Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012925

Physical Location & Seq

Genomic Coordinates Forward (+)

22122544 .. 22128893

Gene Structure 6350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0154200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2133 bp

ATGGGCGACAACACTCCTGCCGCAACTGGGCCGGGCCCAGACTCCAACGGCGTGGCGGCGGCGGCGGCTGAGAGGACGCCAGAGGAGCTCGTAGCCAAGTCCATCGCTCCGGTGAAGAAACAGTTCCTTCGCCCTCCTCCCGTCAGACCTTGCTCTAAGGATCAAAACGACGCCGTCTGTGAGGGAAACGCGAAGCCTGCACAGTCGAACATAGTGAAGGAGAAGAAGTCCAAGCGGCAGCTTAAGCGTGAACGCCGCGAGGTACAGAAATCGCCCCTCGGTATCTGTCCAGAGGTAGCAAAGAAAGGAGATGTTAGTCGGTGTCCATATAATGATAAGTGCCGCTACAGCCACGACATAGAAGCCTATAAGGCTCAGAAACCTGAGGATATAGAGGGAGAATGTCCTTTTATGGCTATCGATGAGCCATGCCCTTATGGTTTGTCATGTAGGTTCTTGGGTACACATAAAAATGGTGTTGCAGATGGAGATGTGAATGCTCGTAGAAGAAGCTCTGAGATGAATGGATTAAGCAAAAATGTTCAAAAGCTTTTGTGGAAAAATAAAATGAAGTTCACCAAGGCCGATGCCAAACTCAAGGCTCTTGGTCTCATGGGGCATGCCAATTCAAAAATAATTGCCATGTCAAAGGAGAATGGGTCGGTGGTTTCAAAGAATTGTGATGTTACTGATGGAAATGGCTGTAGTGAATTTCCCAGTAAAACAGATGATAAAGTGGAGTTGACTGCTGAAATAAAAGAAGAGGGACGTGTTGATGAAAAGTTTCCATCTGATGAAATGGAGTTGTCTGCTGAAGTGAAAGAAGAGGGAGGTGCTAATGAAACATTTCCATCTGACGATTCTAGGCCTTCAAAGAAGTCAAGATCTGTAATTGAAGAGGAGTTTGGTTTTGGTGAAGCAGATTATGGAGGTGTGAGAGCTGCAGGAAAAGTTGTTGGGCAAACCTGCACGGAACCTGAACCAGAAGCTGCAGCTAACATTGAATTCTCAGAGAATGATAGAAGTTTAAAGACACACCCACGTGAAAAGAAGCTTATTGACTTCAGAGAAAAGTTGTACCTTGCACCTCTGACCACAGTCGGAAATCTTCCATTTCGAAGGGTTTGCAAAGGTTTAGGGGCAGATATAACATGTGGTGAAATGGCAATGTGTACAAATCTTTTGCAGGGTCAAGCGTCGGAATGGGCCTTGCTGAGGAGACATTCATCTGAGGATTTGTTTGGCGTTCAGATATGTGGGGCATATCCAGACACCGTAGCACGCACTGTTGAACTTATAGAACAGGAATGTACCGTAGACTTCATTGATATAAATATGGGGTGCCCAATAGATATTGTTGTGAACAAGGGTGCTGGCTCAGCTCTTCTAACAAAACCAATGCGAATGAAAGGCATTGTGCAAGCAGCTTCTGGTACAGTTGACATTCCTATGACTATCAAGGTCCGCACAGCCTATTTTGAGGGGAAAAATCGCATTGACTCGCTTATTGCTGACATGGACAACTGGGGAGCCAGTGCAGTAACAATACATGGTCGATCACGACAGCAACGCTACAGCAAGCTTGCAGATTGGGAATATGTGTACCAGTGTGCTAAAAAAGCCCCTGATTCTTTGCAAGTCCTTGGAAATGGAGATGTATTTTCGTATGTAGATTGGAACAAGCACAAGGCTGAGTGCCCTGAACTGTCTTCATGCATGATTGCTCGAGGAGCACTAATTAAGCCTTGGATTTTTACAGAAATAAAGGAGCAGAGGCACTGGGACATCACTTCTGGGGAGCGATTTAATATTTTGAAGGATTATGTACGTTGTGGCCTTGAACATTGGGGCTCTGACACAAAAGGTGTCGAGACAACTAGGCGTTTTCTGTTAGAATGGCTTAGCTACACTTGTAGATATGTACCTGTTGGTCTTCTAGATGTCATCCCACAACGACTGAGCTGGCGCCCACCATCTTATTTTGGACGTGATGACCTTGAGACACTAATGGCTTCTGATTCTGCCGCTGACTGGGTTAGGCTCTCTGAGATGTTGCTTGGGAAGGTTCCAGATGGTTTCACATTTGCACCAAAGCATAAATCCAATGCTTACGACCGAGCAGAAAACGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

