Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012476

Physical Location & Seq

Genomic Coordinates Reverse (-)

19803502 .. 19805356

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAACCAGAAGTAATCAGAGACAAAGACTCTATGAGAAAATGGTCTCGAGCCATGAGATCACAAGGCAAGACCATTGGTTTAGTACCAACAATGGGTTACCTCCACGAAGGTCACTTATCTCTCGTTCGTCAATCACTAGCCCTCACTGACGTCACCGTCGTCTCAATCTACGTCAATCCAGGCCAATTCTCTCCCACTGAAGACCTCTCCACATACCCATCTGATTTCTCCGGCGATCTCACTAAGCTCGCGGCTCTTTCCGGTGGTAAAGTCGTCGTCTTTAACCCAAAAAACCTCTATGATTACGGCGGTGAGACGAAGAAGATAAACGACGGTGGTGGTAATGGTGGGAGGGTAGTGAGTTGTGTGGAGGAAGGTGGGTTAGGGCATGAGACTTGGATTAGGGTTGAGAGATTGGAGAAAGGTTTTTGTGGGAAGAGTAGGCCTGTGTTCTTTAGAGGTGTTGCTACTATTGTTACTAAGCTTTTTAATATTGTTGAGCCTGATGTTGCTCTGTTTGGTAAGAAAGATTATCAACAATGGAGGATTATACAGAGAATGGTTCGAGATCTTAATTTTGGTATTGAGATTGTAGGATCAGATATAGCTAGAGAAAAAGATGGACTTGCGATGAGTTCGAGAAATGTGCGTCTTTCAGATGAAGAAAGGCAAAGGGCTTTGTCTATAAGTAGGTCACTGGCCATGGCTAAAGCTTCTGTTGCAGAAGGGAAAACCAATTGTGCAGAGCTTAAGGATATGATCATTCAACAAGTTGTTGGATCTGCAGGACGAGTAGATTATGTCGAGATAGTTGACCAAGAAACTCTTGAAGGAGTAGAAGAGATAAAGAGTGGGGTAGTGATTTGTGTTGCTGCTTGGTTTGGAACGGTCAGGCTCATAGACAACATTGAGATCAATGTCTCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004592 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006573 GO:0006575 GO:0006732 GO:0006766 GO:0006767 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009081 GO:0009108 GO:0009110 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015939 GO:0015940 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033317 GO:0034641 GO:0042364 GO:0042398 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0061458 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00410 ko00770 ko01100 ko01110 map00410 map00770 map01100 map01110

Pfam Domains

Protein Families

Pantoate_ligase

Protein Analysis

310

Amino Acids

34.14

Weight (kDa)

