Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007222

Physical Location & Seq

Genomic Coordinates Forward (+)

21868052 .. 21871371

Gene Structure 3320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0152600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCGGTGGTGGGCGAAAGCTCTTCGGCTCCGCCGGAACAGAAGCCGGTGATCGTTAGGGTCAAGCGCAAAGCCAACCAGTCTCCAATCGACGCTTTCTGGCTTGAAATCAATGAGAGGCCACCCAAGCGTCCACTTTTGGATTTGGCCAACCTTTCACTCTCTGATTCATCTCCACAAGCAGCAGAAGAATTGAAGGCGAAGAAGGTTTTCGTGCAGCATGTAGAGACTGTAAGCAGCTTTGACACCACCATTGACATTGTCAAATCATTTGTGGACCCTACTACGGATCAAGTGTTTGATAGTAAAACAAAGGGTGAAGAACGGAGACACTCTTTAAAAAATGACAATAAACAAGAGAAGATTTTGTCTAAAGCCAGACAGACGCAAGAGGTTGTAGCAAAAAATGCCCGTTTTGAACAAATATGGAGGAGCCGAAAGGGAAAGACAGAAGAATCCGATAAATTACAGGACATGTGTCATTTCTATGATGTTCTTCGTGTTGATGCCGATGAAAGATCTAATGAACTGAAACAACAGGAAGAGTTATCTTTGGAGGACCAGAGGATTTTGCAGAGTTACTTGCCTCTACTCAGAGAATTCATCCCAAGTGCGGCTTTAGAGGTTGAATCAGATTTGCATGCTCAAAAACAAGAATCTGAAGATGAGTATGTATATGATGTCTATGCTGTGAATGATGAAATGGATATAGCGGATGAAGATTCTTCCCACCCATTTCCTTTAGTGCAAGTTGATGATGAGGATTTCTATGATGTGCCTGATGAATCAGAACATGACACTGAGGATTCAAATGATGAAAACAATCCAAATTTTGATTACCCGGATGAGGAATTTGAAGATGAAGAAGAGGAATCGGACAGTGAAGCATCTGATAATGAATCAAAAGATGAGAGTGCCAGTGACAGATCCTTAGAATCCAAGGATTTAGAGGAACATGTCATTTCAGGAGATGATCTTTCTTTAGATTATGATGATGGTGGTGATGATGGGGATGATGGTGAAAACTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

344

Amino Acids

39.38

Weight (kDa)

4.2

Isoelectric Point (pI)

