Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0012925

Physical Location & Seq

Genomic Coordinates Forward (+)

45267043 .. 45269558

Gene Structure 2516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGTCCCGCAGGCTTTCCATTCTCTGTTCCCATCTCCGCCCCGGTTCGGGTCCCGCCCCGACCCGACAGATTCTCGTTTCCAGGTCCATTTGTGACGCTAACCAGCAACCTAGTGATTCCGACAAGGGAAGTGACCAAAACGACTGCGTTTTCTGCAGAATCATACGCGGTGAATCCCCTGCTTTCAAGATTTACGAGGATGATGTTTGCCTCTGTATATTGGACACACATCCGCTGAGTCGTGGGCATTCTCTTATCATCCCAAGGTCTCATTTTCCTTCACTGAAATCAACACCTCCAGATGTGGTGGCTGCAATGTGTTCAAAAGTGCCCTTCATCAGCAGTGCAATCATGAAAGCTACTGGTTCTGATTCATTCAACTTGTTAGTTAACAACGGTACAGCTGCAGGCCAAGTTATATTTCATACTCATATTCACATAATTCCGCGGAAGGCCCTTGATTGCCTATGGGCTTCTGAGAGTTTACGGAGGCGGCCCCTGAACATAGACCAGGAAGCATCTCGACTTGCAGACCATGTTCGAGAGCAACTATCATTATCAGACAACTCTAAAGATAACAAAAATGAAGTATCTAGTCTTACCGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

204

Amino Acids

22.4

Weight (kDa)

7.63

Isoelectric Point (pI)

