Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0015996

Physical Location & Seq

Genomic Coordinates Reverse (-)

9824569 .. 9825039

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1114700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGATCAAAACCAAAACACATCATCACGAGAAAGTAAAGAGAAAAGATCCAAGTTCTTCATCAACGACCACATTGACATCCTCGTCGAAATCCTCAAACGCCTCGATGGCCCCTCCCTTGGCGTCGCCGCCTGCGTCTGCCGCCTCTGGTCCACCGTCGCCCGCAACGACTCCCTCTGGGAGCATCTATGCTTCCGCCACGTCTCATCTCCCCCTTCTTCCTCCGTGAAACCCGTCGTCGTTGCCCTCGGCGGCTACAAGAGGCTCTACAGGGTCTGCGTCCGCCCTGTTCTGAGTCGACTCAGCGACTCGGACATGGTCAGAAGAGTCTGGACTCGGGACGAGGTTCAGCTCTCTCTGTCTCTGTTCTGCGTTGATTACTACGAGAGAAGCGGGAGGCTCAGCGGCGGAGGTGGCGGGGATGCGTCCGCATCTTCTCTCATGTTCCTCTGCAACACCGTGAATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009937 GO:0009966 GO:0009987 GO:0010033 GO:0010476 GO:0010498 GO:0010646 GO:0019005 GO:0019538 GO:0019941 GO:0023051 GO:0023052 GO:0030163 GO:0031461 GO:0032870 GO:0032991 GO:0033993 GO:0042221 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1990234 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

157

Amino Acids

17.46

Weight (kDa)

