Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007222

Physical Location & Seq

Genomic Coordinates Reverse (-)

29269289 .. 29270191

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1163600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTTCCCCACTTCCACTTCCATCTCCACTTCACTGCTTGTCATATAAACAACCACCTCACAAAATCTATCTTCAGCTATGCTTTGAAGTGAGTCAAAATATGAAGATTATGAACTTTTCATACCACATTCTTCTCTATTTGCTAGTTTTAAGCAATTGCAGTGCAGAATCTCAAGATCCTTTGGGAGATTTCTGCAACAAAGATAGCACTAAAATAAGTAATGGCACTCAAATATCACAAAATATTGATAGCTTGTTGGCTGAATTGGTTCCGAAAACTGCCTCAACCGGCTTTTTGGCTACCACCTATGGGGAAAAGCAAGACCAAGTTTATGGCCTGGCTCAGTGCAGAGGTGACGTTGTGGGCACCAAAGACTGCTCAAGTTGCATCCAAGACGCTGCGAAGCAAATCCGCCAGCGCTGTCCGAACCAAGCAGACGCGCGAATTTGGTATGACTATTGCTTCTTGAGGTACAGTGACAAGAGCTTCATTGGGGAAGTTGACACATCATATGGTATATTTTACTATAATGTTTACAATGTGACCGACCCCGAGAAGTTTAATGAGGAATTAGGAGCTCTGACAGATAAGATTAGGAAACAAGCTGTTGTGCCGGAGAGTGGAGGGCTCGGGAAAGGTGAGACAAAGCTATCACCATTTGTGACACTCTATGCTTTGGTGCAGTGCACAAGGGACTTGTCTAAGCTAGGCTGCTCTCAGTGCCTAGCTATTGCAGTGGGAAATTTCCCAACTTTTTGTAACAACAGAAAGGGATGTAGAGTTTTGTATAGTAGCTGCTACGTTAGATATGAGCTCTATCCATTTTTCTACCCTCTTGATTCAAACAATACCCTGCATGCCGTGGATGATAATAATGTAATGGCTATAGCTTATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009628 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Stress-antifung

Protein Analysis

301

Amino Acids

33.6

Weight (kDa)