56.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	50 - 150	5.4e-11	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	57 - 152	8.1e-23	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48545 AT5G48545 AT5G48545
fragaria_vesca	FvH4_2g18050
malus_domestica	MD05G1165000.v1.1 MD10G1154300.v1.1
prunus_persica	Prupe.8G193200_v2.0.a1
pyrus_communis	pycom05g15360 pycom10g13340
rosa_chinensis	RchiOBHm_Chr6g0283441
rosa_laevigata	RLG00000012826
rosa_multiflora	Rmu_sc0004959.1_g000018
rosa_rugosa	Rorug06G0154200
rosa_samantha	Rh6AG266500 Rh6BG269000 Rh6CG268900 Rh6DG262300
rosa_wichuraiana	Rw6G023070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	171, 451
AciI	CCGC	8 cut(s)	10, 40, 57, 171, 236, 449, 451, 496
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	2 cut(s)	49, 50
AgsI	TTSAA	3 cut(s)	190, 327, 382
AjnI	CCWGG	2 cut(s)	83, 513
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	2 cut(s)	362, 407
AluI	AGCT	2 cut(s)	362, 407
Alw26I	GTCTC	1 cut(s)	276
AoxI	GGCC	3 cut(s)	412, 456, 497
ApeKI	GCWGC	2 cut(s)	314, 407
AspS9I	GGNCC	4 cut(s)	53, 87, 457, 498
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	2 cut(s)	53, 87
BaeGI	GKGCMC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	301, 394
BccI	CCATC	1 cut(s)	42
BciT130I	CCWGG	2 cut(s)	85, 515
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	3 cut(s)	114, 597, 613
BfmI	CTRYAG	2 cut(s)	157, 408
BisI	GCNGC	3 cut(s)	315, 408, 497
BlsI	GCNGC	3 cut(s)	316, 409, 498
Bme1390I	CCNGG	3 cut(s)	45, 85, 515
Bme18I	GGWCC	2 cut(s)	53, 87
BmgT120I	GGNCC	4 cut(s)	53, 87, 457, 498
BmiI	GGNNCC	3 cut(s)	54, 55, 500
BmrFI	CCNGG	3 cut(s)	45, 85, 515
BmsI	GCATC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	43, 266, 449
BsaWI	WCCGGW	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 50
Bse1I	ACTGG	1 cut(s)	370
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	85, 515
BseDI	CCNNGG	3 cut(s)	43, 266, 449
BseGI	GGATG	3 cut(s)	208, 232, 261
BseLI	CCNNNNNNNGG	2 cut(s)	49, 50
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	230, 471
BseNI	ACTGG	1 cut(s)	370
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	301, 394
Bsh1236I	CGCG	2 cut(s)	171, 451
BshFI	GGCC	3 cut(s)	414, 458, 499
BsiSI	CCGG	2 cut(s)	45, 606
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	49, 50
BsmAI	GTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	3 cut(s)	414, 458, 499
Bso31I	GGTCTC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	336
BspACI	CCGC	8 cut(s)	10, 40, 57, 171, 236, 449, 451, 496
BspANI	GGCC	3 cut(s)	414, 458, 499
BspCNI	CTCAG	2 cut(s)	231, 472
BspFNI	CGCG	2 cut(s)	171, 451
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	3 cut(s)	54, 55, 500
BspMAI	CTGCAG	2 cut(s)	161, 412
BspTNI	GGTCTC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	3 cut(s)	43, 266, 449
BssT1I	CCWWGG	1 cut(s)	266
Bst2UI	CCWGG	2 cut(s)	85, 515
Bst4CI	ACNGT	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	14, 412
BstDEI	CTNAG	2 cut(s)	239, 480
BstDSI	CCRYGG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	208, 232, 261
BstFNI	CGCG	2 cut(s)	171, 451
BstMAI	GTCTC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	2 cut(s)	85, 515
BstSCI	CCNGG	3 cut(s)	43, 83, 513
BstSFI	CTRYAG	2 cut(s)	157, 408
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	2 cut(s)	171, 451
BstV1I	GCAGC	2 cut(s)	301, 394
BsuRI	GGCC	3 cut(s)	414, 458, 499
BtgI	CCRYGG	1 cut(s)	449
BtsCI	GGATG	3 cut(s)	208, 232, 261
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	284, 352
Cac8I	GCNNGC	2 cut(s)	14, 412
CciI	TCATGA	1 cut(s)	354
Cfr13I	GGNCC	4 cut(s)	53, 87, 457, 498
Cfr42I	CCGCGG	1 cut(s)	452
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	2 cut(s)	355, 539
CviJI	RGCY	8 cut(s)	16, 314, 362, 407, 414, 458, 476, 499
CviKI_1	RGCY	8 cut(s)	16, 314, 362, 407, 414, 458, 476, 499
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	2 cut(s)	239, 480
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	276
Eco47I	GGWCC	2 cut(s)	53, 87
EcoO109I	RGGNCCY	2 cut(s)	53, 457
EcoRII	CCWGG	2 cut(s)	83, 513
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	2 cut(s)	358, 542
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	2 cut(s)	354, 538
FauI	CCCGC	2 cut(s)	17, 64
Fnu4HI	GCNGC	3 cut(s)	315, 408, 497
FokI	GGATG	3 cut(s)	215, 219, 248
Fsp4HI	GCNGC	3 cut(s)	315, 408, 497
FspBI	CTAG	3 cut(s)	114, 597, 613
GluI	GCNGC	3 cut(s)	315, 408, 497
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	414, 458, 499
HapII	CCGG	2 cut(s)	45, 606
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	358, 542
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	7 cut(s)	5, 73, 119, 162, 176, 241, 374
HpaI	GTTAAC	1 cut(s)	394
HpaII	CCGG	2 cut(s)	45, 606
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	394, 488
Hpy188I	TCNGA	4 cut(s)	124, 373, 481, 565
Hpy188III	TCNNGA	5 cut(s)	190, 302, 355, 525, 545
Hpy8I	GTNNAC	2 cut(s)	394, 488
HpyAV	CCTTC	3 cut(s)	291, 346, 448
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4V	TGCA	5 cut(s)	159, 317, 350, 410, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	2 cut(s)	239, 480
Hsp92II	CATG	2 cut(s)	358, 542
KflI	GGGWCCC	1 cut(s)	53
KspAI	GTTAAC	1 cut(s)	394
KspI	CCGCGG	1 cut(s)	452
Lsp1109I	GCAGC	2 cut(s)	301, 394
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	3 cut(s)	114, 597, 613
MaeIII	GTNAC	2 cut(s)	95, 134
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	1 cut(s)	444
MlyI	GAGTC	2 cut(s)	14, 250
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	4 cut(s)	193, 224, 309, 486
MseI	TTAA	1 cut(s)	393
MspA1I	CMGCKG	3 cut(s)	238, 407, 451
MspI	CCGG	2 cut(s)	45, 606
MspR9I	CCNGG	3 cut(s)	45, 85, 515
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	2 cut(s)	85, 515
MvnI	CGCG	2 cut(s)	171, 451
MwoI	GCNNNNNNNGC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	45
NlaIII	CATG	2 cut(s)	358, 542
NlaIV	GGNNCC	3 cut(s)	54, 55, 500
NmuCI	GTSAC	2 cut(s)	95, 134
PagI	TCATGA	1 cut(s)	354
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	5 cut(s)	73, 119, 162, 176, 374
PkrI	GCNGC	3 cut(s)	316, 409, 498
PleI	GAGTC	2 cut(s)	13, 249
PpsI	GAGTC	2 cut(s)	13, 249
PpuMI	RGGWCCY	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	83, 513
PspGI	CCWGG	2 cut(s)	83, 513
PspN4I	GGNNCC	3 cut(s)	54, 55, 500
PspPI	GGNCC	4 cut(s)	53, 87, 457, 498
PspPPI	RGGWCCY	1 cut(s)	53
PstI	CTGCAG	2 cut(s)	161, 412
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SacII	CCGCGG	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	3 cut(s)	315, 408, 497
Sau96I	GGNCC	4 cut(s)	53, 87, 457, 498
SchI	GAGTC	2 cut(s)	14, 250
ScrFI	CCNGG	3 cut(s)	45, 85, 515
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	6 cut(s)	89, 115, 272, 301, 364, 409
SfaNI	GCATC	1 cut(s)	530
SfcI	CTRYAG	2 cut(s)	157, 408
Sfr303I	CCGCGG	1 cut(s)	452
SgrBI	CCGCGG	1 cut(s)	452
SinI	GGWCC	2 cut(s)	53, 87
Sse9I	AATT	1 cut(s)	444
SsiI	CCGC	8 cut(s)	10, 40, 57, 171, 236, 449, 451, 496
SspMI	CTAG	3 cut(s)	114, 597, 613
StyD4I	CCNGG	3 cut(s)	43, 83, 513
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	401
TaqI	TCGA	2 cut(s)	526, 544
TasI	AATT	1 cut(s)	444
TauI	GCSGC	1 cut(s)	499
TfiI	GAWTC	5 cut(s)	73, 119, 162, 176, 374
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	2 cut(s)	291, 352
TseFI	GTSAC	2 cut(s)	95, 134
TseI	GCWGC	2 cut(s)	314, 407
Tsp45I	GTSAC	2 cut(s)	95, 134
TspDTI	ATGAA	5 cut(s)	328, 366, 371, 416, 603
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	2 cut(s)	291, 352
VpaK11BI	GGWCC	2 cut(s)	53, 87
XspI	CTAG	3 cut(s)	114, 597, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.