Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012925

Physical Location & Seq

Genomic Coordinates Forward (+)

29352843 .. 29355506

Gene Structure 2664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1165000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGGCCCGAAGGCTCGCCATGATCTGCTCCCATATCCTACCCGGTTTGATTCCGGCTACGACCCGATTAGCTCCCGTTGCTAGGTCCAATTGCCATTCCTGTTTGAACAGTAAGCAGTGGCCCAGTGGCTCCGACGAGGGGAATAGCCAAAACGGCTGCGTTTTCTGTAAAATTATTCGCGGCGAGTCACCGGCTTTTAAGCTCTACGAAGATGATGTTTGCTTGTGCATATTGGATACGAATCCGCTGAGTCGTGGGCATTCTCTGGTTATCCCCAAATCGCATTTTTCTTCGTTGAAAGCCACACCTCCGGATGTGGTAGCTGCAATGTGTTCAAAAGTGCCCTTTATCAGCAGCGCAATCATGAAAGCCACTGGTTCTGATTCGTTCAACTTGTTAGTTAACAACGGCACAGCTGCAGGCCAAGTTATATTTCATACTCATATTCACATAATACCGCGCAAGGCCCTTGATAGCCTCTGGGCTTCTGAGGGTTTGCGGAGGTGGCCCCTGAACGTAGATCGGGAAGCATCTCGACTTGCAGATCTTGTTCGAGAGCAATTGTCATTATCAGAAAACTCCAGAAACAGCAAAGGTGAAGGATCTAGCCTTACCGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

209

Amino Acids

22.59

Weight (kDa)

