Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007222

Physical Location & Seq

Genomic Coordinates Reverse (-)

19668964 .. 19669920

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAGACATTAGTTGTGAAATGTTTCCTTCTATTGGCTCTTGTATGTAGCTGCAGAGCAGCAGATTCAATATGGCAACTCTGCAACACAAATTCAAACATCTCAGCAAGCAGCCAAGTCTCCAAGAACATCGATTCTCTTCTCGCGACGCTTGTCTCAAAGACTCCTTCAAAAGGTTTCAAGACCACAACTTCTTCAAGTTACAACAACAAAGAGAAAGTGTATGGACTTGCTCAATGTAGAGGAGATATCAGCAATACCGATTGCTCCACGTGTATCCAAGACGCGGCCAAGAAAATCCGTGAAGTGTGTCAGAACCAATCCGACTCAAGGATCTTGTACGATTTCTGCTTCTTACGTTATAGCCAAGAGAATTTCATAGGGAAGCTTGACACGGGGGCTGGTCTTATATACTTCAACGTCGCTAACGTAACCGAAATCGACCCCAAAAAGTTCGATAATGAGCTCGGGGCACTCTTTGACAAAATTAGGTCTGAGGCTGTTTTACCTAAGAATAAAGGTTTAGGTAAAGGTAAGACAAAATTGACACCTTTTGTGACACTAAACGGTTTGGTCCAATGCACGAGAGACTTAAGCGAATTGGATTGCGCTCAATGCTTTGCAACTGCGGTCGGGAGCTTCATGACAACTTGCCACAACAAGAAAGGTTGTCGTGTTTTGTATAGTAGTTGCTATGTCCGGTACGAGTTTTATCCGTTTTACTTCCCTCTTGATCCGGCTAAAACCGGTCCTAGTGTTGGTAGAATTTCTTCCGTTCATCTCTCTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

263

Amino Acids

29.0

Weight (kDa)

