Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012925

Physical Location & Seq

Genomic Coordinates Forward (+)

19675452 .. 19678194

Gene Structure 2743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48545.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGAAGCTAGAAGACTCGCGATCCTCTGTTCTCACCTGAACCCACCTGGTCCGAACCCGACCCGAGACCCGACTCTCAGGGTCTCCGATTGTAGCTCTGGTTCTTCCGGCGACGGGAAAGTGGAATCATCTACTCTCCAAAACGACTGCGTTTTCTGCAAGATTATCCGTGGCGAGTCTCCATGTCTCAAGTTGTACGAGGATGATATGTGTTTGTGTATTCTGGATACTAATCCACTAAGTCATGGGCACTCTCTTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAGTTGTTGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCCATCGTGAAAGCTACCGGGAGTGACTCATTTAACTTATTGGTTAACAACGGCGCAGCAGCTGGACAAGTCATATTTCACACACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAGAGCTTACGGAGACACTCTCTGAAACTTGACAAGGAAGCATCTCAACTGGTATCGTGTGTTCGACGACACTTGTGCAGCCTTCCTGAAGAACAACTGGTTCAACCCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

197

Amino Acids

21.56

Weight (kDa)

6.74

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	50 - 102	2.2e-08	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	57 - 144	4e-17	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48545 AT5G48545 AT5G48545
fragaria_vesca	FvH4_2g18050
malus_domestica	MD05G1165000.v1.1 MD10G1154300.v1.1
prunus_persica	Prupe.8G193200_v2.0.a1
pyrus_communis	pycom05g15360 pycom10g13340
rosa_chinensis	RchiOBHm_Chr6g0283441
rosa_laevigata	RLG00000012826
rosa_multiflora	Rmu_sc0004959.1_g000018
rosa_rugosa	Rorug06G0154200
rosa_samantha	Rh6AG266500 Rh6BG269000 Rh6CG268900 Rh6DG262300
rosa_wichuraiana	Rw6G023070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	20, 451
AciI	CCGC	1 cut(s)	449
AclWI	GGATC	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	588
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	114, 454
AgsI	TTSAA	1 cut(s)	584
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	5 cut(s)	8, 96, 362, 410, 486
AluI	AGCT	5 cut(s)	8, 96, 362, 410, 486
Alw26I	GTCTC	5 cut(s)	60, 88, 183, 191, 487
AlwI	GGATC	1 cut(s)	16
AlwNI	CAGNNNCTG	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	63
ApeKI	GCWGC	4 cut(s)	314, 404, 407, 558
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	19
BbvI	GCAGC	4 cut(s)	301, 416, 419, 570
BccI	CCATC	1 cut(s)	359
BceAI	ACGGC	1 cut(s)	415
BcgI	CGANNNNNNTGC	2 cut(s)	537, 571
BciT130I	CCWGG	1 cut(s)	48
BciVI	GTATCC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	5 cut(s)	60, 88, 183, 191, 487
BfaI	CTAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	220
BisI	GCNGC	4 cut(s)	315, 405, 408, 559
BlsI	GCNGC	4 cut(s)	316, 406, 409, 560
Bme1390I	CCNGG	2 cut(s)	48, 367
Bme18I	GGWCC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	50
BmrFI	CCNGG	2 cut(s)	48, 367
BmsI	GCATC	1 cut(s)	530
BpiI	GAAGAC	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	484, 516
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	231
BsaI	GGTCTC	2 cut(s)	60, 88
BsaJI	CCNNGG	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 454
Bse1I	ACTGG	2 cut(s)	534, 582
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	2 cut(s)	114, 454
BseMII	CTCAG	2 cut(s)	91, 318
BseNI	ACTGG	2 cut(s)	534, 582
BseRI	GAGGAG	1 cut(s)	288
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	4 cut(s)	301, 416, 419, 570
BsgI	GTGCAG	1 cut(s)	577
Bsh1236I	CGCG	2 cut(s)	20, 451
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	108, 366
BslI	CCNNNNNNNGG	2 cut(s)	114, 454
BsmAI	GTCTC	5 cut(s)	60, 88, 183, 191, 487
Bso31I	GGTCTC	2 cut(s)	60, 88
BsoBI	CYCGRG	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	21
Bsp68I	TCGCGA	1 cut(s)	20
BspACI	CCGC	1 cut(s)	449
BspCNI	CTCAG	2 cut(s)	90, 317
BspFNI	CGCG	2 cut(s)	20, 451
BspPI	GGATC	1 cut(s)	16
BspTNI	GGTCTC	2 cut(s)	60, 88
BsrI	ACTGG	2 cut(s)	534, 582
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	48
BstDEI	CTNAG	4 cut(s)	77, 239, 286, 304
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	2 cut(s)	20, 451
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	5 cut(s)	60, 88, 183, 191, 487
