Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007222

Physical Location & Seq

Genomic Coordinates Reverse (-)

45696425 .. 45697141

Gene Structure 717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG265100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCAGATTTCTACAACAAAGACACTAATATAAGTAAAAGTAGTCAAATCTCAGCAAATATTGATGCTTTACTGGCCGAGTTGGTTTCTGAAACTCCCTCAACTGGCTATTTTGCTACCTCCTATGGCAAAGGCCAAGCTCAAGTCTATGGCTTGGCTCAATGCAGAGGTGATGTTGTGGGAAGCAAAGACTGCTCAAGTTGTATTCAAGACGCTGCAAAAGAAATCCGCCAGCGTTGTCCAGACCAAGCAGCTGCAACGATTTGGTATGACTTTTGCTTCTTGAGGTACAGCAACAAGAGTTTCATTGGAGAAGTTGATACGTCTTATGGTATAATCTTCTATAATGTTCAAAATGTAACTGACCCTGAGAAGTTTGTCAAAGAACTAGGAGCTCTGGTGGATAATATTAAAGCACAAGCTGTGGTGCCAAAGAATCTAGGATTTGGGAAAGGTGAGACCAAGCTGTCACCATTGACGACACTCTATGCCTTTGGGCAATGCACAAGGGACTTAGCTAAGCTAGATTGTTCTCAGTGCTTGGCCATTGCAGTGGGAAACTACGAAACCATTTGTGGCAATCGAAGGGGATGTCGAGTTCTGTATGGTAGTTGCTATGTCAGATATGAGCTCTATCCAATTTTCTACCCTGTTGGTTCCAACAGTAGTATGAATGTTGTGGCTGATGAAACTAAAATGATTCTAGTCAGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

238

Amino Acids

26.11

Weight (kDa)

