Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012925

Physical Location & Seq

Genomic Coordinates Forward (+)

24215620 .. 24217803

Gene Structure 2184 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1154300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGGCCCGAAGGCTCGCCATTATCTGCTCCCACATCCGACCCGGTTCGGTTCTTGGTCCGACCCAATTAGCTCTCGTTTCCAGGTCCAATTGCGATTCCGGTTTGAACAGTAAGCAGTGGCTCAGTGGTTCCGACGAGGGCAATAGCGAAAACGGCTGCGTTTTCTGTAAAATTATTCGCGGAGAGTCACCGGCTTTCAAGCTCTACGAAGATGATGTTTGCTTGTGCATATTGGATACGAGTCCGCTGAGTCGTGGGCACTCTCTGATTATCCCCAAATCTCATTTTTCTTCGTTGAAAGCCACACCCCCGGATGTGGTAGCTGCAATGTGTTCAAAAGTGCCCTTTATCAGCAGCGCAATCATGAAAGCCACTGATTCTGATTCGTTCAACTTGTTAGTTAACAACGGTAGAGCTGCAGGCCAAGTTATATTTCATACTCATATTCACATAATACCGCGCAAGGCCCTTGATTGCCTTTGGGCTTCTGAGAGTTTGCGGAGGCGGCCCCTGAACTCAGACCAGGAAGCATCTCGACTTGCAGATCATGTTCGAGAGCAATTGTCAATATCAGACAACTCCAAAATCAGCAAGGGTGAAGGATCTAGTCTTACCGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

209

Amino Acids

22.59

Weight (kDa)

