Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007222

Physical Location & Seq

Genomic Coordinates Reverse (-)

15401583 .. 15402299

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCAGATTTCTGCAACAATGACTCTAAAATAAGTAAGAGTAGTACAATCTCAGCAAATATTGATGCTTTACTGGCTCAGTTGGTTTCCAAAACTCCCTCAACTGGCTTTTCTGCTACCTCCTATGGCAAAGGCCAAGCTCAAGTCTATGGCTTGGCTCAATGTAGAGGTGATGTTGTGGGAAGCAAAGACTGCTCCAGTTGTATTCAAGACGCTGCGAAAGAAATCCGGCAGCGTTGTCCAGACCAAGCAGCTGCAACGATTTGGTACGACTTTTGCTTCTTGAAGTATAGCAACAAGAGTTTCACTGGAGAAGTAGATACGTCTTATGGCATAATCTTCTATAATGTTCAGAATGTGACTGACCCTGAGAAGTTTGTCAAAAAACTAGGAGCTCTGGTCGATGATATTAAAGCACAAGCTGTGGTGCCAAAGAATTTAGGATTTGGGAAAGGTGAGACCAAGCTGTCACCATTGTCGACACTCTATGCGTTTGGGCAATGTACAAGGGACTTAGCTAAACAAGATTGTACTCAGTGCTTGGCCATTGCAGTGGGGAACTACGAAACCATTTGTGGCAATCGAAGGGGATGCCGAGTTCTGTATGGTAGTTGCTATGTCAGATATGAGCTCTATCCAATTTTCTACCCTGTTGGTGCCAATAGTACTATGAATGTTGTGGCTGATGAAACTATAATGACTCTACTTAATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

239

Amino Acids

25.91

Weight (kDa)

7.9

Isoelectric Point (pI)