6.05

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pantoate_ligase	PF02569	5 - 304	1.4e-96	Pantoate-beta-alanine ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48840
fragaria_vesca	FvH4_2g19300
malus_domestica	MD10G1166100.v1.1
prunus_persica	Prupe.8G204600_v2.0.a1 Prupe.8G204600_v2.0.a1
pyrus_communis	pycom10g14330
rosa_chinensis	RchiOBHm_Chr6g0285101
rosa_laevigata	RLG00000012672
rosa_multiflora	Rmu_sc0002535.1_g000036 Rmu_sc0003797.1_g000011
rosa_roxburghii	Rroxscaffold_7G00183530 Rroxscaffold_7G00183670 Rroxscaffold_7G00184030
rosa_rugosa	Rorug06G0171100
rosa_samantha	Rh6AG282300 Rh6BG283000 Rh6CG284900 Rh6DG278000
rosa_wichuraiana	Rw6G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AatII	GACGTC	1 cut(s)	156
AccII	CGCG	1 cut(s)	254
AciI	CCGC	2 cut(s)	254, 312
AclWI	GGATC	2 cut(s)	607, 790
AcoI	YGGCCR	1 cut(s)	702
AcuI	CTGAAG	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflII	CTTAAG	1 cut(s)	752
AgsI	TTSAA	2 cut(s)	770, 833
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	5 cut(s)	250, 487, 611, 716, 751
AluI	AGCT	5 cut(s)	250, 487, 611, 716, 751
Alw26I	GTCTC	6 cut(s)	15, 51, 169, 311, 389, 928
AlwI	GGATC	2 cut(s)	607, 790
Ama87I	CYCGRG	1 cut(s)	48
AoxI	GGCC	3 cut(s)	184, 446, 702
ApeKI	GCWGC	1 cut(s)	875
AsuHPI	GGTGA	2 cut(s)	148, 326
AvaI	CYCGRG	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	704
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	862
BccI	CCATC	2 cut(s)	229, 617
BceAI	ACGGC	1 cut(s)	325
BcgI	CGANNNNNNTGC	2 cut(s)	631, 665
BciT130I	CCWGG	1 cut(s)	183
BclI	TGATCA	1 cut(s)	762
BcoDI	GTCTC	6 cut(s)	15, 51, 169, 311, 389, 928
BfaI	CTAG	3 cut(s)	140, 612, 931
BfmI	CTRYAG	1 cut(s)	786
BfrI	CTTAAG	1 cut(s)	752
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	2 cut(s)	255, 876
BlsI	GCNGC	2 cut(s)	256, 877
Bme1390I	CCNGG	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	705
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	705
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	705
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	705
BseXI	GCAGC	1 cut(s)	862
BsgI	GTGCAG	1 cut(s)	765
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	3 cut(s)	186, 448, 704
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	234, 264
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	6 cut(s)	15, 51, 169, 311, 389, 928
BsmBI	CGTCTC	2 cut(s)	169, 311
BsnI	GGCC	3 cut(s)	186, 448, 704
Bso31I	GGTCTC	1 cut(s)	51
BsoBI	CYCGRG	1 cut(s)	48
Bsp143I	GATC	7 cut(s)	59, 238, 571, 599, 762, 782, 915
Bsp19I	CCATGG	1 cut(s)	705
BspACI	CCGC	2 cut(s)	254, 312
BspANI	GGCC	3 cut(s)	186, 448, 704
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	2 cut(s)	607, 790
BspTI	CTTAAG	1 cut(s)	752
BspTNI	GGTCTC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	705
BssECI	CCNNGG	1 cut(s)	705
BssMI	GATC	7 cut(s)	59, 238, 571, 599, 762, 782, 915
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	705
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	3 cut(s)	160, 338, 892
Bst6I	CTCTTC	2 cut(s)	434, 837
BstACI	GRCGYC	1 cut(s)	153
BstAFI	CTTAAG	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	246, 483
BstDSI	CCRYGG	1 cut(s)	705
BstEII	GGTNACC	1 cut(s)	98
BstFNI	CGCG	1 cut(s)	254
BstKTI	GATC	7 cut(s)	62, 241, 574, 602, 765, 785, 918
BstMAI	GTCTC	6 cut(s)	15, 51, 169, 311, 389, 928
BstMBI	GATC	7 cut(s)	59, 238, 571, 599, 762, 782, 915
BstMWI	GCNNNNNNNGC	1 cut(s)	722
BstNI	CCWGG	1 cut(s)	183
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	786
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	862
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	571, 782
BstYI	RGATCY	2 cut(s)	571, 782
BsuRI	GGCC	3 cut(s)	186, 448, 704
BtgI	CCRYGG	1 cut(s)	705
BtgZI	GCGATG	1 cut(s)	647
BtsIMutI	CAGTG	3 cut(s)	147, 198, 698
Cac8I	GCNNGC	1 cut(s)	252
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	3 cut(s)	55, 392, 706
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	2 cut(s)	246, 483
DpnI	GATC	7 cut(s)	61, 240, 573, 601, 764, 784, 917
DpnII	GATC	7 cut(s)	59, 238, 571, 599, 762, 782, 915