8.46

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	54 - 154	5e-12	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	61 - 156	5.8e-23	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48545 AT5G48545 AT5G48545
fragaria_vesca	FvH4_2g18050
malus_domestica	MD05G1165000.v1.1 MD10G1154300.v1.1
prunus_persica	Prupe.8G193200_v2.0.a1
pyrus_communis	pycom05g15360 pycom10g13340
rosa_chinensis	RchiOBHm_Chr6g0283441
rosa_laevigata	RLG00000012826
rosa_multiflora	Rmu_sc0004959.1_g000018
rosa_rugosa	Rorug06G0154200
rosa_samantha	Rh6AG266500 Rh6BG269000 Rh6CG268900 Rh6DG262300
rosa_wichuraiana	Rw6G023070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	183, 463
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	4 cut(s)	183, 248, 461, 502
AclWI	GGATC	1 cut(s)	613
AfiI	CCNNNNNNNGG	2 cut(s)	84, 141
AgsI	TTSAA	4 cut(s)	109, 301, 339, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	4 cut(s)	74, 205, 326, 419
AluI	AGCT	4 cut(s)	74, 205, 326, 419
AlwI	GGATC	1 cut(s)	613
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	5 cut(s)	6, 122, 424, 468, 509
ApeKI	GCWGC	4 cut(s)	159, 326, 357, 419
AspLEI	GCGC	2 cut(s)	362, 465
AspS9I	GGNCC	5 cut(s)	7, 87, 123, 469, 510
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	2 cut(s)	183, 611
AvaII	GGWCC	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	348
BbvI	GCAGC	4 cut(s)	146, 313, 369, 406
BceAI	ACGGC	2 cut(s)	172, 427
BciVI	GTATCC	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	45
BfaI	CTAG	3 cut(s)	84, 609, 625
BfmI	CTRYAG	1 cut(s)	420
BfuI	GTATCC	1 cut(s)	232
BglI	GCCNNNNNGGC	1 cut(s)	156
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	5 cut(s)	160, 184, 327, 358, 420
BlsI	GCNGC	5 cut(s)	161, 185, 328, 359, 421
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	5 cut(s)	7, 87, 123, 469, 510
BmiI	GGNNCC	2 cut(s)	133, 512
BmrFI	CCNGG	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	542
BmuI	ACTGGG	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	568
BpuMI	CCSGG	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	243
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 141
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	126, 382
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	243
BseAI	TCCGGA	1 cut(s)	313
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	84, 141
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	242, 483
BseNI	ACTGG	2 cut(s)	126, 382
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	4 cut(s)	146, 313, 369, 406
Bsh1236I	CGCG	2 cut(s)	183, 463
BshFI	GGCC	5 cut(s)	8, 124, 426, 470, 511
BsiSI	CCGG	4 cut(s)	45, 56, 194, 314
BslI	CCNNNNNNNGG	2 cut(s)	84, 141
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	5 cut(s)	8, 124, 426, 470, 511
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	24, 523, 547, 605
BspACI	CCGC	4 cut(s)	183, 248, 461, 502
BspANI	GGCC	5 cut(s)	8, 124, 426, 470, 511
BspCNI	CTCAG	2 cut(s)	243, 484
BspEI	TCCGGA	1 cut(s)	313
BspFNI	CGCG	2 cut(s)	183, 463
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	133, 512
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	126, 382
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	4 cut(s)	24, 523, 547, 605
Bst4CI	ACNGT	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	18, 424
BstDEI	CTNAG	2 cut(s)	251, 492
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	2 cut(s)	183, 463
BstHHI	GCGC	2 cut(s)	362, 465
BstKTI	GATC	4 cut(s)	27, 526, 550, 608
BstMBI	GATC	4 cut(s)	24, 523, 547, 605
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 156, 508
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	348
BstUI	CGCG	2 cut(s)	183, 463
BstV1I	GCAGC	4 cut(s)	146, 313, 369, 406
BstX2I	RGATCY	2 cut(s)	547, 605
BstYI	RGATCY	2 cut(s)	547, 605
BsuI	GTATCC	1 cut(s)	232
BsuRI	GGCC	5 cut(s)	8, 124, 426, 470, 511
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	3 cut(s)	125, 133, 375
Cac8I	GCNNGC	2 cut(s)	18, 424
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	2 cut(s)	362, 465
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	5 cut(s)	7, 87, 123, 469, 510
CviAII	CATG	2 cut(s)	22, 367
DdeI	CTNAG	2 cut(s)	251, 492
DpnI	GATC	4 cut(s)	26, 525, 549, 607
DpnII	GATC	4 cut(s)	24, 523, 547, 605
Eco47I	GGWCC	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	469
FaeI	CATG	2 cut(s)	25, 370
FaiI	YATR	8 cut(s)	23, 36, 233, 368, 434, 441, 447, 455
FatI	CATG	2 cut(s)	21, 366
Fnu4HI	GCNGC	5 cut(s)	160, 184, 327, 358, 420
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	5 cut(s)	160, 184, 327, 358, 420
FspBI	CTAG	3 cut(s)	84, 609, 625
GlaI	GCGC	2 cut(s)	361, 464
GluI	GCNGC	5 cut(s)	160, 184, 327, 358, 420
GsuI	CTGGAG	1 cut(s)	568
HaeIII	GGCC	5 cut(s)	8, 124, 426, 470, 511
HapII	CCGG	4 cut(s)	45, 56, 194, 314
HhaI	GCGC	2 cut(s)	362, 465
Hin1II	CATG	2 cut(s)	25, 370
Hin6I	GCGC	2 cut(s)	360, 463
HinP1I	GCGC	2 cut(s)	360, 463
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	5 cut(s)	52, 188, 244, 253, 386
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	4 cut(s)	45, 56, 194, 314
HphI	GGTGA	2 cut(s)	183, 611
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	4 cut(s)	136, 385, 493, 577
Hpy188III	TCNNGA	6 cut(s)	314, 367, 527, 537, 557, 585
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	6, 596
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	4 cut(s)	231, 329, 422, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 156, 508
HpyF3I	CTNAG	2 cut(s)	251, 492
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	2 cut(s)	25, 370
HspAI	GCGC	2 cut(s)	360, 463
Kpn2I	TCCGGA	1 cut(s)	313
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	4 cut(s)	24, 523, 547, 605
LmnI	GCTCC	3 cut(s)	35, 79, 137
Lsp1109I	GCAGC	4 cut(s)	146, 313, 369, 406
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	3 cut(s)	84, 609, 625
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	4 cut(s)	26, 525, 549, 607
MboI	GATC	4 cut(s)	24, 523, 547, 605
MboII	GAAGA	2 cut(s)	224, 285
MfeI	CAATTG	2 cut(s)	91, 563
MflI	RGATCY	2 cut(s)	547, 605
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	3 cut(s)	91, 174, 563
MlyI	GAGTC	2 cut(s)	197, 262
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	5 cut(s)	133, 321, 487, 491, 498
MroI	TCCGGA	1 cut(s)	313
MseI	TTAA	2 cut(s)	201, 405
MspA1I	CMGCKG	2 cut(s)	250, 419
MspI	CCGG	4 cut(s)	45, 56, 194, 314
MspR9I	CCNGG	1 cut(s)	45
MunI	CAATTG	2 cut(s)	91, 563
Mva1269I	GAATGC	1 cut(s)	262
MvnI	CGCG	2 cut(s)	183, 463
MwoI	GCNNNNNNNGC	3 cut(s)	80, 156, 508
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	4 cut(s)	24, 523, 547, 605
NlaIII	CATG	2 cut(s)	25, 370
NlaIV	GGNNCC	2 cut(s)	133, 512
NmuCI	GTSAC	1 cut(s)	189
PagI	TCATGA	1 cut(s)	366
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	3 cut(s)	52, 244, 386
PkrI	GCNGC	5 cut(s)	161, 185, 328, 359, 421
PleI	GAGTC	2 cut(s)	196, 261
PpsI	GAGTC	2 cut(s)	196, 261
PspN4I	GGNNCC	2 cut(s)	133, 512
PspPI	GGNCC	5 cut(s)	7, 87, 123, 469, 510
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	2 cut(s)	547, 605
PvuII	CAGCTG	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	201, 405
SatI	GCNGC	5 cut(s)	160, 184, 327, 358, 420
Sau3AI	GATC	4 cut(s)	24, 523, 547, 605
Sau96I	GGNCC	5 cut(s)	7, 87, 123, 469, 510
SchI	GAGTC	2 cut(s)	197, 262
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	9 cut(s)	76, 89, 207, 313, 328, 421, 509, 522, 601
SfaNI	GCATC	1 cut(s)	542
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	87
Sse9I	AATT	3 cut(s)	91, 174, 563
SsiI	CCGC	4 cut(s)	183, 248, 461, 502
SspMI	CTAG	3 cut(s)	84, 609, 625
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	2 cut(s)	538, 556
TasI	AATT	3 cut(s)	91, 174, 563
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	3 cut(s)	52, 244, 386
Tru1I	TTAA	2 cut(s)	201, 405
Tru9I	TTAA	2 cut(s)	201, 405
TscAI	CASTG	3 cut(s)	125, 133, 382
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	4 cut(s)	159, 326, 357, 419
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	2 cut(s)	383, 428
TspRI	CASTG	3 cut(s)	125, 133, 382
VpaK11BI	GGWCC	1 cut(s)	87
XspI	CTAG	3 cut(s)	84, 609, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.