710

Amino Acids

78.69

Weight (kDa)

6.45

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_DUS3L	PF25585	93 - 126	1.6e-10	DUS3L CCCH zinc finger domain
zf-CCCH_DUS3L	PF25585	127 - 158	2.7e-07	DUS3L CCCH zinc finger domain
Dus	PF01207	361 - 615	1e-48	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48545 AT5G48545 AT5G48545
fragaria_vesca	FvH4_2g18050
malus_domestica	MD05G1165000.v1.1 MD10G1154300.v1.1
prunus_persica	Prupe.8G193200_v2.0.a1
pyrus_communis	pycom05g15360 pycom10g13340
rosa_chinensis	RchiOBHm_Chr6g0283441
rosa_laevigata	RLG00000012826
rosa_multiflora	Rmu_sc0004959.1_g000018
rosa_rugosa	Rorug06G0154200
rosa_samantha	Rh6AG266500 Rh6BG269000 Rh6CG268900 Rh6DG262300
rosa_wichuraiana	Rw6G023070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	974
AccB1I	GGYRCC	2 cut(s)	1341, 1965
AccI	GTMKAC	1 cut(s)	1317
AccII	CGCG	2 cut(s)	191, 258
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	710, 1004
AcuI	CTGAAG	2 cut(s)	834, 1048
AcvI	CACGTG	1 cut(s)	1043
AcyI	GRCGYC	3 cut(s)	77, 171, 1966
AfaI	GTAC	9 cut(s)	264, 463, 1079, 1174, 1312, 1435, 1604, 1827, 1923
AfiI	CCNNNNNNNGG	3 cut(s)	27, 1215, 2031
AflII	CTTAAG	1 cut(s)	242
AflIII	ACRYGT	2 cut(s)	769, 1151
AgsI	TTSAA	9 cut(s)	545, 630, 672, 873, 896, 1004, 1292, 1816, 1841
AjiI	CACGTC	2 cut(s)	770, 1988
AjuI	GAANNNNNNNTTGG	2 cut(s)	888, 920
AleI	CACNNNNGTG	1 cut(s)	1041
Alw21I	GWGCWC	2 cut(s)	90, 1735
Alw26I	GTCTC	4 cut(s)	614, 1213, 1865, 1994
AlwI	GGATC	1 cut(s)	168
AlwNI	CAGNNNCTG	2 cut(s)	989, 1430
Ama87I	CYCGRG	1 cut(s)	1725
AoxI	GGCC	6 cut(s)	29, 34, 582, 866, 1206, 1834
ApaI	GGGCCC	1 cut(s)	38
ApeKI	GCWGC	5 cut(s)	238, 941, 989, 992, 1424
ApoI	RAATTY	2 cut(s)	710, 1004
Asp700I	GAANNNNTTC	3 cut(s)	122, 783, 846
AspLEI	GCGC	1 cut(s)	1968
AspS9I	GGNCC	5 cut(s)	29, 34, 35, 1206, 1462
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	4 cut(s)	124, 568, 926, 1169
AsuII	TTCGAA	1 cut(s)	1117
AvaI	CYCGRG	1 cut(s)	1725
AvaII	GGWCC	1 cut(s)	1462
AxyI	CCTNAGG	1 cut(s)	384
BaeGI	GKGCMC	3 cut(s)	38, 1346, 1700
BanI	GGYRCC	2 cut(s)	1341, 1965
BanII	GRGCYC	3 cut(s)	38, 90, 1853
BbrPI	CACGTG	1 cut(s)	1043
BbsI	GAAGAC	2 cut(s)	1701, 1925
