Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012925

Physical Location & Seq

Genomic Coordinates Forward (+)

18669937 .. 18672903

Gene Structure 2967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G193200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGGCTCGCAGGCTTTCCATTCTCTGTTCCCATATACGCCCCGGTCCGACTCCGGCTCCGGCCCGACTAGTTCCCGTTCCCGGCTCCAGTTGCGACTCTGGTTTCAGTGACAAGCAGCAACCCGGTGATTCCAACAAGGGGAATCTCGAAGACAACTGCGTTTTCTGCAAAATCATCCGCGGTGAAGCACCGGCTTTCAAGCTTTATGAGGATGATATTTGCTTGTGTATATTGGATATAAATCCCCTGAGTCGTGGGCATTCTCTTATTATCCCAAAATCTCATTTTTGTTCGTTGAAAGCCACACCCCCAGATGTGGTAGCTGCAATGTGTTCAAAAGTGCCCTTTATCAGCAGTGCAATCATGAAAGCCACTGATTCTGATTCATTCAACTTGTTAGTTAACAATGGTATAGCTGCAGGCCAAGTTATATTTCATACTCACATACACATAATTCCGCGCAAGGCACTTGATTGCTTATGGGCTTCTGAGAGTTTGCAGAGGCGGCCGCTGAACTTAGACCAGGAAGCCCCTCGACTTGTAGATCGAGTTCGAGAGCAATTATCATTACCCGACGACTCTGAAGATAGCAAGGGTCAAGGATCTAGTCTTACCAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009150 GO:0009259 GO:0009987 GO:0016787 GO:0016817 GO:0016819 GO:0019637 GO:0019693 GO:0034641 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0047627 GO:0055086 GO:0071704 GO:0072521 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

209

Amino Acids

22.68

Weight (kDa)