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	2 cut(s)	46, 365
BstSLI	GKGCMC	1 cut(s)	252
BstUI	CGCG	2 cut(s)	20, 451
BstV1I	GCAGC	4 cut(s)	301, 416, 419, 570
BstV2I	GAAGAC	1 cut(s)	19
BsuI	GTATCC	1 cut(s)	220
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	208
BtuMI	TCGCGA	1 cut(s)	20
CaiI	CAGNNNCTG	1 cut(s)	410
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	3 cut(s)	183, 245, 319
CviJI	RGCY	7 cut(s)	8, 96, 362, 410, 476, 486, 561
CviKI_1	RGCY	7 cut(s)	8, 96, 362, 410, 476, 486, 561
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	4 cut(s)	77, 239, 286, 304
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eco31I	GGTCTC	2 cut(s)	60, 88
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	588
Eco88I	CYCGRG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	46
FaeI	CATG	3 cut(s)	186, 248, 322
FaiI	YATR	7 cut(s)	184, 209, 246, 320, 422, 443, 472
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	3 cut(s)	182, 244, 318
FauI	CCCGC	1 cut(s)	456
Fnu4HI	GCNGC	4 cut(s)	315, 405, 408, 559
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	4 cut(s)	315, 405, 408, 559
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	4 cut(s)	315, 405, 408, 559
HapII	CCGG	2 cut(s)	108, 366
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	3 cut(s)	186, 248, 322
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	5 cut(s)	15, 73, 125, 176, 374
HpaI	GTTAAC	1 cut(s)	394
HpaII	CCGG	2 cut(s)	108, 366
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	4 cut(s)	54, 88, 481, 504
Hpy188III	TCNNGA	4 cut(s)	19, 224, 355, 566
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	2 cut(s)	116, 549
HpyAV	CCTTC	1 cut(s)	572
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	2 cut(s)	159, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	4 cut(s)	77, 239, 286, 304
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	3 cut(s)	186, 248, 322
HspAI	GCGC	1 cut(s)	402
KspAI	GTTAAC	1 cut(s)	394
Kzo9I	GATC	1 cut(s)	21
Lsp1109I	GCAGC	4 cut(s)	301, 416, 419, 570
LweI	GCATC	1 cut(s)	530
MabI	ACCWGGT	1 cut(s)	46
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	4 cut(s)	270, 344, 371, 461
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	3 cut(s)	24, 96, 581
MhlI	GDGCHC	1 cut(s)	252
MlyI	GAGTC	4 cut(s)	9, 67, 185, 368
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	6 cut(s)	35, 193, 283, 309, 313, 345
MseI	TTAA	2 cut(s)	381, 393
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	2 cut(s)	108, 366
MspR9I	CCNGG	2 cut(s)	48, 367
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	2 cut(s)	20, 451
MwoI	GCNNNNNNNGC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	367
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	3 cut(s)	186, 248, 322
NmuCI	GTSAC	2 cut(s)	371, 461
NruI	TCGCGA	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	4 cut(s)	316, 406, 409, 560
PleI	GAGTC	4 cut(s)	9, 67, 184, 368
PpsI	GAGTC	4 cut(s)	9, 67, 184, 368
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	50
PsrI	GAACNNNNNNTAC	4 cut(s)	85, 117, 525, 557
PstNI	CAGNNNCTG	1 cut(s)	410
PvuII	CAGCTG	1 cut(s)	410
RruI	TCGCGA	1 cut(s)	20
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	381, 393
SatI	GCNGC	4 cut(s)	315, 405, 408, 559
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	4 cut(s)	9, 67, 185, 368
ScrFI	CCNGG	2 cut(s)	48, 367
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	9 cut(s)	10, 39, 49, 98, 287, 364, 412, 463, 488
SexAI	ACCWGGT	1 cut(s)	46
SfaNI	GCATC	1 cut(s)	530
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SsiI	CCGC	1 cut(s)	449
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	46, 365
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	1 cut(s)	544
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	381, 393
Tru9I	TTAA	2 cut(s)	381, 393
TseFI	GTSAC	2 cut(s)	371, 461
TseI	GCWGC	4 cut(s)	314, 404, 407, 558
Tsp45I	GTSAC	2 cut(s)	371, 461
TspGWI	ACGGA	2 cut(s)	158, 505
VpaK11BI	GGWCC	1 cut(s)	50
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.