Bbv12I	GWGCWC	2 cut(s)	90, 1735
BbvCI	CCTCAGC	1 cut(s)	1214
BbvI	GCAGC	5 cut(s)	250, 928, 976, 1004, 1436
BccI	CCATC	7 cut(s)	110, 479, 686, 796, 859, 1981, 2066
BceAI	ACGGC	2 cut(s)	64, 158
BcgI	CGANNNNNNTGC	2 cut(s)	1107, 1141
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	4 cut(s)	614, 1213, 1865, 1994
BfaI	CTAG	3 cut(s)	864, 1878, 1937
BfmI	CTRYAG	5 cut(s)	346, 703, 942, 990, 1573
BfoI	RGCGCY	1 cut(s)	1969
BfrI	CTTAAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	974
BglI	GCCNNNNNGGC	1 cut(s)	371
BglII	AGATCT	1 cut(s)	884
BlpI	GCTNAGC	2 cut(s)	1378, 1901
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	1462
BmeT110I	CYCGRG	1 cut(s)	1725
BmgBI	CACGTC	2 cut(s)	770, 1988
BmgT120I	GGNCC	5 cut(s)	29, 34, 35, 1206, 1462
BmiI	GGNNCC	6 cut(s)	36, 975, 1343, 1531, 1967, 2067
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	5 cut(s)	36, 711, 1534, 1789, 2041
BmsI	GCATC	1 cut(s)	577
BmuI	ACTGGG	5 cut(s)	36, 711, 1534, 1789, 2041
BoxI	GACNNNNGTC	1 cut(s)	1097
BpiI	GAAGAC	2 cut(s)	1701, 1925
Bpu10I	CCTNAGC	1 cut(s)	1214
Bpu1102I	GCTNAGC	2 cut(s)	1378, 1901
Bpu14I	TTCGAA	1 cut(s)	1117
BpuEI	CTTGAG	2 cut(s)	581, 2018
BpuMI	CCSGG	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	420
BsaAI	YACGTR	1 cut(s)	1043
BsaHI	GRCGYC	3 cut(s)	77, 171, 1966
BsaI	GGTCTC	1 cut(s)	614
BsaJI	CCNNGG	4 cut(s)	277, 579, 1642, 1745
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 644, 674
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 1215, 2031
Bse1I	ACTGG	7 cut(s)	31, 717, 1529, 1533, 1606, 1784, 2036
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	1173
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	4 cut(s)	277, 579, 1642, 1745
BseGI	GGATG	1 cut(s)	1944
BseLI	CCNNNNNNNGG	3 cut(s)	27, 1215, 2031
BseMI	GCAATG	1 cut(s)	1173
BseNI	ACTGG	7 cut(s)	31, 717, 1529, 1533, 1606, 1784, 2036
BseRI	GAGGAG	5 cut(s)	98, 126, 914, 1231, 1743
BseSI	GKGCMC	3 cut(s)	38, 1346, 1700
BseXI	GCAGC	5 cut(s)	250, 928, 976, 1004, 1436
BsgI	GTGCAG	3 cut(s)	183, 952, 1557
Bsh1236I	CGCG	2 cut(s)	191, 258
Bsh1285I	CGRYCG	1 cut(s)	2116
BshFI	GGCC	6 cut(s)	31, 36, 584, 868, 1208, 1836
BshNI	GGYRCC	2 cut(s)	1341, 1965
BshVI	ATCGAT	1 cut(s)	420
BsiEI	CGRYCG	1 cut(s)	2116
BsiHKAI	GWGCWC	2 cut(s)	90, 1735
BsiHKCI	CYCGRG	1 cut(s)	1725
BsiSI	CCGG	2 cut(s)	32, 110
BslFI	GGGAC	2 cut(s)	780, 1796