6.58

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48545 AT5G48545 AT5G48545
fragaria_vesca	FvH4_2g18050
malus_domestica	MD05G1165000.v1.1 MD10G1154300.v1.1
prunus_persica	Prupe.8G193200_v2.0.a1
pyrus_communis	pycom05g15360 pycom10g13340
rosa_chinensis	RchiOBHm_Chr6g0283441
rosa_laevigata	RLG00000012826
rosa_multiflora	Rmu_sc0004959.1_g000018
rosa_rugosa	Rorug06G0154200
rosa_samantha	Rh6AG266500 Rh6BG269000 Rh6CG268900 Rh6DG262300
rosa_wichuraiana	Rw6G023070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	183, 463
AciI	CCGC	5 cut(s)	181, 183, 461, 508, 512
AclWI	GGATC	1 cut(s)	613
AcoI	YGGCCR	1 cut(s)	509
AcuI	CTGAAG	1 cut(s)	606
AfiI	CCNNNNNNNGG	3 cut(s)	83, 141, 319
AgsI	TTSAA	4 cut(s)	202, 301, 339, 394
AhlI	ACTAGT	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	525
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	3 cut(s)	205, 326, 419
AluI	AGCT	3 cut(s)	205, 326, 419
AlwI	GGATC	1 cut(s)	613
AoxI	GGCC	3 cut(s)	63, 424, 509
ApeKI	GCWGC	3 cut(s)	118, 326, 419
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	2 cut(s)	47, 64
AsuC2I	CCSGG	3 cut(s)	45, 84, 126
AsuHPI	GGTGA	2 cut(s)	140, 197
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	130, 313, 406
BciT130I	CCWGG	1 cut(s)	527
BcnI	CCSGG	3 cut(s)	45, 84, 126
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	3 cut(s)	71, 609, 625
BfmI	CTRYAG	1 cut(s)	420
BisI	GCNGC	5 cut(s)	119, 327, 420, 509, 512
BlsI	GCNGC	5 cut(s)	120, 328, 421, 510, 513
Bme1390I	CCNGG	4 cut(s)	45, 84, 126, 527
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	47, 64
BmiI	GGNNCC	2 cut(s)	60, 88
BmrFI	CCNGG	4 cut(s)	45, 84, 126, 527
BpiI	GAAGAC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	73
BpuMI	CCSGG	3 cut(s)	45, 84, 126
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	43, 181
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 141, 319
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	2 cut(s)	43, 181
BseGI	GGATG	2 cut(s)	177, 220
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	3 cut(s)	83, 141, 319
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	242, 483
BseNI	ACTGG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	348
BseX3I	CGGCCG	1 cut(s)	509
BseXI	GCAGC	3 cut(s)	130, 313, 406
Bsh1236I	CGCG	2 cut(s)	183, 463
Bsh1285I	CGRYCG	1 cut(s)	512
BshFI	GGCC	3 cut(s)	65, 426, 511
BsiEI	CGRYCG	1 cut(s)	512
BsiSI	CCGG	6 cut(s)	45, 56, 62, 84, 126, 194
BslI	CCNNNNNNNGG	3 cut(s)	83, 141, 319
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	3 cut(s)	65, 426, 511
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	547, 605
BspACI	CCGC	5 cut(s)	181, 183, 461, 508, 512
BspANI	GGCC	3 cut(s)	65, 426, 511
BspCNI	CTCAG	2 cut(s)	243, 484
BspFNI	CGCG	2 cut(s)	183, 463
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	60, 88
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	43, 181
BssMI	GATC	2 cut(s)	547, 605
Bst2UI	CCWGG	1 cut(s)	527
BstC8I	GCNNGC	3 cut(s)	10, 14, 424
BstDEI	CTNAG	3 cut(s)	251, 492, 520
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	177, 220
BstFNI	CGCG	2 cut(s)	183, 463
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	2 cut(s)	550, 608
BstMBI	GATC	2 cut(s)	547, 605
BstMCI	CGRYCG	1 cut(s)	512
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 168, 508
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	4 cut(s)	43, 82, 124, 525
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	348
BstUI	CGCG	2 cut(s)	183, 463
BstV1I	GCAGC	3 cut(s)	130, 313, 406
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	605
BstYI	RGATCY	1 cut(s)	605
BstZI	CGGCCG	1 cut(s)	509
BsuRI	GGCC	3 cut(s)	65, 426, 511
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	177, 220
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	3 cut(s)	115, 364, 375
Cac8I	GCNNGC	3 cut(s)	10, 14, 424
CciI	TCATGA	1 cut(s)	366
CciNI	GCGGCCGC	1 cut(s)	509
CfoI	GCGC	1 cut(s)	465
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	47, 64
Cfr42I	CCGCGG	1 cut(s)	184
CpoI	CGGWCCG	1 cut(s)	47
