Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0015996

Physical Location & Seq

Genomic Coordinates Reverse (-)

3545798 .. 3546268

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCATCAAAACCAAAACACATCATCACAAGACAGTAAAGAGAAAAGACCCAAGTTCTTCATCAACGACCACATTGACATCCTCGTCGAGATCCTCAAACGCCTCGACGGCCCCTCCCTTGGCGTCGCCGCCTGCGTCTGCCACCTCTGGTCCACCGTCGCCAGAAATGACACCATCTGGGAACACCTTTGCTTCCGACACGTGTCATCTCCCCCTCCCTGCTCCGTGAGACCCGTAGTCGTCGCCCTCGGCGGCTACAAGAGGCTCTACAGGGTCTGCATGCGCCCTGTCCTGAGTCGACTCAGTGACTCGGACATGGTCAAGCGAGTCTGGACGCGGGACGAGATCCAGCTCTCGCTTTCGTTGTTCTGTGTCGATTACTACGAGAGAAGCGGGAGGCTCGGCGCCGGTGGTGGCGGGGATGCGTCCGCATCGTCTCTCATGTTCCTCTGCAACACTGTGAATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009966 GO:0009987 GO:0010033 GO:0010476 GO:0010498 GO:0010646 GO:0019005 GO:0019538 GO:0019941 GO:0023051 GO:0023052 GO:0030163 GO:0031461 GO:0032870 GO:0032991 GO:0033993 GO:0042221 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

157

Amino Acids

17.5

Weight (kDa)