23.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	5 - 100	8.2e-24	Salt stress response/antifungal
Stress-antifung	PF01657	118 - 211	4.5e-13	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48540
fragaria_vesca	FvH4_2g17970
malus_domestica	MD05G1163600.v1.1 MD10G1153400.v1.1
prunus_persica	Prupe.8G192200_v2.0.a1
pyrus_communis	pycom10g13230
rosa_chinensis	RchiOBHm_Chr6g0283211 RchiOBHm_Chr6g0283271
rosa_laevigata	RLG00000012835 RLG00000012836
rosa_multiflora	Rmu_sc0006459.1_g000002 Rmu_sc0006459.1_g000014 Rmu_sc0013038.1_g000018
rosa_roxburghii	Rroxscaffold_7G00185620 Rroxscaffold_7G00185640
rosa_rugosa	Rorug06G0152600
rosa_samantha	Rh6AG265100 Rh6AG265200 Rh6BG268000 Rh6BG268200 Rh6CG267200 Rh6CG267400 Rh6DG260400 Rh6DG260900
rosa_wichuraiana	Rw6G022980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	466
AccB1I	GGYRCC	2 cut(s)	427, 656
AccI	GTMKAC	1 cut(s)	479
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	1 cut(s)	436
AfaI	GTAC	5 cut(s)	46, 269, 505, 532, 667
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	209, 286
AloI	GAACNNNNNNTCC	2 cut(s)	582, 614
AluBI	AGCT	7 cut(s)	140, 254, 395, 422, 466, 518, 631
AluI	AGCT	7 cut(s)	140, 254, 395, 422, 466, 518, 631
Alw21I	GWGCWC	2 cut(s)	397, 633
Alw26I	GTCTC	1 cut(s)	452
AoxI	GGCC	2 cut(s)	133, 543
ApeKI	GCWGC	4 cut(s)	215, 232, 251, 254
ApoI	RAATTY	1 cut(s)	436
AsuHPI	GGTGA	3 cut(s)	182, 462, 467
BalI	TGGCCA	1 cut(s)	545
BanI	GGYRCC	2 cut(s)	427, 656
BanII	GRGCYC	2 cut(s)	397, 633
Bbv12I	GWGCWC	2 cut(s)	397, 633
BbvI	GCAGC	4 cut(s)	202, 241, 244, 263
BcgI	CGANNNNNNTGC	2 cut(s)	573, 607
BcoDI	GTCTC	1 cut(s)	452
BfaI	CTAG	1 cut(s)	389
BisI	GCNGC	4 cut(s)	216, 233, 252, 255
BlsI	GCNGC	4 cut(s)	217, 234, 253, 256
BmcAI	AGTACT	1 cut(s)	667
BmiI	GGNNCC	2 cut(s)	429, 658
BmsI	GCATC	2 cut(s)	55, 581
BpmI	CTGGAG	2 cut(s)	181, 330
BpuEI	CTTGAG	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	452
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	4 cut(s)	78, 109, 198, 313
Bse3DI	GCAATG	2 cut(s)	506, 546
BseGI	GGATG	1 cut(s)	596
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	2 cut(s)	506, 546
BseMII	CTCAG	4 cut(s)	66, 92, 360, 548
BseNI	ACTGG	4 cut(s)	78, 109, 198, 313
BseXI	GCAGC	4 cut(s)	202, 241, 244, 263
BshFI	GGCC	2 cut(s)	135, 545
BshNI	GGYRCC	2 cut(s)	427, 656
BsiHKAI	GWGCWC	2 cut(s)	397, 633
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	2 cut(s)	135, 545
Bso31I	GGTCTC	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	397, 633
Bsp1407I	TGTACA	1 cut(s)	503
BspANI	GGCC	2 cut(s)	135, 545
BspCNI	CTCAG	4 cut(s)	65, 91, 361, 547
BspLI	GGNNCC	2 cut(s)	429, 658
BspT107I	GGYRCC	2 cut(s)	427, 656
BspTNI	GGTCTC	1 cut(s)	452
BsrDI	GCAATG	2 cut(s)	506, 546
BsrGI	TGTACA	1 cut(s)	503
BsrI	ACTGG	4 cut(s)	78, 109, 198, 313
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstAUI	TGTACA	1 cut(s)	503
BstDEI	CTNAG	5 cut(s)	52, 78, 369, 514, 534
BstF5I	GGATG	1 cut(s)	596
BstMAI	GTCTC	1 cut(s)	452
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 192
BstV1I	GCAGC	4 cut(s)	202, 241, 244, 263
BstXI	CCANNNNNNTGG	1 cut(s)	553
BsuRI	GGCC	2 cut(s)	135, 545
BtsCI	GGATG	1 cut(s)	596
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	3 cut(s)	306, 542, 558
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	5 cut(s)	45, 268, 504, 531, 666
CviQI	GTAC	5 cut(s)	45, 268, 504, 531, 666
DdeI	CTNAG	5 cut(s)	52, 78, 369, 514, 534
DrdI	GACNNNNNNGTC	1 cut(s)	466
DseDI	GACNNNNNNGTC	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	543
Ecl136II	GAGCTC	2 cut(s)	395, 631
Eco24I	GRGCYC	2 cut(s)	397, 633
Eco31I	GGTCTC	1 cut(s)	452
Eco53kI	GAGCTC	2 cut(s)	395, 631
EcoICRI	GAGCTC	2 cut(s)	395, 631
EcoT38I	GRGCYC	2 cut(s)	397, 633
FaqI	GGGAC	1 cut(s)	524
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	4 cut(s)	216, 233, 252, 255
FokI	GGATG	1 cut(s)	603
FriOI	GRGCYC	2 cut(s)	397, 633
Fsp4HI	GCNGC	4 cut(s)	216, 233, 252, 255
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	4 cut(s)	216, 233, 252, 255
GsuI	CTGGAG	2 cut(s)	181, 330
HaeIII	GGCC	2 cut(s)	135, 545
HapII	CCGG	1 cut(s)	229
HgaI	GACGC	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	2 cut(s)	23, 700
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	3 cut(s)	182, 462, 467
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	2 cut(s)	354, 623
Hpy188III	TCNNGA	3 cut(s)	209, 242, 283
Hpy8I	GTNNAC	1 cut(s)	480
HpyAV	CCTTC	1 cut(s)	579
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	3 cut(s)	15, 257, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 192
HpyF3I	CTNAG	5 cut(s)	52, 78, 369, 514, 534
HpySE526I	ACGT	1 cut(s)	323
LmnI	GCTCC	2 cut(s)	200, 392
LpnPI	CCDG	9 cut(s)	59, 90, 211, 242, 255, 294, 381, 383, 663
Lsp1109I	GCAGC	4 cut(s)	202, 241, 244, 263
LweI	GCATC	2 cut(s)	55, 581
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	358, 468
MboII	GAAGA	1 cut(s)	331
MhlI	GDGCHC	2 cut(s)	397, 633
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	2 cut(s)	436, 639
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	2 cut(s)	17, 694
MnlI	CCTC	3 cut(s)	109, 130, 161
Mox20I	TGGCCA	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	2 cut(s)	411, 708
MslI	CAYNNNNRTG	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	545
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	2 cut(s)	74, 192
NlaIV	GGNNCC	2 cut(s)	429, 658
NmeAIII	GCCGAG	1 cut(s)	620
NmuCI	GTSAC	2 cut(s)	358, 468
PkrI	GCNGC	4 cut(s)	217, 234, 253, 256
PleI	GAGTC	2 cut(s)	17, 694
PpsI	GAGTC	2 cut(s)	17, 694
Psp124BI	GAGCTC	2 cut(s)	397, 633
PspN4I	GGNNCC	2 cut(s)	429, 658
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	5 cut(s)	46, 269, 505, 532, 667
RsaNI	GTAC	5 cut(s)	45, 268, 504, 531, 666
RseI	CAYNNNNRTG	1 cut(s)	551
SacI	GAGCTC	2 cut(s)	397, 633
SalI	GTCGAC	1 cut(s)	478
SaqAI	TTAA	2 cut(s)	411, 708
SatI	GCNGC	4 cut(s)	216, 233, 252, 255
ScaI	AGTACT	1 cut(s)	667
SchI	GAGTC	2 cut(s)	17, 694
SduI	GDGCHC	2 cut(s)	397, 633
SfaNI	GCATC	2 cut(s)	55, 581
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	436, 639
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	1 cut(s)	389
SstI	GAGCTC	2 cut(s)	397, 633
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	3 cut(s)	402, 479, 583
TasI	AATT	2 cut(s)	436, 639
TatI	WGTACW	4 cut(s)	44, 503, 530, 665
Tru1I	TTAA	2 cut(s)	411, 708
Tru9I	TTAA	2 cut(s)	411, 708
TscAI	CASTG	3 cut(s)	313, 542, 558
TseFI	GTSAC	2 cut(s)	358, 468
TseI	GCWGC	4 cut(s)	215, 232, 251, 254
Tsp45I	GTSAC	2 cut(s)	358, 468
TspDTI	ATGAA	2 cut(s)	686, 702
TspRI	CASTG	3 cut(s)	313, 542, 558
XapI	RAATTY	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	479
XspI	CTAG	1 cut(s)	389
ZrmI	AGTACT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.