Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007222

Physical Location & Seq

Genomic Coordinates Reverse (-)

18628480 .. 18629200

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G192200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

GCAGAATCTCAAGACCCTTTGGGAGATTTCTGCAACGAAGATAGTACTAAAATAAGTAATGCTAGCCAAATATCAGCAAATATTGATACTTTATTGGCTCAATTGGTGCCCAAAACTGCTTCACTTGGTTTTTTTGCTACTTCCTATGGCAAAGGCCAAGACCGAGTCTTTGGCCTGGCTCAATGCAGAGGGGATGTTGTGGGCAGCAAAGACTGCTCTAGTTGCATCCAAGACGCTGCAAAGCAAATCCGCAAGCGCTGTCCAGACCAGGCAGATGCTCGAATTTGGTACGACTATTGCTTCTTGAGAGCTTCATTGGGAGGTATATTGTACGGGAATGTCGATAATGTGACCGATCCCGAGAGCTTCAACAAAGAACTAGGAGCTCTGGTGGACAAGATTGAGGAACAAGCTGTTGTGCCAAAGAATGGAGGACTTGGGAAAGGTGAGACCAAGCTGTCACCATTTTTGACACTATATGCTTTGGTGCAGTGCACAAGGGACTTGTCTCAGCTAGACTGTTCTCAGTGCTTGGCCATTGCAGTGGGAAATTTCGGAACCTTTTGTGACAACCGCAAGGGTTGTAGAGTTCTATATAGCAGCTGTTATGTCAGATATGAGCTCTATCCATTTTTCTTCCCTCTTGATTCAAACAATACCCTGCCTGTGGCTGATAATACTTTAATGGCTGTAGTTTATGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

236

Amino Acids

25.66

Weight (kDa)