8.9

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	28 - 123	2.3e-21	Salt stress response/antifungal
Stress-antifung	PF01657	148 - 237	7.3e-13	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48540
fragaria_vesca	FvH4_2g17970
malus_domestica	MD05G1163600.v1.1 MD10G1153400.v1.1
prunus_persica	Prupe.8G192200_v2.0.a1
pyrus_communis	pycom10g13230
rosa_chinensis	RchiOBHm_Chr6g0283211 RchiOBHm_Chr6g0283271
rosa_laevigata	RLG00000012835 RLG00000012836
rosa_multiflora	Rmu_sc0006459.1_g000002 Rmu_sc0006459.1_g000014 Rmu_sc0013038.1_g000018
rosa_roxburghii	Rroxscaffold_7G00185620 Rroxscaffold_7G00185640
rosa_rugosa	Rorug06G0152600
rosa_samantha	Rh6AG265100 Rh6AG265200 Rh6BG268000 Rh6BG268200 Rh6CG267200 Rh6CG267400 Rh6DG260400 Rh6DG260900
rosa_wichuraiana	Rw6G022980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	146, 287
AciI	CCGC	2 cut(s)	287, 629
AclWI	GGATC	2 cut(s)	341, 728
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	3 cut(s)	91, 373, 765
AcvI	CACGTG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	341, 704
AfiI	CCNNNNNNNGG	5 cut(s)	34, 173, 286, 330, 758
AflII	CTTAAG	1 cut(s)	592
AflIII	ACRYGT	1 cut(s)	272
AgeI	ACCGGT	1 cut(s)	746
AgsI	TTSAA	6 cut(s)	69, 96, 171, 181, 198, 418
AluBI	AGCT	4 cut(s)	51, 388, 466, 639
AluI	AGCT	4 cut(s)	51, 388, 466, 639
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	3 cut(s)	124, 160, 582
AlwI	GGATC	2 cut(s)	341, 728
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	3 cut(s)	51, 59, 111
ApoI	RAATTY	3 cut(s)	91, 373, 765
AsiGI	ACCGGT	1 cut(s)	746
Asp700I	GAANNNNTTC	2 cut(s)	23, 769
AspLEI	GCGC	1 cut(s)	611
AspS9I	GGNCC	2 cut(s)	574, 749
AvaI	CYCGRG	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	574, 749
BaeGI	GKGCMC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	468
BarI	GAAGNNNNNNTAC	2 cut(s)	754, 786
BauI	CACGAG	1 cut(s)	583
BbrPI	CACGTG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	3 cut(s)	38, 71, 123
BciVI	GTATCC	1 cut(s)	287
BcoDI	GTCTC	3 cut(s)	124, 160, 582
BfaI	CTAG	1 cut(s)	753
BfmI	CTRYAG	1 cut(s)	52
BfrI	CTTAAG	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	287
BisI	GCNGC	4 cut(s)	52, 60, 112, 288
BlsI	GCNGC	4 cut(s)	53, 61, 113, 289
Bme18I	GGWCC	2 cut(s)	574, 749
BmeT110I	CYCGRG	1 cut(s)	467
BmgT120I	GGNCC	2 cut(s)	574, 749
BoxI	GACNNNNGTC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	313
Bsa29I	ATCGAT	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	273
BsaWI	WCCGGW	2 cut(s)	699, 746
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 173, 286, 330, 758
Bse118I	RCCGGY	1 cut(s)	746
BseCI	ATCGAT	1 cut(s)	132
BseLI	CCNNNNNNNGG	5 cut(s)	34, 173, 286, 330, 758
BseMII	CTCAG	2 cut(s)	117, 486
BseRI	GAGGAG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	3 cut(s)	38, 71, 123
Bsh1236I	CGCG	2 cut(s)	146, 287
Bsh1285I	CGRYCG	1 cut(s)	633
BshFI	GGCC	1 cut(s)	290
BshTI	ACCGGT	1 cut(s)	746
BshVI	ATCGAT	1 cut(s)	132
BsiEI	CGRYCG	1 cut(s)	633
BsiHKAI	GWGCWC	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	3 cut(s)	700, 737, 747
BslI	CCNNNNNNNGG	5 cut(s)	34, 173, 286, 330, 758
BsmAI	GTCTC	3 cut(s)	124, 160, 582
BsnI	GGCC	1 cut(s)	290
BsoBI	CYCGRG	1 cut(s)	467
Bsp1286I	GDGCHC	2 cut(s)	468, 475
Bsp143I	GATC	2 cut(s)	333, 733
Bsp68I	TCGCGA	1 cut(s)	146
BspACI	CCGC	2 cut(s)	287, 629
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	2 cut(s)	116, 487
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	2 cut(s)	146, 287
BspHI	TCATGA	1 cut(s)	642
BspMAI	CTGCAG	1 cut(s)	56
BspPI	GGATC	2 cut(s)	341, 728
BspTI	CTTAAG	1 cut(s)	592
BsrFI	RCCGGY	1 cut(s)	746
BssAI	RCCGGY	1 cut(s)	746
BssMI	GATC	2 cut(s)	333, 733
BssSI	CACGAG	1 cut(s)	583
Bst2BI	CACGAG	1 cut(s)	583
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	592
BstBAI	YACGTR	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	103, 495, 510
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstFNI	CGCG	2 cut(s)	146, 287
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	2 cut(s)	336, 736
BstMAI	GTCTC	3 cut(s)	124, 160, 582
BstMBI	GATC	2 cut(s)	333, 733
BstMCI	CGRYCG	1 cut(s)	633
BstMWI	GCNNNNNNNGC	1 cut(s)	615
BstPAI	GACNNNNGTC	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	475
BstUI	CGCG	2 cut(s)	146, 287
BstV1I	GCAGC	3 cut(s)	38, 71, 123
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