BslI	CCNNNNNNNGG	3 cut(s)	27, 1215, 2031
BsmAI	GTCTC	4 cut(s)	614, 1213, 1865, 1994
BsmFI	GGGAC	2 cut(s)	780, 1796
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	6 cut(s)	31, 36, 584, 868, 1208, 1836
Bso31I	GGTCTC	1 cut(s)	614
BsoBI	CYCGRG	1 cut(s)	1725
Bsp119I	TTCGAA	1 cut(s)	1117
Bsp120I	GGGCCC	1 cut(s)	34
Bsp1286I	GDGCHC	6 cut(s)	38, 90, 1346, 1700, 1735, 1853
Bsp1407I	TGTACA	1 cut(s)	1172
Bsp143I	GATC	3 cut(s)	160, 884, 1556
Bsp1720I	GCTNAGC	2 cut(s)	1378, 1901
BspANI	GGCC	6 cut(s)	31, 36, 584, 868, 1208, 1836
BspDI	ATCGAT	1 cut(s)	420
BspFNI	CGCG	2 cut(s)	191, 258
BspLI	GGNNCC	6 cut(s)	36, 975, 1343, 1531, 1967, 2067
BspMAI	CTGCAG	2 cut(s)	946, 994
BspMI	ACCTGC	1 cut(s)	974
BspPI	GGATC	1 cut(s)	168
BspQI	GCTCTTC	1 cut(s)	1389
BspT104I	TTCGAA	1 cut(s)	1117
BspT107I	GGYRCC	2 cut(s)	1341, 1965
BspTI	CTTAAG	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	1173
BsrGI	TGTACA	1 cut(s)	1172
BsrI	ACTGG	7 cut(s)	31, 717, 1529, 1533, 1606, 1784, 2036
BssECI	CCNNGG	4 cut(s)	277, 579, 1642, 1745
BssMI	GATC	3 cut(s)	160, 884, 1556
BssNI	GRCGYC	3 cut(s)	77, 171, 1966
BssT1I	CCWWGG	3 cut(s)	579, 1642, 1745
Bst4CI	ACNGT	8 cut(s)	123, 204, 1099, 1276, 1288, 1315, 1438, 1707
Bst6I	CTCTTC	4 cut(s)	756, 819, 891, 1389
BstACI	GRCGYC	3 cut(s)	77, 171, 1966
BstAFI	CTTAAG	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	1172
BstBAI	YACGTR	1 cut(s)	1043
BstBI	TTCGAA	1 cut(s)	1117
BstC8I	GCNNGC	8 cut(s)	198, 621, 1282, 1375, 1422, 1580, 1584, 1964
BstENI	CCTNNNNNAGG	1 cut(s)	1213
BstF5I	GGATG	1 cut(s)	1944
BstFNI	CGCG	2 cut(s)	191, 258
BstH2I	RGCGCY	1 cut(s)	1969
BstHHI	GCGC	1 cut(s)	1968
BstKTI	GATC	3 cut(s)	163, 887, 1559
BstMAI	GTCTC	4 cut(s)	614, 1213, 1865, 1994
BstMBI	GATC	3 cut(s)	160, 884, 1556
BstMCI	CGRYCG	1 cut(s)	2116
BstNSI	RCATGY	2 cut(s)	623, 1155
BstPAI	GACNNNNGTC	1 cut(s)	1097
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	5 cut(s)	346, 703, 942, 990, 1573
BstSLI	GKGCMC	3 cut(s)	38, 1346, 1700
BstUI	CGCG	2 cut(s)	191, 258
BstV1I	GCAGC	5 cut(s)	250, 928, 976, 1004, 1436
BstV2I	GAAGAC	2 cut(s)	1701, 1925
BstX2I	RGATCY	1 cut(s)	884
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	884
Bsu15I	ATCGAT	1 cut(s)	420
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	6 cut(s)	31, 36, 584, 868, 1208, 1836
BsuTUI	ATCGAT	1 cut(s)	420
BtgZI	GCGATG	1 cut(s)	88