7.62

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	54 - 154	3.8e-11	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	61 - 156	5.1e-23	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48545 AT5G48545 AT5G48545
fragaria_vesca	FvH4_2g18050
malus_domestica	MD05G1165000.v1.1 MD10G1154300.v1.1
prunus_persica	Prupe.8G193200_v2.0.a1
pyrus_communis	pycom05g15360 pycom10g13340
rosa_chinensis	RchiOBHm_Chr6g0283441
rosa_laevigata	RLG00000012826
rosa_multiflora	Rmu_sc0004959.1_g000018
rosa_rugosa	Rorug06G0154200
rosa_samantha	Rh6AG266500 Rh6BG269000 Rh6CG268900 Rh6DG262300
rosa_wichuraiana	Rw6G023070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	183, 463
AciI	CCGC	5 cut(s)	183, 248, 461, 502, 508
AclWI	GGATC	1 cut(s)	613
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	5 cut(s)	109, 202, 301, 339, 394
AjnI	CCWGG	2 cut(s)	83, 525
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	4 cut(s)	74, 205, 326, 419
AluI	AGCT	4 cut(s)	74, 205, 326, 419
AlwI	GGATC	1 cut(s)	613
AoxI	GGCC	4 cut(s)	6, 424, 468, 509
ApeKI	GCWGC	4 cut(s)	159, 326, 357, 419
AspLEI	GCGC	2 cut(s)	362, 465
AspS9I	GGNCC	5 cut(s)	7, 59, 87, 469, 510
AsuC2I	CCSGG	2 cut(s)	45, 314
AsuHPI	GGTGA	2 cut(s)	183, 611
AvaII	GGWCC	2 cut(s)	59, 87
BaeGI	GKGCMC	2 cut(s)	264, 348
BbvI	GCAGC	4 cut(s)	146, 313, 369, 406
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	2 cut(s)	85, 527
BciVI	GTATCC	1 cut(s)	232
BcnI	CCSGG	2 cut(s)	45, 314
BfaI	CTAG	2 cut(s)	609, 625
BfmI	CTRYAG	1 cut(s)	420
BfuI	GTATCC	1 cut(s)	232
BisI	GCNGC	5 cut(s)	160, 327, 358, 420, 509
BlsI	GCNGC	5 cut(s)	161, 328, 359, 421, 510
Bme1390I	CCNGG	4 cut(s)	45, 85, 314, 527
Bme18I	GGWCC	2 cut(s)	59, 87
BmgT120I	GGNCC	5 cut(s)	7, 59, 87, 469, 510
BmiI	GGNNCC	2 cut(s)	133, 512
BmrFI	CCNGG	4 cut(s)	45, 85, 314, 527
BmsI	GCATC	1 cut(s)	542
BpuMI	CCSGG	2 cut(s)	45, 314
BsaJI	CCNNGG	1 cut(s)	312
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse118I	RCCGGY	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	85, 527
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	2 cut(s)	36, 322
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	4 cut(s)	139, 242, 483, 534
BseSI	GKGCMC	2 cut(s)	264, 348
BseXI	GCAGC	4 cut(s)	146, 313, 369, 406
Bsh1236I	CGCG	2 cut(s)	183, 463
BshFI	GGCC	4 cut(s)	8, 426, 470, 511
BsiSI	CCGG	4 cut(s)	45, 102, 194, 314
BslI	CCNNNNNNNGG	1 cut(s)	319
BsnI	GGCC	4 cut(s)	8, 426, 470, 511
Bsp1286I	GDGCHC	2 cut(s)	264, 348
Bsp143I	GATC	2 cut(s)	547, 605
BspACI	CCGC	5 cut(s)	183, 248, 461, 502, 508
BspANI	GGCC	4 cut(s)	8, 426, 470, 511
BspCNI	CTCAG	4 cut(s)	138, 243, 484, 533
BspFNI	CGCG	2 cut(s)	183, 463
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	133, 512
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	2 cut(s)	547, 605
Bst2UI	CCWGG	2 cut(s)	85, 527
Bst4CI	ACNGT	2 cut(s)	113, 413
BstC8I	GCNNGC	2 cut(s)	18, 424
BstDEI	CTNAG	4 cut(s)	125, 251, 492, 520
BstF5I	GGATG	2 cut(s)	36, 322
BstFNI	CGCG	2 cut(s)	183, 463
BstHHI	GCGC	2 cut(s)	362, 465
BstKTI	GATC	2 cut(s)	550, 608
BstMBI	GATC	2 cut(s)	547, 605
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 508
BstNI	CCWGG	2 cut(s)	85, 527
BstSCI	CCNGG	4 cut(s)	43, 83, 312, 525
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	2 cut(s)	264, 348
BstUI	CGCG	2 cut(s)	183, 463
BstV1I	GCAGC	4 cut(s)	146, 313, 369, 406
BstX2I	RGATCY	1 cut(s)	605
BstYI	RGATCY	1 cut(s)	605
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	4 cut(s)	8, 426, 470, 511
BtsCI	GGATG	2 cut(s)	36, 322
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	3 cut(s)	125, 133, 375
Cac8I	GCNNGC	2 cut(s)	18, 424
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	2 cut(s)	362, 465
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	5 cut(s)	7, 59, 87, 469, 510
CviAII	CATG	2 cut(s)	367, 551