8.74

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	25 - 61	5.6e-06	F-box domain
F-box-like	PF12937	26 - 66	4.1e-09	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48170
fragaria_vesca	FvH4_6g40870
malus_domestica	MD09G1123900.v1.1 MD17G1114700.v1.1
prunus_persica	Prupe.3G200200_v2.0.a1
pyrus_communis	pycom09g04800 pycom17g10600
rosa_chinensis	RchiOBHm_Chr2g0156431
rosa_laevigata	RLG00000020912
rosa_multiflora	Rmu_sc0005392.1_g000020
rosa_roxburghii	Rroxscaffold_2G00093040
rosa_rugosa	Rorug02G0453100
rosa_samantha	Rh2BG531400 Rh2DG540400
rosa_wichuraiana	Rw2G042810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	298
AccII	CGCG	1 cut(s)	337
AciI	CCGC	6 cut(s)	129, 252, 337, 393, 417, 429
AclWI	GGATC	2 cut(s)	85, 340
AcvI	CACGTG	1 cut(s)	202
AcyI	GRCGYC	2 cut(s)	123, 405
AfiI	CCNNNNNNNGG	1 cut(s)	119
AflIII	ACRYGT	2 cut(s)	199, 201
AhdI	GACNNNNNGTC	1 cut(s)	236
AluBI	AGCT	1 cut(s)	352
AluI	AGCT	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	223, 441
AlwI	GGATC	2 cut(s)	85, 340
AlwNI	CAGNNNCTG	1 cut(s)	276
AoxI	GGCC	1 cut(s)	109
AspLEI	GCGC	2 cut(s)	285, 407
AspS9I	GGNCC	2 cut(s)	110, 150
AvaII	GGWCC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	404
BbrPI	CACGTG	1 cut(s)	202
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	223, 441
BfmI	CTRYAG	1 cut(s)	268
BfoI	RGCGCY	1 cut(s)	408
BglI	GCCNNNNNGGC	1 cut(s)	108
BisI	GCNGC	2 cut(s)	129, 253
BlsI	GCNGC	2 cut(s)	130, 254
Bme18I	GGWCC	1 cut(s)	150
BmeRI	GACNNNNNGTC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	110, 150
BmiI	GGNNCC	2 cut(s)	112, 406
BmsI	GCATC	3 cut(s)	13, 412, 440
BoxI	GACNNNNGTC	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	202
BsaHI	GRCGYC	2 cut(s)	123, 405
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	118, 247
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	1 cut(s)	407
BseDI	CCNNGG	2 cut(s)	118, 247
BseGI	GGATG	2 cut(s)	78, 427
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	2 cut(s)	284, 316
Bsh1236I	CGCG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	111
BshNI	GGYRCC	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	223, 441
BsmBI	CGTCTC	1 cut(s)	441
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	111
Bso31I	GGTCTC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	90, 345
BspACI	CCGC	6 cut(s)	129, 252, 337, 393, 417, 429
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	285, 315
BspFNI	CGCG	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	112, 406
BspPI	GGATC	2 cut(s)	85, 340
BspT107I	GGYRCC	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	407
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	2 cut(s)	118, 247
BssMI	GATC	2 cut(s)	90, 345
BssNI	GRCGYC	2 cut(s)	123, 405
BssT1I	CCWWGG	1 cut(s)	118
Bst4CI	ACNGT	3 cut(s)	35, 157, 460
BstACI	GRCGYC	2 cut(s)	123, 405
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	133, 281
BstDEI	CTNAG	2 cut(s)	293, 302
BstF5I	GGATG	2 cut(s)	78, 427
BstFNI	CGCG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	2 cut(s)	285, 407
BstKTI	GATC	2 cut(s)	93, 348
BstMAI	GTCTC	2 cut(s)	223, 441
BstMBI	GATC	2 cut(s)	90, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	283
BstPAI	GACNNNNGTC	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	268
BstUI	CGCG	1 cut(s)	337
BstX2I	RGATCY	2 cut(s)	90, 345
BstYI	RGATCY	2 cut(s)	90, 345
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	78, 427
BtsIMutI	CAGTG	2 cut(s)	310, 456
Cac8I	GCNNGC	2 cut(s)	133, 281
CaiI	CAGNNNCTG	1 cut(s)	276
CfoI	GCGC	2 cut(s)	285, 407
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	2 cut(s)	110, 150
CseI	GACGC	4 cut(s)	112, 124, 343, 414
CviAII	CATG	3 cut(s)	280, 316, 442
CviJI	RGCY	5 cut(s)	111, 255, 265, 352, 400
CviKI_1	RGCY	5 cut(s)	111, 255, 265, 352, 400
DdeI	CTNAG	2 cut(s)	293, 302
DinI	GGCGCC	1 cut(s)	406
DpnI	GATC	2 cut(s)	92, 347
DpnII	GATC	2 cut(s)	90, 345
DrdI	GACNNNNNNGTC	1 cut(s)	83
DriI	GACNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1105I	GACNNNNNGTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	150
Eco72I	CACGTG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	118
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	441
FaeI	CATG	3 cut(s)	283, 319, 445
FaiI	YATR	3 cut(s)	281, 317, 443
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	3 cut(s)	279, 315, 441
FauI	CCCGC	3 cut(s)	330, 386, 410
FblI	GTMKAC	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	129, 253
FokI	GGATG	2 cut(s)	65, 434
Fsp4HI	GCNGC	2 cut(s)	129, 253
GlaI	GCGC	2 cut(s)	284, 406
GluI	GCNGC	2 cut(s)	129, 253
HaeII	RGCGCY	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	408
HgaI	GACGC	4 cut(s)	112, 124, 343, 414
HhaI	GCGC	2 cut(s)	285, 407
Hin1I	GRCGYC	2 cut(s)	123, 405
Hin1II	CATG	3 cut(s)	283, 319, 445
Hin6I	GCGC	2 cut(s)	283, 405
HinP1I	GCGC	2 cut(s)	283, 405
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HinfI	GANTC	4 cut(s)	295, 300, 308, 327
HpaII	CCGG	1 cut(s)	408
Hpy166II	GTNNAC	2 cut(s)	153, 299
Hpy188I	TCNGA	2 cut(s)	197, 313
Hpy188III	TCNNGA	3 cut(s)	88, 292, 331
Hpy8I	GTNNAC	2 cut(s)	153, 299
Hpy99I	CGWCG	5 cut(s)	89, 110, 128, 161, 245
HpyCH4III	ACNGT	3 cut(s)	35, 157, 460
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	4, 279, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	2 cut(s)	293, 302
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	2 cut(s)	123, 405
Hsp92II	CATG	3 cut(s)	283, 319, 445
HspAI	GCGC	2 cut(s)	283, 405
KasI	GGCGCC	1 cut(s)	404
Kzo9I	GATC	2 cut(s)	90, 345
LmnI	GCTCC	1 cut(s)	227
LweI	GCATC	3 cut(s)	13, 412, 440
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	92, 347
MboI	GATC	2 cut(s)	90, 345
MboII	GAAGA	1 cut(s)	49
MflI	RGATCY	2 cut(s)	90, 345
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	4 cut(s)	294, 302, 304, 336
MmeI	TCCRAC	1 cut(s)	220
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	108
NarI	GGCGCC	1 cut(s)	405
NdeII	GATC	2 cut(s)	90, 345
NlaIII	CATG	3 cut(s)	283, 319, 445
NlaIV	GGNNCC	2 cut(s)	112, 406
NmeAIII	GCCGAG	2 cut(s)	228, 381
NmuCI	GTSAC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 381
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	130, 254
PleI	GAGTC	4 cut(s)	294, 302, 303, 335
PluTI	GGCGCC	1 cut(s)	408
PmaCI	CACGTG	1 cut(s)	202
PmlI	CACGTG	1 cut(s)	202
PpsI	GAGTC	4 cut(s)	294, 302, 303, 335
Ppu21I	YACGTR	1 cut(s)	202
PshAI	GACNNNNGTC	1 cut(s)	202
PspCI	CACGTG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	112, 406
PspPI	GGNCC	2 cut(s)	110, 150
PstNI	CAGNNNCTG	1 cut(s)	276
PsuI	RGATCY	2 cut(s)	90, 345
PsyI	GACNNNGTC	1 cut(s)	317
SalI	GTCGAC	1 cut(s)	297
SatI	GCNGC	2 cut(s)	129, 253
Sau3AI	GATC	2 cut(s)	90, 345
Sau96I	GGNCC	2 cut(s)	110, 150
SchI	GAGTC	4 cut(s)	294, 302, 304, 336
SetI	ASST	4 cut(s)	147, 189, 204, 354
SfaNI	GCATC	3 cut(s)	13, 412, 440
SfcI	CTRYAG	1 cut(s)	268
SfoI	GGCGCC	1 cut(s)	406
SgrAI	CRCCGGYG	1 cut(s)	407
SinI	GGWCC	1 cut(s)	150
SphI	GCATGC	1 cut(s)	283
SsiI	CCGC	6 cut(s)	129, 252, 337, 393, 417, 429
SspDI	GGCGCC	1 cut(s)	404
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	3 cut(s)	35, 157, 460
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	4 cut(s)	87, 105, 298, 375
TauI	GCSGC	2 cut(s)	131, 255
TscAI	CASTG	2 cut(s)	310, 463
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	2 cut(s)	310, 463
Tth111I	GACNNNGTC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	150
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	298
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.