BtrI	CACGTC	2 cut(s)	770, 1988
BtsCI	GGATG	1 cut(s)	1944
BtsIMutI	CAGTG	4 cut(s)	1284, 1540, 1613, 1777
BveI	ACCTGC	1 cut(s)	974
Cac8I	GCNNGC	8 cut(s)	198, 621, 1282, 1375, 1422, 1580, 1584, 1964
CaiI	CAGNNNCTG	2 cut(s)	989, 1430
CfoI	GCGC	1 cut(s)	1968
Cfr13I	GGNCC	5 cut(s)	29, 34, 35, 1206, 1462
ClaI	ATCGAT	1 cut(s)	420
CseI	GACGC	3 cut(s)	85, 179, 1185
Csp6I	GTAC	9 cut(s)	263, 462, 1078, 1173, 1311, 1434, 1603, 1826, 1922
CviQI	GTAC	9 cut(s)	263, 462, 1078, 1173, 1311, 1434, 1603, 1826, 1922
DinI	GGCGCC	1 cut(s)	1967
DpnI	GATC	3 cut(s)	162, 886, 1558
DpnII	GATC	3 cut(s)	160, 884, 1556
DraI	TTTAAA	1 cut(s)	1029
Eam1104I	CTCTTC	4 cut(s)	756, 819, 891, 1389
EarI	CTCTTC	4 cut(s)	756, 819, 891, 1389
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	3 cut(s)	579, 1642, 1745
Eco147I	AGGCCT	1 cut(s)	868
Eco24I	GRGCYC	3 cut(s)	38, 90, 1853
Eco31I	GGTCTC	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	1462
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	834, 1048
Eco72I	CACGTG	1 cut(s)	1043
Eco81I	CCTNAGG	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	1725
EcoICRI	GAGCTC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	1213
EcoRI	GAATTC	1 cut(s)	1004
EcoT14I	CCWWGG	3 cut(s)	579, 1642, 1745
EcoT22I	ATGCAT	1 cut(s)	1718
EcoT38I	GRGCYC	3 cut(s)	38, 90, 1853
EgeI	GGCGCC	1 cut(s)	1967
EheI	GGCGCC	1 cut(s)	1967
ErhI	CCWWGG	3 cut(s)	579, 1642, 1745
FaqI	GGGAC	2 cut(s)	780, 1796
FblI	GTMKAC	1 cut(s)	1317
FokI	GGATG	1 cut(s)	1931
FriOI	GRGCYC	3 cut(s)	38, 90, 1853
FspBI	CTAG	3 cut(s)	864, 1878, 1937
GlaI	GCGC	1 cut(s)	1967
HaeII	RGCGCY	1 cut(s)	1969
HaeIII	GGCC	6 cut(s)	31, 36, 584, 868, 1208, 1836
HapII	CCGG	2 cut(s)	32, 110
HgaI	GACGC	3 cut(s)	85, 179, 1185
HhaI	GCGC	1 cut(s)	1968
Hin1I	GRCGYC	3 cut(s)	77, 171, 1966
Hin6I	GCGC	1 cut(s)	1966
HinP1I	GCGC	1 cut(s)	1966
HincII	GTYRAC	2 cut(s)	744, 1441
HindII	GTYRAC	2 cut(s)	744, 1441
HindIII	AAGCTT	3 cut(s)	548, 1052, 1580
HinfI	GANTC	5 cut(s)	41, 860, 1499, 1628, 2018
HpaII	CCGG	2 cut(s)	32, 110
HphI	GGTGA	4 cut(s)	124, 568, 926, 1169
Hpy166II	GTNNAC	9 cut(s)	251, 464, 576, 744, 1173, 1318, 1363, 1441, 1603
Hpy188III	TCNNGA	7 cut(s)	290, 882, 1268, 1560, 1870, 1937, 2069
Hpy8I	GTNNAC	9 cut(s)	251, 464, 576, 744, 1173, 1318, 1363, 1441, 1603
Hpy99I	CGWCG	2 cut(s)	173, 1201