6.1

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	66 - 161	4e-25	Salt stress response/antifungal
Stress-antifung	PF01657	181 - 273	6.5e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48540
fragaria_vesca	FvH4_2g17970
malus_domestica	MD05G1163600.v1.1 MD10G1153400.v1.1
prunus_persica	Prupe.8G192200_v2.0.a1
pyrus_communis	pycom10g13230
rosa_chinensis	RchiOBHm_Chr6g0283211 RchiOBHm_Chr6g0283271
rosa_laevigata	RLG00000012835 RLG00000012836
rosa_multiflora	Rmu_sc0006459.1_g000002 Rmu_sc0006459.1_g000014 Rmu_sc0013038.1_g000018
rosa_roxburghii	Rroxscaffold_7G00185620 Rroxscaffold_7G00185640
rosa_rugosa	Rorug06G0152600
rosa_samantha	Rh6AG265100 Rh6AG265200 Rh6BG268000 Rh6BG268200 Rh6CG267200 Rh6CG267400 Rh6DG260400 Rh6DG260900
rosa_wichuraiana	Rw6G022980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AccII	CGCG	2 cut(s)	443, 445
AciI	CCGC	1 cut(s)	415
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	447, 745
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	476
AfeI	AGCGCT	1 cut(s)	422
AfiI	CCNNNNNNNGG	2 cut(s)	312, 623
AgsI	TTSAA	2 cut(s)	89, 846
AjnI	CCWGG	1 cut(s)	339
Alw21I	GWGCWC	3 cut(s)	583, 692, 819
Alw26I	GTCTC	1 cut(s)	638
Alw44I	GTGCAC	1 cut(s)	688
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	2 cut(s)	554, 632
Aor51HI	AGCGCT	1 cut(s)	422
AoxI	GGCC	1 cut(s)	337
ApaLI	GTGCAC	1 cut(s)	688
ApeKI	GCWGC	3 cut(s)	401, 714, 798
ApoI	RAATTY	2 cut(s)	447, 745
Asp700I	GAANNNNTTC	1 cut(s)	270
AspLEI	GCGC	2 cut(s)	423, 445
AsuHPI	GGTGA	3 cut(s)	368, 648, 653
AvaI	CYCGRG	2 cut(s)	554, 632
BaeGI	GKGCMC	2 cut(s)	371, 692
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	3 cut(s)	583, 633, 819
Bbv12I	GWGCWC	3 cut(s)	583, 692, 819
BbvI	GCAGC	3 cut(s)	388, 701, 785
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	848
BciT130I	CCWGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	638
BfaI	CTAG	3 cut(s)	146, 710, 728
BfmI	CTRYAG	1 cut(s)	888
BfoI	RGCGCY	1 cut(s)	424
BisI	GCNGC	3 cut(s)	402, 715, 799
BlsI	GCNGC	3 cut(s)	403, 716, 800
Bme1390I	CCNGG	1 cut(s)	341
BmeT110I	CYCGRG	2 cut(s)	554, 632
BmiI	GGNNCC	2 cut(s)	273, 370
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	1 cut(s)	399
BpuEI	CTTGAG	3 cut(s)	159, 367, 490
BsaJI	CCNNGG	1 cut(s)	864
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 623
Bse118I	RCCGGY	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	864
BseGI	GGATG	3 cut(s)	390, 782, 874
BseLI	CCNNNNNNNGG	2 cut(s)	312, 623
BseMII	CTCAG	2 cut(s)	359, 734
BseSI	GKGCMC	2 cut(s)	371, 692
BseXI	GCAGC	3 cut(s)	388, 701, 785
BsgI	GTGCAG	3 cut(s)	186, 370, 704
Bsh1236I	CGCG	2 cut(s)	443, 445
BshFI	GGCC	1 cut(s)	339
BshNI	GGYRCC	1 cut(s)	368
BsiHKAI	GWGCWC	3 cut(s)	583, 692, 819
BsiHKCI	CYCGRG	2 cut(s)	554, 632
BsiSI	CCGG	2 cut(s)	291, 617
BslFI	GGGAC	1 cut(s)	710
BslI	CCNNNNNNNGG	2 cut(s)	312, 623
BsmAI	GTCTC	1 cut(s)	638
BsmFI	GGGAC	1 cut(s)	710
BsnI	GGCC	1 cut(s)	339
BsoBI	CYCGRG	2 cut(s)	554, 632
Bsp1286I	GDGCHC	5 cut(s)	371, 583, 633, 692, 819
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	415
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	2 cut(s)	358, 733
BspFNI	CGCG	2 cut(s)	443, 445
BspLI	GGNNCC	2 cut(s)	273, 370
BspPI	GGATC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	368
BsrFI	RCCGGY	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	864
BssMI	GATC	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	419, 861
BstDEI	CTNAG	3 cut(s)	345, 705, 720
BstDSI	CCRYGG	1 cut(s)	864
BstF5I	GGATG	3 cut(s)	390, 782, 874
BstFNI	CGCG	2 cut(s)	443, 445
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	2 cut(s)	423, 445
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	1 cut(s)	638
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	387, 723
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	1 cut(s)	888
BstSLI	GKGCMC	2 cut(s)	371, 692
BstUI	CGCG	2 cut(s)	443, 445
BstV1I	GCAGC	3 cut(s)	388, 701, 785
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	864
BtsCI	GGATG	3 cut(s)	390, 782, 874
BtsI	GCAGTG	4 cut(s)	34, 169, 692, 744
BtsIMutI	CAGTG	7 cut(s)	34, 169, 353, 484, 692, 728, 744
Cac8I	GCNNGC	2 cut(s)	419, 861
CfoI	GCGC	2 cut(s)	423, 445
Cfr10I	RCCGGY	1 cut(s)	290
CseI	GACGC	2 cut(s)	407, 449
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	1 cut(s)	860