4.76

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48540
fragaria_vesca	FvH4_2g17970
malus_domestica	MD05G1163600.v1.1 MD10G1153400.v1.1
prunus_persica	Prupe.8G192200_v2.0.a1
pyrus_communis	pycom10g13230
rosa_chinensis	RchiOBHm_Chr6g0283211 RchiOBHm_Chr6g0283271
rosa_laevigata	RLG00000012835 RLG00000012836
rosa_multiflora	Rmu_sc0006459.1_g000002 Rmu_sc0006459.1_g000014 Rmu_sc0013038.1_g000018
rosa_roxburghii	Rroxscaffold_7G00185620 Rroxscaffold_7G00185640
rosa_rugosa	Rorug06G0152600
rosa_samantha	Rh6AG265100 Rh6AG265200 Rh6BG268000 Rh6BG268200 Rh6CG267200 Rh6CG267400 Rh6DG260400 Rh6DG260900
rosa_wichuraiana	Rw6G022980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	106
AccB7I	CCANNNNNTGG	1 cut(s)	428
AciI	CCGC	2 cut(s)	250, 574
AclWI	GGATC	2 cut(s)	350, 695
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	2 cut(s)	282, 550
AfaI	GTAC	3 cut(s)	46, 290, 332
AfeI	AGCGCT	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	428, 667
AgsI	TTSAA	2 cut(s)	370, 651
AjnI	CCWGG	2 cut(s)	174, 267
AluBI	AGCT	8 cut(s)	311, 366, 386, 413, 457, 514, 603, 622
AluI	AGCT	8 cut(s)	311, 366, 386, 413, 457, 514, 603, 622
Alw21I	GWGCWC	3 cut(s)	388, 497, 624
Alw26I	GTCTC	2 cut(s)	443, 513
Alw44I	GTGCAC	1 cut(s)	493
AlwI	GGATC	2 cut(s)	350, 695
Ama87I	CYCGRG	1 cut(s)	359
Aor51HI	AGCGCT	1 cut(s)	257
AoxI	GGCC	3 cut(s)	154, 172, 534
ApaLI	GTGCAC	1 cut(s)	493
ApeKI	GCWGC	3 cut(s)	204, 236, 600
ApoI	RAATTY	2 cut(s)	282, 550
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspLEI	GCGC	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	453, 458
AsuNHI	GCTAGC	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	359
BaeGI	GKGCMC	2 cut(s)	111, 497
BalI	TGGCCA	1 cut(s)	536
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	2 cut(s)	388, 624
Bbv12I	GWGCWC	3 cut(s)	388, 497, 624
BbvI	GCAGC	3 cut(s)	216, 223, 612
BciT130I	CCWGG	2 cut(s)	176, 269
BcoDI	GTCTC	2 cut(s)	443, 513
BfaI	CTAG	4 cut(s)	63, 219, 380, 515
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	259
BisI	GCNGC	3 cut(s)	205, 237, 601
BlsI	GCNGC	3 cut(s)	206, 238, 602
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	2 cut(s)	176, 269
BmeT110I	CYCGRG	1 cut(s)	359
BmiI	GGNNCC	2 cut(s)	108, 559
BmrFI	CCNGG	2 cut(s)	176, 269
BmsI	GCATC	2 cut(s)	234, 265
BmtI	GCTAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	325
BsaI	GGTCTC	1 cut(s)	443
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	428, 667
Bse3DI	GCAATG	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	176, 269
BseGI	GGATG	2 cut(s)	199, 225
BseLI	CCNNNNNNNGG	2 cut(s)	428, 667
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	2 cut(s)	524, 539
BseSI	GKGCMC	2 cut(s)	111, 497
BseXI	GCAGC	3 cut(s)	216, 223, 612
BsgI	GTGCAG	1 cut(s)	509
BshFI	GGCC	3 cut(s)	156, 174, 536
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	3 cut(s)	388, 497, 624
BsiHKCI	CYCGRG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	428, 667
BsmAI	GTCTC	2 cut(s)	443, 513
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	3 cut(s)	156, 174, 536
Bso31I	GGTCTC	1 cut(s)	443
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	4 cut(s)	111, 388, 497, 624
Bsp143I	GATC	2 cut(s)	355, 700
BspACI	CCGC	2 cut(s)	250, 574
BspANI	GGCC	3 cut(s)	156, 174, 536
BspCNI	CTCAG	2 cut(s)	523, 538
BspLI	GGNNCC	2 cut(s)	108, 559
BspOI	GCTAGC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	350, 695
BspT107I	GGYRCC	1 cut(s)	106
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	537
BssMI	GATC	2 cut(s)	355, 700
Bst2UI	CCWGG	2 cut(s)	176, 269
Bst4CI	ACNGT	1 cut(s)	521
BstAPI	GCANNNNNTGC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	64, 254
BstDEI	CTNAG	2 cut(s)	510, 525
BstF5I	GGATG	2 cut(s)	199, 225
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	2 cut(s)	358, 703
BstMAI	GTCTC	2 cut(s)	443, 513
BstMBI	GATC	2 cut(s)	355, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 222
BstNI	CCWGG	2 cut(s)	176, 269
BstSCI	CCNGG	2 cut(s)	174, 267
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	2 cut(s)	111, 497
BstV1I	GCAGC	3 cut(s)	216, 223, 612
BstXI	CCANNNNNNTGG	1 cut(s)	544
BsuRI	GGCC	3 cut(s)	156, 174, 536
BtsCI	GGATG	2 cut(s)	199, 225
BtsI	GCAGTG	2 cut(s)	497, 549
BtsIMutI	CAGTG	3 cut(s)	497, 533, 549