5.6

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	9 - 100	1.2e-23	Salt stress response/antifungal
Stress-antifung	PF01657	118 - 211	1.3e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48540
fragaria_vesca	FvH4_2g17970
malus_domestica	MD05G1163600.v1.1 MD10G1153400.v1.1
prunus_persica	Prupe.8G192200_v2.0.a1
pyrus_communis	pycom10g13230
rosa_chinensis	RchiOBHm_Chr6g0283211 RchiOBHm_Chr6g0283271
rosa_laevigata	RLG00000012835 RLG00000012836
rosa_multiflora	Rmu_sc0006459.1_g000002 Rmu_sc0006459.1_g000014 Rmu_sc0013038.1_g000018
rosa_roxburghii	Rroxscaffold_7G00185620 Rroxscaffold_7G00185640
rosa_rugosa	Rorug06G0152600
rosa_samantha	Rh6AG265100 Rh6AG265200 Rh6BG268000 Rh6BG268200 Rh6CG267200 Rh6CG267400 Rh6DG260400 Rh6DG260900
rosa_wichuraiana	Rw6G022980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	466
AccB1I	GGYRCC	1 cut(s)	427
AciI	CCGC	1 cut(s)	229
AcoI	YGGCCR	2 cut(s)	75, 543
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	209, 353
AloI	GAACNNNNNNTCC	2 cut(s)	582, 614
AluBI	AGCT	8 cut(s)	140, 254, 395, 422, 466, 518, 523, 631
AluI	AGCT	8 cut(s)	140, 254, 395, 422, 466, 518, 523, 631
Alw21I	GWGCWC	2 cut(s)	397, 633
Alw26I	GTCTC	1 cut(s)	452
AoxI	GGCC	3 cut(s)	75, 133, 543
ApeKI	GCWGC	3 cut(s)	215, 251, 254
ArsI	GACNNNNNNTTYG	2 cut(s)	577, 609
AsuHPI	GGTGA	3 cut(s)	182, 462, 467
BalI	TGGCCA	1 cut(s)	545
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	2 cut(s)	397, 633
Bbv12I	GWGCWC	2 cut(s)	397, 633
BbvI	GCAGC	3 cut(s)	202, 241, 263
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	4 cut(s)	389, 440, 524, 704
BisI	GCNGC	3 cut(s)	216, 252, 255
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	3 cut(s)	217, 253, 256
BmiI	GGNNCC	2 cut(s)	429, 658
BmsI	GCATC	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	3 cut(s)	126, 181, 304
BsaI	GGTCTC	1 cut(s)	452
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	78, 109
Bse3DI	GCAATG	2 cut(s)	506, 546
BseGI	GGATG	1 cut(s)	596
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	2 cut(s)	506, 546
BseMII	CTCAG	3 cut(s)	66, 360, 548
BseNI	ACTGG	2 cut(s)	78, 109
BseXI	GCAGC	3 cut(s)	202, 241, 263
BshFI	GGCC	3 cut(s)	77, 135, 545
BshNI	GGYRCC	1 cut(s)	427
BsiHKAI	GWGCWC	2 cut(s)	397, 633
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	3 cut(s)	77, 135, 545
Bso31I	GGTCTC	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	397, 633
Bsp1720I	GCTNAGC	1 cut(s)	519
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	3 cut(s)	77, 135, 545
BspCNI	CTCAG	3 cut(s)	65, 361, 547
BspLI	GGNNCC	2 cut(s)	429, 658
BspT107I	GGYRCC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	452
BsrDI	GCAATG	2 cut(s)	506, 546
BsrI	ACTGG	2 cut(s)	78, 109
Bst4CI	ACNGT	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	5 cut(s)	52, 369, 514, 519, 534
BstF5I	GGATG	1 cut(s)	596
BstMAI	GTCTC	1 cut(s)	452
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 192
BstV1I	GCAGC	3 cut(s)	202, 241, 263
BstXI	CCANNNNNNTGG	1 cut(s)	553
BsuRI	GGCC	3 cut(s)	77, 135, 545
BtsCI	GGATG	1 cut(s)	596
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	542, 558
Cac8I	GCNNGC	1 cut(s)	233
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	289
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	5 cut(s)	52, 369, 514, 519, 534
DrdI	GACNNNNNNGTC	1 cut(s)	466
DseDI	GACNNNNNNGTC	1 cut(s)	466
EaeI	YGGCCR	2 cut(s)	75, 543
EciI	GGCGGA	1 cut(s)	218
Ecl136II	GAGCTC	2 cut(s)	395, 631
Eco24I	GRGCYC	2 cut(s)	397, 633
Eco31I	GGTCTC	1 cut(s)	452
Eco53kI	GAGCTC	2 cut(s)	395, 631
EcoICRI	GAGCTC	2 cut(s)	395, 631
EcoT38I	GRGCYC	2 cut(s)	397, 633
FaqI	GGGAC	1 cut(s)	524
Fnu4HI	GCNGC	3 cut(s)	216, 252, 255
FokI	GGATG	1 cut(s)	603
FriOI	GRGCYC	2 cut(s)	397, 633
Fsp4HI	GCNGC	3 cut(s)	216, 252, 255
FspBI	CTAG	4 cut(s)	389, 440, 524, 704
GluI	GCNGC	3 cut(s)	216, 252, 255
HaeIII	GGCC	3 cut(s)	77, 135, 545
HgaI	GACGC	1 cut(s)	221
HinfI	GANTC	2 cut(s)	436, 700
HphI	GGTGA	3 cut(s)	182, 462, 467
Hpy188I	TCNGA	2 cut(s)	91, 623
Hpy188III	TCNNGA	3 cut(s)	209, 242, 283
HpyAV	CCTTC	1 cut(s)	579
HpyCH4III	ACNGT	1 cut(s)	665
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	5 cut(s)	165, 218, 257, 504, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 192
HpyF3I	CTNAG	5 cut(s)	52, 369, 514, 519, 534
HpySE526I	ACGT	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	7 cut(s)	59, 90, 245, 255, 381, 383, 663
Lsp1109I	GCAGC	3 cut(s)	202, 241, 263
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	4 cut(s)	389, 440, 524, 704
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	358, 468
MboII	GAAGA	1 cut(s)	331
MhlI	GDGCHC	2 cut(s)	397, 633
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	1 cut(s)	639
MluNI	TGGCCA	1 cut(s)	545
MmeI	TCCRAC	1 cut(s)	684
MnlI	CCTC	4 cut(s)	109, 130, 161, 279
Mox20I	TGGCCA	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	545
MspA1I	CMGCKG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	74, 192
NlaIV	GGNNCC	2 cut(s)	429, 658
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	436, 700
PkrI	GCNGC	3 cut(s)	217, 253, 256
Psp124BI	GAGCTC	2 cut(s)	397, 633
PspN4I	GGNNCC	2 cut(s)	429, 658
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	551
SacI	GAGCTC	2 cut(s)	397, 633
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	216, 252, 255
SduI	GDGCHC	2 cut(s)	397, 633
SfaNI	GCATC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	3 cut(s)	141, 196, 283
SmoI	CTYRAG	3 cut(s)	141, 196, 283
Sse9I	AATT	1 cut(s)	639
SsiI	CCGC	1 cut(s)	229
SspI	AATATT	2 cut(s)	61, 409
SspMI	CTAG	4 cut(s)	389, 440, 524, 704
SstI	GAGCTC	2 cut(s)	397, 633
TaaI	ACNGT	1 cut(s)	665
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	2 cut(s)	583, 595
TasI	AATT	1 cut(s)	639
TfiI	GAWTC	2 cut(s)	436, 700
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	542, 558
TseFI	GTSAC	1 cut(s)	468
TseI	GCWGC	3 cut(s)	215, 251, 254
Tsp45I	GTSAC	1 cut(s)	468
TspDTI	ATGAA	3 cut(s)	295, 686, 702
TspRI	CASTG	2 cut(s)	542, 558
XspI	CTAG	4 cut(s)	389, 440, 524, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.