Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007222

Physical Location & Seq

Genomic Coordinates Forward (+)

22877414 .. 22878205

Gene Structure 792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012836

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAGATTATGGGGCAGATTTGTATTCTTATCCTACTAGTTCTAGGCATTTGCAGCATAGATGCTGCAGATCCTATGGCAGATTTCTGCAACAAAGACACTAATATAAGTAAAAGTAGTCAAATCTCAGCAAATATTGATGCTCTCCTGGCTGAGTTGGTTTCCAAAACTGACTCAACTGGCTATTTTGCTAGTTCCTATGGCAAAGGCCAAGCTCAAGTCTATGGCTTGGCTCAATGCAGAGGTGATGTTGTGGGAAGCAAAGACTGCTCAAGTTGTATTCAAGGCGCTGCAAAAGAAATCCGCCAGCGTTGTCCAGACCAAGCAGCTGCAACGATTTGGTATGACTTTTGCTTCTTGAGGTACAGCAACAAGAGTTTCATTGGAGAAGTTGATACGTCTTATGGTATAATCTTCTATAATGTTCAGAATGTGACTGACCCTGAGAAGTTTGTCAAAGAACTAGGAGCTCTGGTGGATAATATTAAAGCACAAGCTGTGGTGCCAAAGAATCTAGGATTTGGGAAAGGTGAGACCAAGCTGTCACCATTGACGACACTCTATGCCTTTGGGCAATGCACAAGGGACTTAGCTAAGCTAGATTGTTCTCAGTGCTTGGCCATTGCAGTGGGAAACTACGAAACCATTTGTGGCAATCGAAGGGGATGTCGAGTTCTGTATGGTAGTTGCTATGTCAGATATGAGCTCTATCCAATTTTCTACCCTGTTGGTTCCAACAGTAGTACGAATGTTGTGGCTGATGAAACTATAATGATTCTAGTCAATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

264

Amino Acids

28.6

Weight (kDa)

5.6

Isoelectric Point (pI)

