Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012925

Physical Location & Seq

Genomic Coordinates Forward (+)

15459092 .. 15462104

Gene Structure 3013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTTTTGCCTGAATTATATGGAGTCGCGCAGGCTTTCCATTCTCTGTTCCCACCTCCTCCCCGGTTCGGGTCCTTCCCCGACCCGGCAAATTCCCGTTTCCAGGTCCATTTGTGGTGCTGGTTCGACCAACACTAACCAGCAGCCTAGTGACTCCGACCAAAACGACTGCGTTTTCTGCAAAATCATACGCGGAGAATCACCTGCTTTCAAGATTTACGAGGATGATATTTGCCTCTGTATATTGGACACACATCCGCTGAGTCGTGGGCATTCTCTGATCATCCCAAAATCTCATTTTCCTTCCCTCAAAGCAACACCTCCAGCTGTGGTAGCTGCAATGTGTTCAAAAGTACCCTTTATCAGCAGTGCAATCTTGAAAGCTACTGCTTCTGATTCTTTCAACTTGTTGGTTAACAACGGTACAGCTGCAGGCCAAGTTATATTTCATACTCATATTCACATAATTCCACGCAAGGCACTTGATTGCCTTTGGGCTTCTGAGAGTTTACGGAGGCGACCCCTGAACATAGACCAGGAAGCATCTCGACTTGCAGACCGTGTTCGAGAGCAACTATCATTACCAGACAACTCTGGAGATAGCAAAGACGAAGGATCTAGTCTTACCGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

212

Amino Acids

22.93

Weight (kDa)

7.59

Isoelectric Point (pI)