Bsu15I	ATCGAT	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	290
BsuTUI	ATCGAT	1 cut(s)	132
BtuMI	TCGCGA	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	642
CfoI	GCGC	1 cut(s)	611
Cfr10I	RCCGGY	1 cut(s)	746
Cfr13I	GGNCC	2 cut(s)	574, 749
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	2 cut(s)	157, 293
Csp6I	GTAC	2 cut(s)	340, 703
CspAI	ACCGGT	1 cut(s)	746
CviAII	CATG	1 cut(s)	643
CviQI	GTAC	2 cut(s)	340, 703
DdeI	CTNAG	3 cut(s)	103, 495, 510
DpnI	GATC	2 cut(s)	335, 735
DpnII	GATC	2 cut(s)	333, 733
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	574, 749
Eco53kI	GAGCTC	1 cut(s)	466
Eco72I	CACGTG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	467
EcoICRI	GAGCTC	1 cut(s)	466
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	468
FaeI	CATG	1 cut(s)	646
FatI	CATG	1 cut(s)	642
Fnu4HI	GCNGC	4 cut(s)	52, 60, 112, 288
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	4 cut(s)	52, 60, 112, 288
FspBI	CTAG	1 cut(s)	753
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	4 cut(s)	52, 60, 112, 288
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	3 cut(s)	700, 737, 747
HgaI	GACGC	2 cut(s)	157, 293
HhaI	GCGC	1 cut(s)	611
Hin1II	CATG	1 cut(s)	646
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	4 cut(s)	65, 134, 163, 326
HpaII	CCGG	3 cut(s)	700, 737, 747
Hpy188I	TCNGA	3 cut(s)	315, 325, 496
Hpy188III	TCNNGA	5 cut(s)	145, 181, 634, 643, 731
Hpy99I	CGWCG	2 cut(s)	151, 425
HpyAV	CCTTC	2 cut(s)	38, 177
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4IV	ACGT	4 cut(s)	272, 358, 420, 429
HpyCH4V	TGCA	4 cut(s)	54, 84, 582, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	615
HpyF3I	CTNAG	3 cut(s)	103, 495, 510
HpySE526I	ACGT	4 cut(s)	272, 358, 420, 429
Hsp92II	CATG	1 cut(s)	646
HspAI	GCGC	1 cut(s)	609
Kzo9I	GATC	2 cut(s)	333, 733
LmnI	GCTCC	2 cut(s)	272, 636
LpnPI	CCDG	4 cut(s)	387, 713, 750, 760
Lsp1109I	GCAGC	3 cut(s)	38, 71, 123
MaeI	CTAG	1 cut(s)	753
MaeII	ACGT	4 cut(s)	272, 358, 420, 429
MaeIII	GTNAC	3 cut(s)	200, 430, 556
MalI	GATC	2 cut(s)	335, 735
MboI	GATC	2 cut(s)	333, 733
MboII	GAAGA	4 cut(s)	16, 131, 186, 762
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	2 cut(s)	468, 475
MluCI	AATT	6 cut(s)	91, 373, 486, 542, 599, 765
MlyI	GAGTC	2 cut(s)	157, 320
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	3 cut(s)	236, 490, 738
MroXI	GAANNNNTTC	2 cut(s)	23, 769
MseI	TTAA	1 cut(s)	593
MspCI	CTTAAG	1 cut(s)	592
MspI	CCGG	3 cut(s)	700, 737, 747
MvnI	CGCG	2 cut(s)	146, 287
MwoI	GCNNNNNNNGC	1 cut(s)	615
NdeII	GATC	2 cut(s)	333, 733
NlaIII	CATG	1 cut(s)	646
NmuCI	GTSAC	1 cut(s)	556
NruI	TCGCGA	1 cut(s)	146
PagI	TCATGA	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PdmI	GAANNNNTTC	2 cut(s)	23, 769
PfeI	GAWTC	2 cut(s)	65, 134
PinAI	ACCGGT	1 cut(s)	746
PkrI	GCNGC	4 cut(s)	53, 61, 113, 289
PleI	GAGTC	2 cut(s)	157, 320
PmaCI	CACGTG	1 cut(s)	273
PmlI	CACGTG	1 cut(s)	273
PpsI	GAGTC	2 cut(s)	157, 320
Ppu21I	YACGTR	1 cut(s)	273
PshAI	GACNNNNGTC	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	468
PspCI	CACGTG	1 cut(s)	273
PspPI	GGNCC	2 cut(s)	574, 749
PstI	CTGCAG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	333
RruI	TCGCGA	1 cut(s)	146
RsaI	GTAC	2 cut(s)	341, 704
RsaNI	GTAC	2 cut(s)	340, 703
SacI	GAGCTC	1 cut(s)	468
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	4 cut(s)	52, 60, 112, 288
Sau3AI	GATC	2 cut(s)	333, 733
Sau96I	GGNCC	2 cut(s)	574, 749
SchI	GAGTC	2 cut(s)	157, 320
SduI	GDGCHC	2 cut(s)	468, 475
SfcI	CTRYAG	1 cut(s)	52
SinI	GGWCC	2 cut(s)	574, 749
SmlI	CTYRAG	2 cut(s)	328, 592
SmoI	CTYRAG	2 cut(s)	328, 592
Sse9I	AATT	6 cut(s)	91, 373, 486, 542, 599, 765
SsiI	CCGC	2 cut(s)	287, 629
SspMI	CTAG	1 cut(s)	753
SstI	GAGCTC	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	569
TaiI	ACGT	4 cut(s)	275, 361, 423, 432
TaqI	TCGA	3 cut(s)	132, 441, 456
TasI	AATT	6 cut(s)	91, 373, 486, 542, 599, 765
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	2 cut(s)	65, 134
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	3 cut(s)	51, 59, 111
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	4 cut(s)	17, 367, 631, 767
TspGWI	ACGGA	4 cut(s)	290, 705, 763, 777
Vha464I	CTTAAG	1 cut(s)	592
VpaK11BI	GGWCC	2 cut(s)	574, 749
XagI	CCTNNNNNAGG	1 cut(s)	171
XapI	RAATTY	3 cut(s)	91, 373, 765
XmnI	GAANNNNTTC	2 cut(s)	23, 769
XspI	CTAG	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.