DdeI	CTNAG	4 cut(s)	125, 251, 492, 520
DpnI	GATC	2 cut(s)	549, 607
DpnII	GATC	2 cut(s)	547, 605
Eco47I	GGWCC	2 cut(s)	59, 87
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	83, 525
FaeI	CATG	2 cut(s)	370, 554
FaiI	YATR	7 cut(s)	233, 368, 434, 441, 447, 455, 552
FatI	CATG	2 cut(s)	366, 550
Fnu4HI	GCNGC	5 cut(s)	160, 327, 358, 420, 509
FokI	GGATG	2 cut(s)	23, 329
Fsp4HI	GCNGC	5 cut(s)	160, 327, 358, 420, 509
FspBI	CTAG	2 cut(s)	609, 625
GlaI	GCGC	2 cut(s)	361, 464
GluI	GCNGC	5 cut(s)	160, 327, 358, 420, 509
HaeIII	GGCC	4 cut(s)	8, 426, 470, 511
HapII	CCGG	4 cut(s)	45, 102, 194, 314
HhaI	GCGC	2 cut(s)	362, 465
Hin1II	CATG	2 cut(s)	370, 554
Hin6I	GCGC	2 cut(s)	360, 463
HinP1I	GCGC	2 cut(s)	360, 463
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	6 cut(s)	98, 188, 244, 253, 380, 386
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	4 cut(s)	45, 102, 194, 314
HphI	GGTGA	2 cut(s)	183, 611
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	8 cut(s)	41, 63, 136, 270, 385, 493, 523, 577
Hpy188III	TCNNGA	3 cut(s)	367, 537, 557
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	6, 596
HpyCH4III	ACNGT	2 cut(s)	113, 413
HpyCH4V	TGCA	4 cut(s)	231, 329, 422, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 508
HpyF3I	CTNAG	4 cut(s)	125, 251, 492, 520
Hsp92II	CATG	2 cut(s)	370, 554
HspAI	GCGC	2 cut(s)	360, 463
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	547, 605
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	4 cut(s)	146, 313, 369, 406
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	2 cut(s)	609, 625
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	2 cut(s)	549, 607
MboI	GATC	2 cut(s)	547, 605
MboII	GAAGA	2 cut(s)	224, 285
MfeI	CAATTG	2 cut(s)	91, 563
MflI	RGATCY	1 cut(s)	605
MhlI	GDGCHC	2 cut(s)	264, 348
MluCI	AATT	4 cut(s)	68, 91, 174, 563
MlyI	GAGTC	3 cut(s)	197, 253, 262
MmeI	TCCRAC	3 cut(s)	64, 86, 159
MnlI	CCTC	2 cut(s)	133, 498
MseI	TTAA	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	4 cut(s)	45, 102, 194, 314
MspR9I	CCNGG	4 cut(s)	45, 85, 314, 527
MunI	CAATTG	2 cut(s)	91, 563
MvaI	CCWGG	2 cut(s)	85, 527
MvnI	CGCG	2 cut(s)	183, 463
MwoI	GCNNNNNNNGC	2 cut(s)	156, 508
NciI	CCSGG	2 cut(s)	45, 314
NdeII	GATC	2 cut(s)	547, 605
NlaIII	CATG	2 cut(s)	370, 554
NlaIV	GGNNCC	2 cut(s)	133, 512
NmuCI	GTSAC	1 cut(s)	189
PagI	TCATGA	1 cut(s)	366
PfeI	GAWTC	3 cut(s)	98, 380, 386
PkrI	GCNGC	5 cut(s)	161, 328, 359, 421, 510
PleI	GAGTC	3 cut(s)	196, 252, 261
PpsI	GAGTC	3 cut(s)	196, 252, 261
Psp6I	CCWGG	2 cut(s)	83, 525
PspGI	CCWGG	2 cut(s)	83, 525
PspN4I	GGNNCC	2 cut(s)	133, 512
PspPI	GGNCC	5 cut(s)	7, 59, 87, 469, 510
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	605
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	5 cut(s)	160, 327, 358, 420, 509
Sau3AI	GATC	2 cut(s)	547, 605
Sau96I	GGNCC	5 cut(s)	7, 59, 87, 469, 510
SchI	GAGTC	3 cut(s)	197, 253, 262
ScrFI	CCNGG	4 cut(s)	45, 85, 314, 527
SduI	GDGCHC	2 cut(s)	264, 348
SetI	ASST	5 cut(s)	76, 89, 207, 328, 421
SfaNI	GCATC	1 cut(s)	542
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	2 cut(s)	59, 87
Sse9I	AATT	4 cut(s)	68, 91, 174, 563
SsiI	CCGC	5 cut(s)	183, 248, 461, 502, 508
SspMI	CTAG	2 cut(s)	609, 625
StyD4I	CCNGG	4 cut(s)	43, 83, 312, 525
TaaI	ACNGT	2 cut(s)	113, 413
TaqI	TCGA	2 cut(s)	538, 556
TasI	AATT	4 cut(s)	68, 91, 174, 563
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	3 cut(s)	98, 380, 386
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	3 cut(s)	125, 133, 382
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	4 cut(s)	159, 326, 357, 419
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	2 cut(s)	383, 428
TspRI	CASTG	3 cut(s)	125, 133, 382
VpaK11BI	GGWCC	2 cut(s)	59, 87
XspI	CTAG	2 cut(s)	609, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.