HpyAV	CCTTC	6 cut(s)	137, 211, 879, 1113, 1810, 2056
HpyCH4III	ACNGT	8 cut(s)	123, 204, 1099, 1276, 1288, 1315, 1438, 1707
HpyCH4IV	ACGT	4 cut(s)	769, 1042, 1828, 1987
HpySE526I	ACGT	4 cut(s)	769, 1042, 1828, 1987
Hsp92I	GRCGYC	3 cut(s)	77, 171, 1966
HspAI	GCGC	1 cut(s)	1966
KasI	GGCGCC	1 cut(s)	1965
Kzo9I	GATC	3 cut(s)	160, 884, 1556
LguI	GCTCTTC	1 cut(s)	1389
LmnI	GCTCC	6 cut(s)	85, 112, 1529, 1730, 1768, 1798
Lsp1109I	GCAGC	5 cut(s)	250, 928, 976, 1004, 1436
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	3 cut(s)	864, 1878, 1937
MaeII	ACGT	4 cut(s)	769, 1042, 1828, 1987
MaeIII	GTNAC	2 cut(s)	685, 1540
MalI	GATC	3 cut(s)	162, 886, 1558
MboI	GATC	3 cut(s)	160, 884, 1556
MflI	RGATCY	1 cut(s)	884
MhlI	GDGCHC	6 cut(s)	38, 90, 1346, 1700, 1735, 1853
MluCI	AATT	7 cut(s)	625, 636, 676, 710, 891, 1004, 1737
Mly113I	GGCGCC	1 cut(s)	1966
MlyI	GAGTC	2 cut(s)	35, 1493
MmeI	TCCRAC	3 cut(s)	69, 1081, 1179
Mph1103I	ATGCAT	1 cut(s)	1718
MroXI	GAANNNNTTC	3 cut(s)	122, 783, 846
MseI	TTAA	5 cut(s)	243, 530, 1028, 1740, 1806
MslI	CAYNNNNRTG	3 cut(s)	471, 1041, 1448
MspA1I	CMGCKG	1 cut(s)	2027
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	2 cut(s)	32, 110
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	502
MvnI	CGCG	2 cut(s)	191, 258
NarI	GGCGCC	1 cut(s)	1966
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	3 cut(s)	160, 884, 1556
NlaIV	GGNNCC	6 cut(s)	36, 975, 1343, 1531, 1967, 2067
NsiI	ATGCAT	1 cut(s)	1718
NspI	RCATGY	2 cut(s)	623, 1155
NspV	TTCGAA	1 cut(s)	1117
OliI	CACNNNNGTG	1 cut(s)	1041
PaeI	GCATGC	1 cut(s)	623
PaeR7I	CTCGAG	1 cut(s)	1725
PceI	AGGCCT	1 cut(s)	868
PciI	ACATGT	1 cut(s)	1151
PciSI	GCTCTTC	1 cut(s)	1389
PctI	GAATGC	1 cut(s)	502
PdmI	GAANNNNTTC	3 cut(s)	122, 783, 846
PfeI	GAWTC	3 cut(s)	860, 1628, 2018
PflFI	GACNNNGTC	1 cut(s)	173
PleI	GAGTC	2 cut(s)	35, 1493
PluTI	GGCGCC	1 cut(s)	1969
PmaCI	CACGTG	1 cut(s)	1043
PmlI	CACGTG	1 cut(s)	1043
PpsI	GAGTC	2 cut(s)	35, 1493
Ppu21I	YACGTR	1 cut(s)	1043
PscI	ACATGT	1 cut(s)	1151
PshAI	GACNNNNGTC	1 cut(s)	1097
Psp124BI	GAGCTC	1 cut(s)	90
PspCI	CACGTG	1 cut(s)	1043
PspN4I	GGNNCC	6 cut(s)	36, 975, 1343, 1531, 1967, 2067
PspOMI	GGGCCC	1 cut(s)	34
PspPI	GGNCC	5 cut(s)	29, 34, 35, 1206, 1462
PspXI	VCTCGAGB	1 cut(s)	1725
PstI	CTGCAG	2 cut(s)	946, 994
PstNI	CAGNNNCTG	2 cut(s)	989, 1430
PsuI	RGATCY	1 cut(s)	884
PsyI	GACNNNGTC	1 cut(s)	173