67.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48540
fragaria_vesca	FvH4_2g17970
malus_domestica	MD05G1163600.v1.1 MD10G1153400.v1.1
prunus_persica	Prupe.8G192200_v2.0.a1
pyrus_communis	pycom10g13230
rosa_chinensis	RchiOBHm_Chr6g0283211 RchiOBHm_Chr6g0283271
rosa_laevigata	RLG00000012835 RLG00000012836
rosa_multiflora	Rmu_sc0006459.1_g000002 Rmu_sc0006459.1_g000014 Rmu_sc0013038.1_g000018
rosa_roxburghii	Rroxscaffold_7G00185620 Rroxscaffold_7G00185640
rosa_rugosa	Rorug06G0152600
rosa_samantha	Rh6AG265100 Rh6AG265200 Rh6BG268000 Rh6BG268200 Rh6CG267200 Rh6CG267400 Rh6DG260400 Rh6DG260900
rosa_wichuraiana	Rw6G022980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 32, 614, 713
AclWI	GGATC	2 cut(s)	297, 921
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	3 cut(s)	599, 829, 851
AcuI	CTGAAG	1 cut(s)	681
AfiI	CCNNNNNNNGG	3 cut(s)	286, 613, 847
AflIII	ACRYGT	2 cut(s)	474, 955
AgsI	TTSAA	6 cut(s)	107, 196, 419, 629, 810, 857
AluBI	AGCT	2 cut(s)	21, 240
AluI	AGCT	2 cut(s)	21, 240
Alw26I	GTCTC	3 cut(s)	87, 221, 322
AlwI	GGATC	2 cut(s)	297, 921
AoxI	GGCC	2 cut(s)	119, 147
ApeKI	GCWGC	3 cut(s)	182, 217, 237
ApoI	RAATTY	3 cut(s)	599, 829, 851
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	277, 559
AsuC2I	CCSGG	1 cut(s)	842
AsuHPI	GGTGA	4 cut(s)	61, 329, 1013, 1031
AvaII	GGWCC	2 cut(s)	277, 559
BalI	TGGCCA	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	194, 229, 249
BccI	CCATC	3 cut(s)	989, 1001, 1010
BcnI	CCSGG	1 cut(s)	842
BcoDI	GTCTC	3 cut(s)	87, 221, 322
BglII	AGATCT	1 cut(s)	518
BisI	GCNGC	4 cut(s)	183, 218, 238, 615
BlsI	GCNGC	4 cut(s)	184, 219, 239, 616
Bme1390I	CCNGG	1 cut(s)	842
Bme18I	GGWCC	2 cut(s)	277, 559
BmgT120I	GGNCC	2 cut(s)	277, 559
BmiI	GGNNCC	3 cut(s)	30, 279, 434
BmrFI	CCNGG	1 cut(s)	842
BmsI	GCATC	2 cut(s)	496, 896
BoxI	GACNNNNGTC	1 cut(s)	477
BpuMI	CCSGG	1 cut(s)	842
BsaJI	CCNNGG	1 cut(s)	939
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 613, 847
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	3 cut(s)	79, 918, 1031
BseDI	CCNNGG	1 cut(s)	939
BseGI	GGATG	5 cut(s)	603, 721, 850, 1018, 1035
BseLI	CCNNNNNNNGG	3 cut(s)	286, 613, 847
BseMII	CTCAG	2 cut(s)	607, 792
BseNI	ACTGG	3 cut(s)	79, 918, 1031
BseRI	GAGGAG	1 cut(s)	445
BseXI	GCAGC	3 cut(s)	194, 229, 249
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	2 cut(s)	121, 149
BsiSI	CCGG	3 cut(s)	35, 47, 842
BslI	CCNNNNNNNGG	3 cut(s)	286, 613, 847
BsmAI	GTCTC	3 cut(s)	87, 221, 322
BsnI	GGCC	2 cut(s)	121, 149
Bsp143I	GATC	5 cut(s)	51, 289, 518, 926, 973
BspACI	CCGC	4 cut(s)	5, 32, 614, 713
BspANI	GGCC	2 cut(s)	121, 149
BspCNI	CTCAG	2 cut(s)	606, 793
BspLI	GGNNCC	3 cut(s)	30, 279, 434
BspPI	GGATC	2 cut(s)	297, 921
BspQI	GCTCTTC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	3 cut(s)	79, 918, 1031
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	939
BssMI	GATC	5 cut(s)	51, 289, 518, 926, 973
BssT1I	CCWWGG	1 cut(s)	939
Bst4CI	ACNGT	2 cut(s)	232, 881
Bst6I	CTCTTC	3 cut(s)	28, 537, 861
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	3 cut(s)	593, 801, 931
BstF5I	GGATG	5 cut(s)	603, 721, 850, 1018, 1035
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	5 cut(s)	54, 292, 521, 929, 976
BstMAI	GTCTC	3 cut(s)	87, 221, 322
BstMBI	GATC	5 cut(s)	51, 289, 518, 926, 973
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 407
BstNSI	RCATGY	4 cut(s)	224, 478, 644, 959
BstPAI	GACNNNNGTC	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	840
BstV1I	GCAGC	3 cut(s)	194, 229, 249
BstX2I	RGATCY	2 cut(s)	518, 926
BstYI	RGATCY	2 cut(s)	518, 926
BsuRI	GGCC	2 cut(s)	121, 149
BtsCI	GGATG	5 cut(s)	603, 721, 850, 1018, 1035
BtsIMutI	CAGTG	3 cut(s)	798, 886, 925
Cac8I	GCNNGC	1 cut(s)	642
CfoI	GCGC	1 cut(s)	69
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	277, 559
CseI	GACGC	3 cut(s)	101, 119, 394
CviAII	CATG	5 cut(s)	221, 475, 641, 794, 956