25.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	30 - 125	1e-23	Salt stress response/antifungal
Stress-antifung	PF01657	143 - 236	1.6e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48540
fragaria_vesca	FvH4_2g17970
malus_domestica	MD05G1163600.v1.1 MD10G1153400.v1.1
prunus_persica	Prupe.8G192200_v2.0.a1
pyrus_communis	pycom10g13230
rosa_chinensis	RchiOBHm_Chr6g0283211 RchiOBHm_Chr6g0283271
rosa_laevigata	RLG00000012835 RLG00000012836
rosa_multiflora	Rmu_sc0006459.1_g000002 Rmu_sc0006459.1_g000014 Rmu_sc0013038.1_g000018
rosa_roxburghii	Rroxscaffold_7G00185620 Rroxscaffold_7G00185640
rosa_rugosa	Rorug06G0152600
rosa_samantha	Rh6AG265100 Rh6AG265200 Rh6BG268000 Rh6BG268200 Rh6CG267200 Rh6CG267400 Rh6DG260400 Rh6DG260900
rosa_wichuraiana	Rw6G022980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	541
AccB1I	GGYRCC	1 cut(s)	502
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	618
AfaI	GTAC	2 cut(s)	365, 745
AgsI	TTSAA	1 cut(s)	284
AhlI	ACTAGT	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	147
AloI	GAACNNNNNNTCC	2 cut(s)	657, 689
AluBI	AGCT	8 cut(s)	215, 329, 470, 497, 541, 593, 598, 706
AluI	AGCT	8 cut(s)	215, 329, 470, 497, 541, 593, 598, 706
Alw21I	GWGCWC	2 cut(s)	472, 708
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	2 cut(s)	208, 618
ApeKI	GCWGC	5 cut(s)	54, 65, 290, 326, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	652, 684
AspLEI	GCGC	1 cut(s)	290
AsuHPI	GGTGA	3 cut(s)	257, 537, 542
BalI	TGGCCA	1 cut(s)	620
BanI	GGYRCC	1 cut(s)	502
BanII	GRGCYC	2 cut(s)	472, 708
Bbv12I	GWGCWC	2 cut(s)	472, 708
BbvI	GCAGC	5 cut(s)	52, 66, 277, 316, 338
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	527
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	7 cut(s)	38, 44, 192, 464, 515, 599, 779
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	291
BisI	GCNGC	5 cut(s)	55, 66, 291, 327, 330
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	5 cut(s)	56, 67, 292, 328, 331
Bme1390I	CCNGG	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	504, 733
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	2 cut(s)	52, 130
Bpu1102I	GCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	3 cut(s)	201, 256, 379
BsaI	GGTCTC	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	2 cut(s)	581, 621
BseBI	CCWGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	671
BseMI	GCAATG	2 cut(s)	581, 621
BseMII	CTCAG	4 cut(s)	141, 144, 435, 623
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	5 cut(s)	52, 66, 277, 316, 338
BshFI	GGCC	2 cut(s)	210, 620
BshNI	GGYRCC	1 cut(s)	502
BsiHKAI	GWGCWC	2 cut(s)	472, 708
BslFI	GGGAC	1 cut(s)	599
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	2 cut(s)	210, 620
Bso31I	GGTCTC	1 cut(s)	527
Bsp1286I	GDGCHC	2 cut(s)	472, 708
Bsp143I	GATC	1 cut(s)	70
Bsp1720I	GCTNAGC	1 cut(s)	594
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	2 cut(s)	210, 620
BspCNI	CTCAG	4 cut(s)	140, 145, 436, 622
BspLI	GGNNCC	2 cut(s)	504, 733
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	502
BspTNI	GGTCTC	1 cut(s)	527
BsrDI	GCAATG	2 cut(s)	581, 621
BsrI	ACTGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	70
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	740
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	6 cut(s)	127, 153, 444, 589, 594, 609
BstF5I	GGATG	1 cut(s)	671
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 149, 267
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	5 cut(s)	52, 66, 277, 316, 338
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	210, 620
BtsCI	GGATG	1 cut(s)	671
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	2 cut(s)	617, 633
Cac8I	GCNNGC	1 cut(s)	308
CfoI	GCGC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	364, 744
CviQI	GTAC	2 cut(s)	364, 744
DdeI	CTNAG	6 cut(s)	127, 153, 444, 589, 594, 609
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DrdI	GACNNNNNNGTC	1 cut(s)	541
DseDI	GACNNNNNNGTC	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	618
EciI	GGCGGA	1 cut(s)	293
Ecl136II	GAGCTC	2 cut(s)	470, 706
Eco24I	GRGCYC	2 cut(s)	472, 708
Eco31I	GGTCTC	1 cut(s)	527
Eco53kI	GAGCTC	2 cut(s)	470, 706
EcoICRI	GAGCTC	2 cut(s)	470, 706
EcoRII	CCWGG	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	472, 708
FaqI	GGGAC	1 cut(s)	599
Fnu4HI	GCNGC	5 cut(s)	55, 66, 291, 327, 330
FokI	GGATG	1 cut(s)	678
FriOI	GRGCYC	2 cut(s)	472, 708
Fsp4HI	GCNGC	5 cut(s)	55, 66, 291, 327, 330
FspBI	CTAG	7 cut(s)	38, 44, 192, 464, 515, 599, 779
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	5 cut(s)	55, 66, 291, 327, 330
HaeII	RGCGCY	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	210, 620
HhaI	GCGC	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HinfI	GANTC	3 cut(s)	173, 511, 775
HphI	GGTGA	3 cut(s)	257, 537, 542
Hpy188I	TCNGA	2 cut(s)	429, 698
Hpy188III	TCNNGA	2 cut(s)	317, 358
HpyAV	CCTTC	1 cut(s)	654
HpyCH4III	ACNGT	1 cut(s)	740
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	8 cut(s)	54, 68, 90, 240, 293, 332, 579, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 149, 267
HpyF3I	CTNAG	6 cut(s)	127, 153, 444, 589, 594, 609
HpySE526I	ACGT	1 cut(s)	398
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	467
LpnPI	CCDG	8 cut(s)	134, 161, 165, 320, 330, 456, 458, 738
Lsp1109I	GCAGC	5 cut(s)	52, 66, 277, 316, 338
LweI	GCATC	2 cut(s)	52, 130
MaeI	CTAG	7 cut(s)	38, 44, 192, 464, 515, 599, 779
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	2 cut(s)	433, 543
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	16, 406
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	2 cut(s)	472, 708
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	1 cut(s)	714
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	759
MnlI	CCTC	2 cut(s)	236, 354
Mox20I	TGGCCA	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	1 cut(s)	626
Msp20I	TGGCCA	1 cut(s)	620
MspA1I	CMGCKG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	54, 149, 267
NdeII	GATC	1 cut(s)	70
NlaIV	GGNNCC	2 cut(s)	504, 733
NmuCI	GTSAC	2 cut(s)	433, 543
PfeI	GAWTC	2 cut(s)	511, 775
PkrI	GCNGC	5 cut(s)	56, 67, 292, 328, 331
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Psp124BI	GAGCTC	2 cut(s)	472, 708
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	504, 733
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	365, 745
RsaNI	GTAC	2 cut(s)	364, 744
RseI	CAYNNNNRTG	1 cut(s)	626
SacI	GAGCTC	2 cut(s)	472, 708
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	5 cut(s)	55, 66, 291, 327, 330
Sau3AI	GATC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	2 cut(s)	472, 708
SfaNI	GCATC	2 cut(s)	52, 130
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	626
SmlI	CTYRAG	3 cut(s)	216, 271, 358
SmoI	CTYRAG	3 cut(s)	216, 271, 358
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	1 cut(s)	714
SsiI	CCGC	1 cut(s)	304
SspI	AATATT	2 cut(s)	136, 484
SspMI	CTAG	7 cut(s)	38, 44, 192, 464, 515, 599, 779
SstI	GAGCTC	2 cut(s)	472, 708
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	740
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	2 cut(s)	658, 670
TasI	AATT	1 cut(s)	714
TfiI	GAWTC	2 cut(s)	511, 775
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	2 cut(s)	617, 633
TseFI	GTSAC	2 cut(s)	433, 543
TseI	GCWGC	5 cut(s)	54, 65, 290, 326, 329
Tsp45I	GTSAC	2 cut(s)	433, 543
TspDTI	ATGAA	3 cut(s)	17, 370, 777
TspRI	CASTG	2 cut(s)	617, 633
XspI	CTAG	7 cut(s)	38, 44, 192, 464, 515, 599, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.