RsaI	GTAC	9 cut(s)	264, 463, 1079, 1174, 1312, 1435, 1604, 1827, 1923
RsaNI	GTAC	9 cut(s)	263, 462, 1078, 1173, 1311, 1434, 1603, 1826, 1922
RseI	CAYNNNNRTG	3 cut(s)	471, 1041, 1448
SacI	GAGCTC	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	1389
SaqAI	TTAA	5 cut(s)	243, 530, 1028, 1740, 1806
Sau3AI	GATC	3 cut(s)	160, 884, 1556
Sau96I	GGNCC	5 cut(s)	29, 34, 35, 1206, 1462
SchI	GAGTC	2 cut(s)	35, 1493
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	6 cut(s)	38, 90, 1346, 1700, 1735, 1853
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	5 cut(s)	346, 703, 942, 990, 1573
SfoI	GGCGCC	1 cut(s)	1967
Sfr274I	CTCGAG	1 cut(s)	1725
SfuI	TTCGAA	1 cut(s)	1117
SinI	GGWCC	1 cut(s)	1462
SlaI	CTCGAG	1 cut(s)	1725
SmiMI	CAYNNNNRTG	3 cut(s)	471, 1041, 1448
SmlI	CTYRAG	4 cut(s)	242, 596, 1725, 1997
SmoI	CTYRAG	4 cut(s)	242, 596, 1725, 1997
SphI	GCATGC	1 cut(s)	623
Sse9I	AATT	7 cut(s)	625, 636, 676, 710, 891, 1004, 1737
SseBI	AGGCCT	1 cut(s)	868
SspDI	GGCGCC	1 cut(s)	1965
SspI	AATATT	1 cut(s)	1810
SspMI	CTAG	3 cut(s)	864, 1878, 1937
SstI	GAGCTC	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	868
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	3 cut(s)	579, 1642, 1745
TaaI	ACNGT	8 cut(s)	123, 204, 1099, 1276, 1288, 1315, 1438, 1707
TaiI	ACGT	4 cut(s)	772, 1045, 1831, 1990
TaqI	TCGA	6 cut(s)	206, 420, 1117, 1555, 1726, 1869
TaqII	GACCGA	1 cut(s)	2130
TasI	AATT	7 cut(s)	625, 636, 676, 710, 891, 1004, 1737
TatI	WGTACW	1 cut(s)	1172
TauI	GCSGC	9 cut(s)	23, 59, 62, 65, 68, 238, 258, 345, 2027
TfiI	GAWTC	3 cut(s)	860, 1628, 2018
Tru1I	TTAA	5 cut(s)	243, 530, 1028, 1740, 1806
Tru9I	TTAA	5 cut(s)	243, 530, 1028, 1740, 1806
TscAI	CASTG	4 cut(s)	1291, 1540, 1613, 1784
TseI	GCWGC	5 cut(s)	238, 941, 989, 992, 1424
TspDTI	ATGAA	9 cut(s)	536, 584, 792, 810, 855, 1215, 1312, 1421, 1701
TspGWI	ACGGA	1 cut(s)	986
TspRI	CASTG	4 cut(s)	1291, 1540, 1613, 1784
Tth111I	GACNNNGTC	1 cut(s)	173
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	1462
XagI	CCTNNNNNAGG	1 cut(s)	1213
XapI	RAATTY	2 cut(s)	710, 1004
XbaI	TCTAGA	1 cut(s)	1936
XceI	RCATGY	2 cut(s)	623, 1155
XhoI	CTCGAG	1 cut(s)	1725
XmiI	GTMKAC	1 cut(s)	1317
XmnI	GAANNNNTTC	3 cut(s)	122, 783, 846
XspI	CTAG	3 cut(s)	864, 1878, 1937
Zsp2I	ATGCAT	1 cut(s)	1718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.