DdeI	CTNAG	3 cut(s)	593, 801, 931
DpnI	GATC	5 cut(s)	53, 291, 520, 928, 975
DpnII	GATC	5 cut(s)	51, 289, 518, 926, 973
DraI	TTTAAA	1 cut(s)	339
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	3 cut(s)	28, 537, 861
EarI	CTCTTC	3 cut(s)	28, 537, 861
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	939
Eco47I	GGWCC	2 cut(s)	277, 559
Eco57I	CTGAAG	1 cut(s)	681
EcoRI	GAATTC	1 cut(s)	599
EcoT14I	CCWWGG	1 cut(s)	939
ErhI	CCWWGG	1 cut(s)	939
FaeI	CATG	5 cut(s)	224, 478, 644, 797, 959
FalI	AAGNNNNNCTT	2 cut(s)	601, 633
FatI	CATG	5 cut(s)	220, 474, 640, 793, 955
Fnu4HI	GCNGC	4 cut(s)	183, 218, 238, 615
FokI	GGATG	4 cut(s)	590, 728, 857, 1025
Fsp4HI	GCNGC	4 cut(s)	183, 218, 238, 615
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	4 cut(s)	183, 218, 238, 615
HaeIII	GGCC	2 cut(s)	121, 149
HapII	CCGG	3 cut(s)	35, 47, 842
HgaI	GACGC	3 cut(s)	101, 119, 394
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	5 cut(s)	224, 478, 644, 797, 959
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HpaII	CCGG	3 cut(s)	35, 47, 842
HphI	GGTGA	4 cut(s)	61, 329, 1013, 1031
Hpy166II	GTNNAC	2 cut(s)	134, 277
Hpy188I	TCNGA	8 cut(s)	166, 460, 596, 634, 661, 790, 877, 892
Hpy188III	TCNNGA	1 cut(s)	966
Hpy8I	GTNNAC	2 cut(s)	134, 277
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	190, 199
HpyCH4III	ACNGT	2 cut(s)	232, 881
HpyCH4V	TGCA	4 cut(s)	217, 574, 640, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 407
HpyF3I	CTNAG	3 cut(s)	593, 801, 931
Hsp92II	CATG	5 cut(s)	224, 478, 644, 797, 959
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	5 cut(s)	51, 289, 518, 926, 973
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	34, 432
Lsp1109I	GCAGC	3 cut(s)	194, 229, 249
LweI	GCATC	2 cut(s)	496, 896
MaeIII	GTNAC	2 cut(s)	578, 920
MalI	GATC	5 cut(s)	53, 291, 520, 928, 975
MboI	GATC	5 cut(s)	51, 289, 518, 926, 973
MflI	RGATCY	2 cut(s)	518, 926
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	5 cut(s)	191, 464, 599, 829, 851
MluNI	TGGCCA	1 cut(s)	149
Mox20I	TGGCCA	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	3 cut(s)	35, 47, 842
MspR9I	CCNGG	1 cut(s)	842
MwoI	GCNNNNNNNGC	2 cut(s)	127, 407
NciI	CCSGG	1 cut(s)	842
NdeII	GATC	5 cut(s)	51, 289, 518, 926, 973
NlaIII	CATG	5 cut(s)	224, 478, 644, 797, 959
NlaIV	GGNNCC	3 cut(s)	30, 279, 434
NmuCI	GTSAC	1 cut(s)	920
NspI	RCATGY	4 cut(s)	224, 478, 644, 959
PaeI	GCATGC	1 cut(s)	644
PciI	ACATGT	2 cut(s)	474, 955
PciSI	GCTCTTC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	209
PflFI	GACNNNGTC	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	184, 219, 239, 616
PscI	ACATGT	2 cut(s)	474, 955
PshAI	GACNNNNGTC	1 cut(s)	477
PspN4I	GGNNCC	3 cut(s)	30, 279, 434
PspPI	GGNCC	2 cut(s)	277, 559
PsuI	RGATCY	2 cut(s)	518, 926
PsyI	GACNNNGTC	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	4 cut(s)	183, 218, 238, 615
Sau3AI	GATC	5 cut(s)	51, 289, 518, 926, 973
Sau96I	GGNCC	2 cut(s)	277, 559
ScrFI	CCNGG	1 cut(s)	842
SetI	ASST	6 cut(s)	23, 156, 210, 242, 396, 627
SfaNI	GCATC	2 cut(s)	496, 896
SinI	GGWCC	2 cut(s)	277, 559
SmiMI	CAYNNNNRTG	1 cut(s)	486
SphI	GCATGC	1 cut(s)	644
Sse9I	AATT	5 cut(s)	191, 464, 599, 829, 851
SsiI	CCGC	4 cut(s)	5, 32, 614, 713
StyD4I	CCNGG	1 cut(s)	840
StyI	CCWWGG	1 cut(s)	939
TaaI	ACNGT	2 cut(s)	232, 881
TaqI	TCGA	1 cut(s)	90
TasI	AATT	5 cut(s)	191, 464, 599, 829, 851
TauI	GCSGC	1 cut(s)	617
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	3 cut(s)	805, 886, 925
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	3 cut(s)	182, 217, 237
Tsp45I	GTSAC	1 cut(s)	920
TspGWI	ACGGA	2 cut(s)	302, 340
TspRI	CASTG	3 cut(s)	805, 886, 925
Tth111I	GACNNNGTC	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	277, 559
XapI	RAATTY	3 cut(s)	599, 829, 851
XceI	RCATGY	4 cut(s)	224, 478, 644, 959
XmnI	GAANNNNTTC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.