9.02

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	25 - 61	3.9e-07	F-box domain
F-box-like	PF12937	26 - 66	7e-11	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48170
fragaria_vesca	FvH4_6g40870
malus_domestica	MD09G1123900.v1.1 MD17G1114700.v1.1
prunus_persica	Prupe.3G200200_v2.0.a1
pyrus_communis	pycom09g04800 pycom17g10600
rosa_chinensis	RchiOBHm_Chr2g0156431
rosa_laevigata	RLG00000020912
rosa_multiflora	Rmu_sc0005392.1_g000020
rosa_roxburghii	Rroxscaffold_2G00093040
rosa_rugosa	Rorug02G0453100
rosa_samantha	Rh2BG531400 Rh2DG540400
rosa_wichuraiana	Rw2G042810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	298
AclWI	GGATC	2 cut(s)	12, 42
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	119
AjiI	CACGTC	1 cut(s)	202
AluBI	AGCT	1 cut(s)	352
AluI	AGCT	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	208, 366
AlwI	GGATC	2 cut(s)	12, 42
AlwNI	CAGNNNCTG	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	1 cut(s)	109
AspS9I	GGNCC	2 cut(s)	110, 150
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	150
BauI	CACGAG	1 cut(s)	27
BccI	CCATC	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	208, 366
BfmI	CTRYAG	1 cut(s)	268
BglI	GCCNNNNNGGC	1 cut(s)	108
BisI	GCNGC	4 cut(s)	129, 142, 253, 406
BlpI	GCTNAGC	1 cut(s)	401
BlsI	GCNGC	4 cut(s)	130, 143, 254, 407
Bme18I	GGWCC	1 cut(s)	150
BmeT110I	CYCGRG	1 cut(s)	336
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	110, 150
BmiI	GGNNCC	1 cut(s)	112
BmsI	GCATC	3 cut(s)	193, 412, 440
Bpu1102I	GCTNAGC	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	118, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	118, 247
BseGI	GGATG	2 cut(s)	78, 427
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	3 cut(s)	284, 316, 415
BshFI	GGCC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	208, 366
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	111
BsoBI	CYCGRG	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	4, 47
Bsp1720I	GCTNAGC	1 cut(s)	401
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	3 cut(s)	285, 315, 414
BspLI	GGNNCC	1 cut(s)	112
BspPI	GGATC	2 cut(s)	12, 42
BssECI	CCNNGG	2 cut(s)	118, 247
BssMI	GATC	2 cut(s)	4, 47
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	157, 460
Bst6I	CTCTTC	1 cut(s)	319
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	133, 163
BstDEI	CTNAG	3 cut(s)	293, 302, 401
BstF5I	GGATG	2 cut(s)	78, 427
BstKTI	GATC	2 cut(s)	7, 50
BstMAI	GTCTC	2 cut(s)	208, 366
BstMBI	GATC	2 cut(s)	4, 47
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 141, 414
BstSFI	CTRYAG	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	111
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	78, 427
Cac8I	GCNNGC	2 cut(s)	133, 163
CaiI	CAGNNNCTG	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	110, 150
CseI	GACGC	4 cut(s)	112, 124, 268, 414
CviAII	CATG	2 cut(s)	316, 442
CviJI	RGCY	5 cut(s)	111, 255, 265, 352, 400
CviKI_1	RGCY	5 cut(s)	111, 255, 265, 352, 400
DdeI	CTNAG	3 cut(s)	293, 302, 401
DpnI	GATC	2 cut(s)	6, 49
DpnII	GATC	2 cut(s)	4, 47
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
EciI	GGCGGA	3 cut(s)	185, 272, 423
Eco130I	CCWWGG	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	2 cut(s)	319, 445
FaiI	YATR	3 cut(s)	190, 317, 443
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	2 cut(s)	315, 441
FauI	CCCGC	3 cut(s)	170, 386, 410
FblI	GTMKAC	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	129, 142, 253, 406
FokI	GGATG	2 cut(s)	65, 434
Fsp4HI	GCNGC	4 cut(s)	129, 142, 253, 406
GluI	GCNGC	4 cut(s)	129, 142, 253, 406
HaeIII	GGCC	1 cut(s)	111
HgaI	GACGC	4 cut(s)	112, 124, 268, 414
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	319, 445
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HinfI	GANTC	6 cut(s)	170, 295, 300, 308, 327, 334
Hpy166II	GTNNAC	2 cut(s)	153, 299
Hpy188I	TCNGA	3 cut(s)	294, 313, 323
Hpy188III	TCNNGA	3 cut(s)	27, 331, 338
Hpy8I	GTNNAC	2 cut(s)	153, 299
Hpy99I	CGWCG	5 cut(s)	89, 128, 161, 239, 242
HpyAV	CCTTC	1 cut(s)	225
HpyCH4III	ACNGT	2 cut(s)	157, 460
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 141, 414
HpyF3I	CTNAG	3 cut(s)	293, 302, 401
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	319, 445
Kzo9I	GATC	2 cut(s)	4, 47
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	6 cut(s)	133, 145, 163, 256, 300, 316
LweI	GCATC	3 cut(s)	193, 412, 440
MaeII	ACGT	1 cut(s)	201
MalI	GATC	2 cut(s)	6, 49
MboI	GATC	2 cut(s)	4, 47
MboII	GAAGA	4 cut(s)	49, 210, 336, 426
MflI	RGATCY	1 cut(s)	47
MlyI	GAGTC	6 cut(s)	164, 294, 302, 304, 328, 336
MspA1I	CMGCKG	1 cut(s)	405
MwoI	GCNNNNNNNGC	3 cut(s)	108, 141, 414
NdeII	GATC	2 cut(s)	4, 47
NlaIII	CATG	2 cut(s)	319, 445
NlaIV	GGNNCC	1 cut(s)	112
NmeAIII	GCCGAG	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 165
PflFI	GACNNNGTC	1 cut(s)	317
PkrI	GCNGC	4 cut(s)	130, 143, 254, 407
PleI	GAGTC	6 cut(s)	164, 294, 302, 303, 328, 335
PpsI	GAGTC	6 cut(s)	164, 294, 302, 303, 328, 335
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	2 cut(s)	110, 150
PstNI	CAGNNNCTG	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	317
SalI	GTCGAC	1 cut(s)	297
SatI	GCNGC	4 cut(s)	129, 142, 253, 406
Sau3AI	GATC	2 cut(s)	4, 47
Sau96I	GGNCC	2 cut(s)	110, 150
SchI	GAGTC	6 cut(s)	164, 294, 302, 304, 328, 336
SetI	ASST	4 cut(s)	204, 348, 354, 415
SfaNI	GCATC	3 cut(s)	193, 412, 440
SfcI	CTRYAG	1 cut(s)	268
SinI	GGWCC	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	157, 460
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	3 cut(s)	87, 105, 298
TauI	GCSGC	4 cut(s)	131, 144, 255, 408
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	1 cut(s)	214
Tth111I	GACNNNGTC	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.