	1 cut(s)	211
Tth111I	GACNNNGTC	2 cut(s)	314, 341
VpaK11BI	GGWCC	3 cut(s)	147, 310, 343
XhoI	CTCGAG	1 cut(s)	333
XmiI	GTMKAC	2 cut(s)	295, 372
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.