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	3 cut(s)	345, 705, 720
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
EciI	GGCGGA	1 cut(s)	404
Ecl136II	GAGCTC	2 cut(s)	581, 817
Eco24I	GRGCYC	3 cut(s)	583, 633, 819
Eco47III	AGCGCT	1 cut(s)	422
Eco53kI	GAGCTC	2 cut(s)	581, 817
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	2 cut(s)	554, 632
EcoICRI	GAGCTC	2 cut(s)	581, 817
EcoRII	CCWGG	1 cut(s)	339
EcoT38I	GRGCYC	3 cut(s)	583, 633, 819
FaeI	CATG	1 cut(s)	863
FaqI	GGGAC	1 cut(s)	710
FatI	CATG	1 cut(s)	859
FauNDI	CATATG	1 cut(s)	514
Fnu4HI	GCNGC	3 cut(s)	402, 715, 799
FokI	GGATG	3 cut(s)	377, 789, 881
FriOI	GRGCYC	3 cut(s)	583, 633, 819
Fsp4HI	GCNGC	3 cut(s)	402, 715, 799
FspBI	CTAG	3 cut(s)	146, 710, 728
GlaI	GCGC	2 cut(s)	422, 444
GluI	GCNGC	3 cut(s)	402, 715, 799
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	1 cut(s)	339
HapII	CCGG	2 cut(s)	291, 617
HgaI	GACGC	2 cut(s)	407, 449
HhaI	GCGC	2 cut(s)	423, 445
Hin1II	CATG	1 cut(s)	863
Hin6I	GCGC	2 cut(s)	421, 443
HinP1I	GCGC	2 cut(s)	421, 443
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	3 cut(s)	94, 170, 842
HpaII	CCGG	2 cut(s)	291, 617
HphI	GGTGA	3 cut(s)	368, 648, 653
Hpy166II	GTNNAC	3 cut(s)	505, 538, 690
Hpy188I	TCNGA	3 cut(s)	276, 429, 585
Hpy188III	TCNNGA	4 cut(s)	176, 469, 634, 839
Hpy8I	GTNNAC	3 cut(s)	505, 538, 690
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	2 cut(s)	360, 804
HpyCH4V	TGCA	9 cut(s)	162, 167, 198, 351, 390, 685, 690, 737, 859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	387, 723
HpyF3I	CTNAG	3 cut(s)	345, 705, 720
HpySE526I	ACGT	2 cut(s)	360, 804
Hsp92II	CATG	1 cut(s)	863
HspAI	GCGC	2 cut(s)	421, 443
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	578
LpnPI	CCDG	6 cut(s)	304, 326, 353, 431, 630, 869
Lsp1109I	GCAGC	3 cut(s)	388, 701, 785
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	3 cut(s)	146, 710, 728
MaeII	ACGT	2 cut(s)	360, 804
MaeIII	GTNAC	5 cut(s)	356, 479, 544, 664, 761
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	3 cut(s)	65, 118, 125
MfeI	CAATTG	1 cut(s)	157
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	5 cut(s)	371, 583, 633, 692, 819
MluCI	AATT	5 cut(s)	157, 266, 447, 572, 745
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	7 cut(s)	69, 295, 347, 465, 562, 620, 846
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	2 cut(s)	152, 564
MspI	CCGG	2 cut(s)	291, 617
MspR9I	CCNGG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	2 cut(s)	443, 445
MwoI	GCNNNNNNNGC	2 cut(s)	387, 723
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	863
NlaIV	GGNNCC	2 cut(s)	273, 370
NmuCI	GTSAC	4 cut(s)	356, 479, 544, 664
NspI	RCATGY	1 cut(s)	863
PaeI	GCATGC	1 cut(s)	863
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	170, 842
PkrI	GCNGC	3 cut(s)	403, 716, 800
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
Psp124BI	GAGCTC	2 cut(s)	583, 819
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	273, 370
PsrI	GAACNNNNNNTAC	2 cut(s)	107, 139
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SacI	GAGCTC	2 cut(s)	583, 819
SaqAI	TTAA	2 cut(s)	152, 564
SatI	GCNGC	3 cut(s)	402, 715, 799
Sau3AI	GATC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	5 cut(s)	371, 583, 633, 692, 819
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	888
SmlI	CTYRAG	3 cut(s)	174, 382, 469
SmoI	CTYRAG	3 cut(s)	174, 382, 469
SphI	GCATGC	1 cut(s)	863
Sse9I	AATT	5 cut(s)	157, 266, 447, 572, 745
SsiI	CCGC	1 cut(s)	415
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	3 cut(s)	146, 710, 728
SstI	GAGCTC	2 cut(s)	583, 819
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	2 cut(s)	363, 807
TaqII	GACCGA	1 cut(s)	563
TasI	AATT	5 cut(s)	157, 266, 447, 572, 745
TfiI	GAWTC	2 cut(s)	170, 842
Tru1I	TTAA	2 cut(s)	152, 564
Tru9I	TTAA	2 cut(s)	152, 564
TscAI	CASTG	7 cut(s)	41, 169, 353, 484, 692, 728, 744
TseFI	GTSAC	4 cut(s)	356, 479, 544, 664
TseI	GCWGC	3 cut(s)	401, 714, 798
Tsp45I	GTSAC	4 cut(s)	356, 479, 544, 664
TspDTI	ATGAA	4 cut(s)	111, 119, 128, 481
TspRI	CASTG	7 cut(s)	41, 169, 353, 484, 692, 728, 744
VneI	GTGCAC	1 cut(s)	688
XapI	RAATTY	2 cut(s)	447, 745
XceI	RCATGY	1 cut(s)	863
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	3 cut(s)	146, 710, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.