CspI	CGGWCCG	1 cut(s)	47
CviAII	CATG	1 cut(s)	367
DdeI	CTNAG	3 cut(s)	251, 492, 520
DpnI	GATC	2 cut(s)	549, 607
DpnII	GATC	2 cut(s)	547, 605
EaeI	YGGCCR	1 cut(s)	509
EagI	CGGCCG	1 cut(s)	509
EclXI	CGGCCG	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	47
Eco52I	CGGCCG	1 cut(s)	509
Eco57I	CTGAAG	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	525
FaeI	CATG	1 cut(s)	370
FatI	CATG	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	119, 327, 420, 509, 512
FokI	GGATG	2 cut(s)	164, 227
Fsp4HI	GCNGC	5 cut(s)	119, 327, 420, 509, 512
FspBI	CTAG	3 cut(s)	71, 609, 625
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	5 cut(s)	119, 327, 420, 509, 512
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	3 cut(s)	65, 426, 511
HapII	CCGG	6 cut(s)	45, 56, 62, 84, 126, 194
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	1 cut(s)	370
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	8 cut(s)	52, 98, 131, 145, 253, 380, 386, 581
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	6 cut(s)	45, 56, 62, 84, 126, 194
HphI	GGTGA	2 cut(s)	140, 197
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	4 cut(s)	51, 385, 493, 586
Hpy188III	TCNNGA	3 cut(s)	149, 367, 557
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	1 cut(s)	581
HpyCH4V	TGCA	5 cut(s)	171, 329, 362, 422, 502
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 168, 508
HpyF3I	CTNAG	3 cut(s)	251, 492, 520
Hsp92II	CATG	1 cut(s)	370
HspAI	GCGC	1 cut(s)	463
KspAI	GTTAAC	1 cut(s)	406
KspI	CCGCGG	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	547, 605
LmnI	GCTCC	2 cut(s)	64, 92
Lsp1109I	GCAGC	3 cut(s)	130, 313, 406
MaeI	CTAG	3 cut(s)	71, 609, 625
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	2 cut(s)	549, 607
MboI	GATC	2 cut(s)	547, 605
MboII	GAAGA	2 cut(s)	164, 599
MflI	RGATCY	1 cut(s)	605
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	2 cut(s)	456, 563
MlyI	GAGTC	4 cut(s)	46, 92, 262, 575
MmeI	TCCRAC	2 cut(s)	74, 159
MnlI	CCTC	3 cut(s)	205, 498, 546
MseI	TTAA	1 cut(s)	405
MspA1I	CMGCKG	2 cut(s)	183, 514
MspI	CCGG	6 cut(s)	45, 56, 62, 84, 126, 194
MspR9I	CCNGG	4 cut(s)	45, 84, 126, 527
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	527
MvnI	CGCG	2 cut(s)	183, 463
MwoI	GCNNNNNNNGC	3 cut(s)	93, 168, 508
NciI	CCSGG	3 cut(s)	45, 84, 126
NdeII	GATC	2 cut(s)	547, 605
NlaIII	CATG	1 cut(s)	370
NlaIV	GGNNCC	2 cut(s)	60, 88
NmuCI	GTSAC	1 cut(s)	110
NotI	GCGGCCGC	1 cut(s)	509
PagI	TCATGA	1 cut(s)	366
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	4 cut(s)	131, 145, 380, 386
PkrI	GCNGC	5 cut(s)	120, 328, 421, 510, 513
PleI	GAGTC	4 cut(s)	46, 92, 261, 575
PpsI	GAGTC	4 cut(s)	46, 92, 261, 575
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	60, 88
PspPI	GGNCC	2 cut(s)	47, 64
PsrI	GAACNNNNNNTAC	2 cut(s)	537, 569
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	605
Rsr2I	CGGWCCG	1 cut(s)	47
RsrII	CGGWCCG	1 cut(s)	47
SacII	CCGCGG	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	5 cut(s)	119, 327, 420, 509, 512
Sau3AI	GATC	2 cut(s)	547, 605
Sau96I	GGNCC	2 cut(s)	47, 64
SchI	GAGTC	4 cut(s)	46, 92, 262, 575
ScrFI	CCNGG	4 cut(s)	45, 84, 126, 527
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	3 cut(s)	207, 328, 421
SfcI	CTRYAG	1 cut(s)	420
Sfr303I	CCGCGG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	47
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	2 cut(s)	456, 563
SsiI	CCGC	5 cut(s)	181, 183, 461, 508, 512
SspMI	CTAG	3 cut(s)	71, 609, 625
StyD4I	CCNGG	4 cut(s)	43, 82, 124, 525
TaqI	TCGA	4 cut(s)	150, 538, 550, 556
TasI	AATT	2 cut(s)	456, 563
TauI	GCSGC	2 cut(s)	511, 514
TfiI	GAWTC	4 cut(s)	131, 145, 380, 386
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	3 cut(s)	115, 364, 382
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	3 cut(s)	118, 326, 419
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	378, 383, 428
TspRI	CASTG	3 cut(s)	115, 364, 382
VpaK11BI	GGWCC	1 cut(s)	47
XspI	CTAG	3 cut(s)	71, 609, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.