56.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	57 - 157	1.1e-10	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	64 - 159	1.3e-22	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48545 AT5G48545 AT5G48545
fragaria_vesca	FvH4_2g18050
malus_domestica	MD05G1165000.v1.1 MD10G1154300.v1.1
prunus_persica	Prupe.8G193200_v2.0.a1
pyrus_communis	pycom05g15360 pycom10g13340
rosa_chinensis	RchiOBHm_Chr6g0283441
rosa_laevigata	RLG00000012826
rosa_multiflora	Rmu_sc0004959.1_g000018
rosa_rugosa	Rorug06G0154200
rosa_samantha	Rh6AG266500 Rh6BG269000 Rh6CG268900 Rh6DG262300
rosa_wichuraiana	Rw6G023070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	211
AccII	CGCG	2 cut(s)	28, 192
AciI	CCGC	2 cut(s)	192, 257
AclWI	GGATC	1 cut(s)	622
AcsI	RAATTY	1 cut(s)	90
AfaI	GTAC	2 cut(s)	354, 424
AfiI	CCNNNNNNNGG	4 cut(s)	67, 68, 84, 102
AgsI	TTSAA	4 cut(s)	211, 348, 379, 403
AjnI	CCWGG	2 cut(s)	101, 534
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	4 cut(s)	326, 335, 383, 428
AluI	AGCT	4 cut(s)	326, 335, 383, 428
AlwI	GGATC	1 cut(s)	622
AoxI	GGCC	1 cut(s)	433
ApeKI	GCWGC	3 cut(s)	142, 335, 428
ApoI	RAATTY	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	2 cut(s)	71, 105
AsuC2I	CCSGG	2 cut(s)	63, 85
AsuHPI	GGTGA	1 cut(s)	192
AvaII	GGWCC	2 cut(s)	71, 105
BbvI	GCAGC	3 cut(s)	154, 322, 415
BciT130I	CCWGG	2 cut(s)	103, 536
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	2 cut(s)	63, 85
BfaI	CTAG	3 cut(s)	147, 618, 634
BfmI	CTRYAG	1 cut(s)	429
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	3 cut(s)	143, 336, 429
BlsI	GCNGC	3 cut(s)	144, 337, 430
Bme1390I	CCNGG	4 cut(s)	63, 85, 103, 536
Bme18I	GGWCC	2 cut(s)	71, 105
BmgT120I	GGNCC	2 cut(s)	71, 105
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	4 cut(s)	63, 85, 103, 536
BmsI	GCATC	1 cut(s)	551
BpmI	CTGGAG	2 cut(s)	306, 615
BpuMI	CCSGG	2 cut(s)	63, 85
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	626
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 68, 84, 102
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	2 cut(s)	103, 536
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	3 cut(s)	229, 253, 282
BseLI	CCNNNNNNNGG	4 cut(s)	67, 68, 84, 102
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	251, 492
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	154, 322, 415
Bsh1236I	CGCG	2 cut(s)	28, 192
BshFI	GGCC	1 cut(s)	435
BsiSI	CCGG	3 cut(s)	63, 85, 627
BslI	CCNNNNNNNGG	4 cut(s)	67, 68, 84, 102
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	279, 614
BspACI	CCGC	2 cut(s)	192, 257
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	2 cut(s)	252, 493
BspFNI	CGCG	2 cut(s)	28, 192
BspLI	GGNNCC	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	2 cut(s)	279, 614
Bst2UI	CCWGG	2 cut(s)	103, 536
Bst4CI	ACNGT	2 cut(s)	422, 560
BstC8I	GCNNGC	2 cut(s)	32, 433
BstDEI	CTNAG	2 cut(s)	260, 501
BstF5I	GGATG	3 cut(s)	229, 253, 282
BstFNI	CGCG	2 cut(s)	28, 192
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	282, 617
BstMBI	GATC	2 cut(s)	279, 614
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 332
BstNI	CCWGG	2 cut(s)	103, 536
BstSCI	CCNGG	4 cut(s)	61, 83, 101, 534
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	2 cut(s)	28, 192
BstV1I	GCAGC	3 cut(s)	154, 322, 415
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BsuRI	GGCC	1 cut(s)	435
BtsCI	GGATG	3 cut(s)	229, 253, 282
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	373
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	32, 433
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	71, 105
Csp6I	GTAC	2 cut(s)	353, 423
CviJI	RGCY	8 cut(s)	34, 145, 326, 335, 383, 428, 435, 497
CviKI_1	RGCY	8 cut(s)	34, 145, 326, 335, 383, 428, 435, 497
CviQI	GTAC	2 cut(s)	353, 423
DdeI	CTNAG	2 cut(s)	260, 501
DpnI	GATC	2 cut(s)	281, 616
DpnII	GATC	2 cut(s)	279, 614
Eco47I	GGWCC	2 cut(s)	71, 105
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	101, 534
FaiI	YATR	9 cut(s)	18, 20, 188, 242, 443, 450, 456, 464, 530
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	143, 336, 429
FokI	GGATG	3 cut(s)	236, 240, 269
Fsp4HI	GCNGC	3 cut(s)	143, 336, 429
FspBI	CTAG	3 cut(s)	147, 618, 634
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	3 cut(s)	143, 336, 429
GsuI	CTGGAG	2 cut(s)	306, 615
HaeIII	GGCC	1 cut(s)	435
HapII	CCGG	3 cut(s)	63, 85, 627
HhaI	GCGC	1 cut(s)	30
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	5 cut(s)	23, 152, 197, 262, 395
HpaI	GTTAAC	1 cut(s)	415
HpaII	CCGG	3 cut(s)	63, 85, 627
HphI	GGTGA	1 cut(s)	192
Hpy166II	GTNNAC	2 cut(s)	415, 509
Hpy188I	TCNGA	4 cut(s)	157, 279, 394, 502
Hpy188III	TCNNGA	5 cut(s)	211, 376, 546, 566, 594
Hpy8I	GTNNAC	2 cut(s)	415, 509
HpyAV	CCTTC	3 cut(s)	84, 312, 605
HpyCH4III	ACNGT	2 cut(s)	422, 560
HpyCH4V	TGCA	5 cut(s)	180, 338, 371, 431, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 332
HpyF3I	CTNAG	2 cut(s)	260, 501
HspAI	GCGC	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	279
KspAI	GTTAAC	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	279, 614
Lsp1109I	GCAGC	3 cut(s)	154, 322, 415
LweI	GCATC	1 cut(s)	551
MaeI	CTAG	3 cut(s)	147, 618, 634
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	2 cut(s)	281, 616
MboI	GATC	2 cut(s)	279, 614
MflI	RGATCY	1 cut(s)	614
MluCI	AATT	3 cut(s)	13, 90, 465
MlyI	GAGTC	3 cut(s)	32, 146, 271
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	7 cut(s)	65, 68, 214, 245, 317, 330, 507
MseI	TTAA	1 cut(s)	414
MspA1I	CMGCKG	3 cut(s)	259, 326, 428
MspI	CCGG	3 cut(s)	63, 85, 627
MspR9I	CCNGG	4 cut(s)	63, 85, 103, 536
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	2 cut(s)	103, 536
MvnI	CGCG	2 cut(s)	28, 192
MwoI	GCNNNNNNNGC	2 cut(s)	177, 332
NciI	CCSGG	2 cut(s)	63, 85
NdeII	GATC	2 cut(s)	279, 614
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	149
PaqCI	CACCTGC	1 cut(s)	211
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	197, 395
PkrI	GCNGC	3 cut(s)	144, 337, 430
PleI	GAGTC	3 cut(s)	31, 146, 270
PpsI	GAGTC	3 cut(s)	31, 146, 270
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	101, 534
PspGI	CCWGG	2 cut(s)	101, 534
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	71, 105
PspPPI	RGGWCCY	1 cut(s)	71
PstI	CTGCAG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	614
PvuII	CAGCTG	2 cut(s)	326, 428
RsaI	GTAC	2 cut(s)	354, 424
RsaNI	GTAC	2 cut(s)	353, 423
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	3 cut(s)	143, 336, 429
Sau3AI	GATC	2 cut(s)	279, 614
Sau96I	GGNCC	2 cut(s)	71, 105
SchI	GAGTC	3 cut(s)	32, 146, 271
ScrFI	CCNGG	4 cut(s)	63, 85, 103, 536
SetI	ASST	8 cut(s)	57, 107, 205, 322, 328, 337, 385, 430
SfaNI	GCATC	1 cut(s)	551
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	2 cut(s)	71, 105
Sse9I	AATT	3 cut(s)	13, 90, 465
SsiI	CCGC	2 cut(s)	192, 257
SspMI	CTAG	3 cut(s)	147, 618, 634
StyD4I	CCNGG	4 cut(s)	61, 83, 101, 534
TaaI	ACNGT	2 cut(s)	422, 560
TaqI	TCGA	3 cut(s)	125, 547, 565
TasI	AATT	3 cut(s)	13, 90, 465
TfiI	GAWTC	2 cut(s)	197, 395
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	3 cut(s)	142, 335, 428
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	1 cut(s)	437
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	71, 105
XapI	RAATTY	1 cut(s)	90
XspI	CTAG	3 cut(s)	147, 618, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.