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	702
Eam1104I	CTCTTC	2 cut(s)	434, 837
EarI	CTCTTC	2 cut(s)	434, 837
Eco130I	CCWWGG	1 cut(s)	705
Eco147I	AGGCCT	1 cut(s)	448
Eco31I	GGTCTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	48
Eco91I	GGTNACC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	705
Esp3I	CGTCTC	2 cut(s)	169, 311
FaeI	CATG	3 cut(s)	58, 395, 709
FalI	AAGNNNNNCTT	4 cut(s)	612, 644, 813, 845
FatI	CATG	3 cut(s)	54, 391, 705
FbaI	TGATCA	1 cut(s)	762
Fnu4HI	GCNGC	2 cut(s)	255, 876
Fsp4HI	GCNGC	2 cut(s)	255, 876
FspBI	CTAG	3 cut(s)	140, 612, 931
GluI	GCNGC	2 cut(s)	255, 876
HaeIII	GGCC	3 cut(s)	186, 448, 704
HapII	CCGG	2 cut(s)	234, 264
HgaI	GACGC	1 cut(s)	641
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	58, 395, 709
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	2 cut(s)	485, 714
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	2 cut(s)	234, 264
HphI	GGTGA	2 cut(s)	148, 326
Hpy166II	GTNNAC	1 cut(s)	817
Hpy188I	TCNGA	4 cut(s)	20, 226, 604, 661
Hpy188III	TCNNGA	5 cut(s)	48, 569, 642, 808, 830
Hpy8I	GTNNAC	1 cut(s)	817
Hpy99I	CGWCG	3 cut(s)	164, 281, 338
HpyAV	CCTTC	4 cut(s)	104, 371, 722, 827
HpyCH4III	ACNGT	3 cut(s)	160, 338, 892
HpyCH4IV	ACGT	2 cut(s)	153, 174
HpyCH4V	TGCA	3 cut(s)	725, 746, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	722
HpyF3I	CTNAG	2 cut(s)	246, 483
HpySE526I	ACGT	2 cut(s)	153, 174
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	58, 395, 709
Ksp22I	TGATCA	1 cut(s)	762
Kzo9I	GATC	7 cut(s)	59, 238, 571, 599, 762, 782, 915
Lsp1109I	GCAGC	1 cut(s)	862
MaeI	CTAG	3 cut(s)	140, 612, 931
MaeII	ACGT	2 cut(s)	153, 174
MaeIII	GTNAC	5 cut(s)	98, 113, 154, 478, 696
MalI	GATC	7 cut(s)	61, 240, 573, 601, 764, 784, 917
MboI	GATC	7 cut(s)	59, 238, 571, 599, 762, 782, 915
MboII	GAAGA	6 cut(s)	215, 334, 337, 451, 677, 854
MfeI	CAATTG	1 cut(s)	739
MflI	RGATCY	2 cut(s)	571, 782
MlsI	TGGCCA	1 cut(s)	704
MluCI	AATT	3 cut(s)	188, 577, 739
MluNI	TGGCCA	1 cut(s)	704
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	760
MnlI	CCTC	8 cut(s)	113, 155, 218, 308, 348, 367, 455, 540
Mox20I	TGGCCA	1 cut(s)	704
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	4 cut(s)	285, 492, 576, 753
Msp20I	TGGCCA	1 cut(s)	704
MspCI	CTTAAG	1 cut(s)	752
MspI	CCGG	2 cut(s)	234, 264
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	739
MvaI	CCWGG	1 cut(s)	183
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	722
NcoI	CCATGG	1 cut(s)	705
NdeII	GATC	7 cut(s)	59, 238, 571, 599, 762, 782, 915
NlaIII	CATG	3 cut(s)	58, 395, 709
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	113, 154, 696
PaeR7I	CTCGAG	1 cut(s)	48
PceI	AGGCCT	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	256, 877
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	181
PspEI	GGTNACC	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	790
PsuI	RGATCY	2 cut(s)	571, 782
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SaqAI	TTAA	4 cut(s)	285, 492, 576, 753
SatI	GCNGC	2 cut(s)	255, 876
Sau3AI	GATC	7 cut(s)	59, 238, 571, 599, 762, 782, 915
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	786
Sfr274I	CTCGAG	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	48, 752
SmoI	CTYRAG	2 cut(s)	48, 752
Sse9I	AATT	3 cut(s)	188, 577, 739
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	2 cut(s)	254, 312
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	3 cut(s)	140, 612, 931
StuI	AGGCCT	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	705
TaaI	ACNGT	3 cut(s)	160, 338, 892
TaiI	ACGT	2 cut(s)	156, 177
TaqI	TCGA	4 cut(s)	49, 568, 641, 807
TasI	AATT	3 cut(s)	188, 577, 739
TauI	GCSGC	1 cut(s)	257
Tru1I	TTAA	4 cut(s)	285, 492, 576, 753
Tru9I	TTAA	4 cut(s)	285, 492, 576, 753
TscAI	CASTG	3 cut(s)	154, 205, 705
TseFI	GTSAC	3 cut(s)	113, 154, 696
TseI	GCWGC	1 cut(s)	875
Tsp45I	GTSAC	3 cut(s)	113, 154, 696
TspDTI	ATGAA	1 cut(s)	678
TspRI	CASTG	3 cut(s)	154, 205, 705
Vha464I	CTTAAG	1 cut(s)	752
XhoI	CTCGAG	1 cut(s)	48
XspI	CTAG	3 cut(s)	140, 612, 931
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.