Cac8I	GCNNGC	2 cut(s)	64, 254
CfoI	GCGC	1 cut(s)	258
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	3 cut(s)	45, 289, 331
CviQI	GTAC	3 cut(s)	45, 289, 331
DdeI	CTNAG	2 cut(s)	510, 525
DpnI	GATC	2 cut(s)	357, 702
DpnII	GATC	2 cut(s)	355, 700
DrdI	GACNNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	534
Ecl136II	GAGCTC	2 cut(s)	386, 622
Eco24I	GRGCYC	2 cut(s)	388, 624
Eco31I	GGTCTC	1 cut(s)	443
Eco47III	AGCGCT	1 cut(s)	257
Eco53kI	GAGCTC	2 cut(s)	386, 622
Eco88I	CYCGRG	1 cut(s)	359
EcoICRI	GAGCTC	2 cut(s)	386, 622
EcoRII	CCWGG	2 cut(s)	174, 267
EcoT38I	GRGCYC	2 cut(s)	388, 624
FaqI	GGGAC	1 cut(s)	515
Fnu4HI	GCNGC	3 cut(s)	205, 237, 601
FokI	GGATG	2 cut(s)	206, 212
FriOI	GRGCYC	2 cut(s)	388, 624
Fsp4HI	GCNGC	3 cut(s)	205, 237, 601
FspBI	CTAG	4 cut(s)	63, 219, 380, 515
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	3 cut(s)	205, 237, 601
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	3 cut(s)	156, 174, 536
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	258
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	5, 165, 647
HphI	GGTGA	2 cut(s)	453, 458
Hpy166II	GTNNAC	2 cut(s)	394, 495
Hpy188I	TCNGA	2 cut(s)	557, 614
Hpy188III	TCNNGA	5 cut(s)	11, 263, 304, 359, 644
Hpy8I	GTNNAC	2 cut(s)	394, 495
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4V	TGCA	7 cut(s)	33, 186, 225, 239, 490, 495, 542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 222
HpyF3I	CTNAG	2 cut(s)	510, 525
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	355, 700
LmnI	GCTCC	1 cut(s)	383
LpnPI	CCDG	8 cut(s)	161, 188, 254, 276, 281, 374, 674, 678
Lsp1109I	GCAGC	3 cut(s)	216, 223, 612
LweI	GCATC	2 cut(s)	234, 265
MaeI	CTAG	4 cut(s)	63, 219, 380, 515
MaeIII	GTNAC	3 cut(s)	349, 459, 566
MalI	GATC	2 cut(s)	357, 702
MboI	GATC	2 cut(s)	355, 700
MboII	GAAGA	2 cut(s)	50, 628
MfeI	CAATTG	1 cut(s)	101
MhlI	GDGCHC	4 cut(s)	111, 388, 497, 624
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	3 cut(s)	101, 282, 550
MluNI	TGGCCA	1 cut(s)	536
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	5 cut(s)	182, 314, 397, 425, 651
Mox20I	TGGCCA	1 cut(s)	536
MscI	TGGCCA	1 cut(s)	536
MseI	TTAA	1 cut(s)	683
MslI	CAYNNNNRTG	1 cut(s)	542
Msp20I	TGGCCA	1 cut(s)	536
MspA1I	CMGCKG	1 cut(s)	603
MspR9I	CCNGG	2 cut(s)	176, 269
MunI	CAATTG	1 cut(s)	101
MvaI	CCWGG	2 cut(s)	176, 269
MwoI	GCNNNNNNNGC	2 cut(s)	213, 222
NdeII	GATC	2 cut(s)	355, 700
NheI	GCTAGC	1 cut(s)	62
NlaIV	GGNNCC	2 cut(s)	108, 559
NmuCI	GTSAC	3 cut(s)	349, 459, 566
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	5, 647
PflFI	GACNNNGTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	428
PkrI	GCNGC	3 cut(s)	206, 238, 602
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp124BI	GAGCTC	2 cut(s)	388, 624
Psp6I	CCWGG	2 cut(s)	174, 267
PspGI	CCWGG	2 cut(s)	174, 267
PspN4I	GGNNCC	2 cut(s)	108, 559
PsyI	GACNNNGTC	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	603
RsaI	GTAC	3 cut(s)	46, 290, 332
RsaNI	GTAC	3 cut(s)	45, 289, 331
RseI	CAYNNNNRTG	1 cut(s)	542
SacI	GAGCTC	2 cut(s)	388, 624
SaqAI	TTAA	1 cut(s)	683
SatI	GCNGC	3 cut(s)	205, 237, 601
Sau3AI	GATC	2 cut(s)	355, 700
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	176, 269
SduI	GDGCHC	4 cut(s)	111, 388, 497, 624
SfaNI	GCATC	2 cut(s)	234, 265
SfcI	CTRYAG	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	542
SmlI	CTYRAG	2 cut(s)	9, 304
SmoI	CTYRAG	2 cut(s)	9, 304
Sse9I	AATT	3 cut(s)	101, 282, 550
SsiI	CCGC	2 cut(s)	250, 574
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	4 cut(s)	63, 219, 380, 515
SstI	GAGCTC	2 cut(s)	388, 624
StyD4I	CCNGG	2 cut(s)	174, 267
TaaI	ACNGT	1 cut(s)	521
TaqI	TCGA	2 cut(s)	280, 342
TaqII	GACCGA	2 cut(s)	177, 368
TasI	AATT	3 cut(s)	101, 282, 550
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	5, 647
Tru1I	TTAA	1 cut(s)	683
Tru9I	TTAA	1 cut(s)	683
TscAI	CASTG	3 cut(s)	497, 533, 549
TseFI	GTSAC	3 cut(s)	349, 459, 566
TseI	GCWGC	3 cut(s)	204, 236, 600
Tsp45I	GTSAC	3 cut(s)	349, 459, 566
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	3 cut(s)	497, 533, 549
Tth111I	GACNNNGTC	1 cut(s)	164
Van91I	CCANNNNNTGG	1 cut(s)	428
VneI	GTGCAC	1 cut(s)	493
XapI	RAATTY	2 cut(s)	282, 550
XspI	CTAG	4 cut(s)	63, 219, 380, 515
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.